Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0007093

Physical Location & Seq

Genomic Coordinates Reverse (-)

18767797 .. 18769457

Gene Structure 1661 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g24550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGAAGCACCTGCAATGCTTATGCCAAGTATAGCCGACTCGAGATCAGTTAGAGACGTTATACAAGAAGTGAAAATGGTTCAGATATGGGAAAACATGATGAGGTCCTGCGAACTGAGGGGCAAGGAGTTGTTGGATGATAATGTAATAGCCACAACTGACCTCGATGAATGGTTGAAAGCAAAGAACAGCAACGAAGCATCCATTATCGGTGTTGGTCTGCCTTGTTATTCATGCTTGCAGACTCTTCTCTGCTCCATCAGATCGAATTCAGATGGTTTACTGCTGCTTGATGACGTTGAAATTAACTACTTAAATAGACCGCATGAAAAATTGTGGGACTGGTTCTTTAATCCGATAATGGTCTTGAAGGAACAGATTAAGGTCATAAAATTGTCAGAGGGTGAGGTTAGATATTTGGAGAAAGTGGTTCTTTTCGGAACCAATAATCCACAACACGTAGTGGCTTGGGATAACGGAAGTTTACTACCTCAAGACGCTCTAAGAGCTGCTCAAATTGAAGGCATTAGTAGAAGGATGATTGGAATGATGAGAAGTGTCTCAAAATTTCCCACTTACAGAAGGAAATTCCGGCACGTTGTCAAGGCTTTAGTCGCATATTCCTTGCCGAAGGAGGCTTCAATTGCATCCGGTTCTGTTAAATCTACCATCTCCAGTGAAGATGTTGTGCTGGATGAACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

235

Amino Acids

26.47

Weight (kDa)

5.73

Isoelectric Point (pI)

44.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37030
fragaria_vesca	FvH4_1g15860 FvH4_1g16000
malus_domestica	MD00G1044300.v1.1 MD02G1170500.v1.1 MD15G1282200.v1.1
prunus_persica	Prupe.7G134900_v2.0.a1 Prupe.7G134900_v2.0.a1
pyrus_communis	pycom02g13700 pycom15g24550
rosa_chinensis	RchiOBHm_Chr2g0105181
rosa_laevigata	RLG00000017408
rosa_multiflora	Rmu_co8419219.1_g000001 Rmu_sc0001170.1_g000007 Rmu_sc0006734.1_g000009
rosa_roxburghii	Rroxscaffold_2G00138390
rosa_rugosa	Rorug02G0126700 Rorug02G0126700 Rorug02G0126700 Rorug02G0126800
rosa_samantha	Rh2AG177500 Rh2BG185500 Rh2CG182000 Rh2DG183600
rosa_wichuraiana	Rw2G013930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	19
Acc36I	ACCTGC	1 cut(s)	19
AciI	CCGC	1 cut(s)	323
AcsI	RAATTY	3 cut(s)	268, 566, 587
AdeI	CACNNNGTG	1 cut(s)	463
AflIII	ACRYGT	1 cut(s)	457
AgsI	TTSAA	5 cut(s)	178, 302, 370, 521, 642
AloI	GAACNNNNNNTCC	2 cut(s)	433, 465
AluBI	AGCT	1 cut(s)	509
AluI	AGCT	1 cut(s)	509
Alw26I	GTCTC	2 cut(s)	48, 565
Ama87I	CYCGRG	1 cut(s)	40
ApeKI	GCWGC	2 cut(s)	286, 509
ApoI	RAATTY	3 cut(s)	268, 566, 587
AspS9I	GGNCC	1 cut(s)	105
AsuHPI	GGTGA	1 cut(s)	416
AvaI	CYCGRG	1 cut(s)	40
AvaII	GGWCC	1 cut(s)	105
BbvI	GCAGC	2 cut(s)	273, 496
BccI	CCATC	3 cut(s)	266, 269, 677
BcoDI	GTCTC	2 cut(s)	48, 565
BfuAI	ACCTGC	1 cut(s)	19
BisI	GCNGC	2 cut(s)	287, 510
BlsI	GCNGC	2 cut(s)	288, 511
Bme18I	GGWCC	1 cut(s)	105
BmeT110I	CYCGRG	1 cut(s)	40
BmgT120I	GGNCC	1 cut(s)	105
BmiI	GGNNCC	1 cut(s)	442
BmsI	GCATC	2 cut(s)	209, 656
BpmI	CTGGAG	1 cut(s)	658
BpuEI	CTTGAG	1 cut(s)	477
BsaAI	YACGTR	1 cut(s)	460
BsaWI	WCCGGW	1 cut(s)	650
Bse1I	ACTGG	2 cut(s)	347, 675
Bse3DI	GCAATG	1 cut(s)	21
BseGI	GGATG	5 cut(s)	142, 200, 543, 647, 700
BseMI	GCAATG	1 cut(s)	21
BseMII	CTCAG	1 cut(s)	107
BseNI	ACTGG	2 cut(s)	347, 675
BseXI	GCAGC	2 cut(s)	273, 496
BsiHKCI	CYCGRG	1 cut(s)	40
BsiSI	CCGG	2 cut(s)	592, 651
BslFI	GGGAC	1 cut(s)	353
BsmAI	GTCTC	2 cut(s)	48, 565
BsmBI	CGTCTC	1 cut(s)	48
BsmFI	GGGAC	1 cut(s)	353
BsoBI	CYCGRG	1 cut(s)	40
Bsp143I	GATC	2 cut(s)	44, 263
BspACI	CCGC	1 cut(s)	323
BspCNI	CTCAG	1 cut(s)	108
BspLI	GGNNCC	1 cut(s)	442
BspMI	ACCTGC	1 cut(s)	19
BsrDI	GCAATG	1 cut(s)	21
BsrI	ACTGG	2 cut(s)	347, 675
BssMI	GATC	2 cut(s)	44, 263
Bst6I	CTCTTC	1 cut(s)	252
BstBAI	YACGTR	1 cut(s)	460
BstC8I	GCNNGC	1 cut(s)	239
BstDEI	CTNAG	2 cut(s)	116, 503
BstF5I	GGATG	5 cut(s)	142, 200, 543, 647, 700
BstKTI	GATC	2 cut(s)	47, 266
BstMAI	GTCTC	2 cut(s)	48, 565
BstMBI	GATC	2 cut(s)	44, 263
BstMWI	GCNNNNNNNGC	3 cut(s)	506, 614, 644
BstV1I	GCAGC	2 cut(s)	273, 496
BtsCI	GGATG	5 cut(s)	142, 200, 543, 647, 700
BtsIMutI	CAGTG	1 cut(s)	682
BveI	ACCTGC	1 cut(s)	19
Cac8I	GCNNGC	1 cut(s)	239
Cfr13I	GGNCC	1 cut(s)	105
CseI	GACGC	1 cut(s)	506
CviAII	CATG	3 cut(s)	97, 234, 326
CviJI	RGCY	6 cut(s)	35, 152, 467, 509, 608, 638
CviKI_1	RGCY	6 cut(s)	35, 152, 467, 509, 608, 638
DdeI	CTNAG	2 cut(s)	116, 503
DpnI	GATC	2 cut(s)	46, 265
DpnII	GATC	2 cut(s)	44, 263
DraIII	CACNNNGTG	1 cut(s)	463
Eam1104I	CTCTTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	252
Eco47I	GGWCC	1 cut(s)	105
Eco88I	CYCGRG	1 cut(s)	40
EcoO109I	RGGNCCY	1 cut(s)	105
EcoRI	GAATTC	1 cut(s)	268
Esp3I	CGTCTC	1 cut(s)	48
FaeI	CATG	3 cut(s)	100, 237, 329
FaiI	YATR	9 cut(s)	23, 32, 62, 88, 98, 235, 327, 389, 619
FalI	AAGNNNNNCTT	2 cut(s)	417, 449
FaqI	GGGAC	1 cut(s)	353
FatI	CATG	3 cut(s)	96, 233, 325
Fnu4HI	GCNGC	2 cut(s)	287, 510
FokI	GGATG	4 cut(s)	149, 187, 550, 634
Fsp4HI	GCNGC	2 cut(s)	287, 510
GluI	GCNGC	2 cut(s)	287, 510
GsuI	CTGGAG	1 cut(s)	658
HapII	CCGG	2 cut(s)	592, 651
HgaI	GACGC	1 cut(s)	506
Hin1II	CATG	3 cut(s)	100, 237, 329
HinfI	GANTC	2 cut(s)	38, 244
HpaII	CCGG	2 cut(s)	592, 651
HphI	GGTGA	1 cut(s)	416
Hpy166II	GTNNAC	2 cut(s)	281, 485
Hpy188I	TCNGA	6 cut(s)	84, 263, 274, 357, 400, 440
Hpy188III	TCNNGA	3 cut(s)	42, 367, 494
Hpy8I	GTNNAC	2 cut(s)	281, 485
HpyAV	CCTTC	5 cut(s)	364, 515, 528, 576, 625
HpyCH4IV	ACGT	4 cut(s)	57, 297, 459, 597
HpyCH4V	TGCA	3 cut(s)	14, 241, 647
HpyF10VI	GCNNNNNNNGC	3 cut(s)	506, 614, 644
HpyF3I	CTNAG	2 cut(s)	116, 503
HpySE526I	ACGT	4 cut(s)	57, 297, 459, 597
Hsp92II	CATG	3 cut(s)	100, 237, 329
Kzo9I	GATC	2 cut(s)	44, 263
LmnI	GCTCC	1 cut(s)	260
LpnPI	CCDG	7 cut(s)	24, 121, 328, 605, 664, 677, 688
Lsp1109I	GCAGC	2 cut(s)	273, 496
LweI	GCATC	2 cut(s)	209, 656
MaeII	ACGT	4 cut(s)	57, 297, 459, 597
MalI	GATC	2 cut(s)	46, 265
MboI	GATC	2 cut(s)	44, 263
MboII	GAAGA	2 cut(s)	239, 692
MfeI	CAATTG	1 cut(s)	642
MluCI	AATT	8 cut(s)	268, 303, 332, 392, 516, 566, 587, 642
MlyI	GAGTC	2 cut(s)	32, 238
MmeI	TCCRAC	1 cut(s)	114
MnlI	CCTC	7 cut(s)	96, 111, 173, 394, 400, 501, 628
MseI	TTAA	6 cut(s)	306, 314, 351, 381, 660, 703
MspI	CCGG	2 cut(s)	592, 651
MunI	CAATTG	1 cut(s)	642
MwoI	GCNNNNNNNGC	3 cut(s)	506, 614, 644
NdeII	GATC	2 cut(s)	44, 263
NlaIII	CATG	3 cut(s)	100, 237, 329
NlaIV	GGNNCC	1 cut(s)	442
PaeR7I	CTCGAG	1 cut(s)	40
PaqCI	CACCTGC	1 cut(s)	19
PkrI	GCNGC	2 cut(s)	288, 511
PleI	GAGTC	2 cut(s)	32, 238
PpsI	GAGTC	2 cut(s)	32, 238
Ppu21I	YACGTR	1 cut(s)	460
PpuMI	RGGWCCY	1 cut(s)	105
Psp5II	RGGWCCY	1 cut(s)	105
PspN4I	GGNNCC	1 cut(s)	442
PspPI	GGNCC	1 cut(s)	105
PspPPI	RGGWCCY	1 cut(s)	105
SaqAI	TTAA	6 cut(s)	306, 314, 351, 381, 660, 703
SatI	GCNGC	2 cut(s)	287, 510
Sau3AI	GATC	2 cut(s)	44, 263
Sau96I	GGNCC	1 cut(s)	105
SchI	GAGTC	2 cut(s)	32, 238
SfaNI	GCATC	2 cut(s)	209, 656
Sfr274I	CTCGAG	1 cut(s)	40
SinI	GGWCC	1 cut(s)	105
SlaI	CTCGAG	1 cut(s)	40
SmlI	CTYRAG	2 cut(s)	40, 492
SmoI	CTYRAG	2 cut(s)	40, 492
Sse9I	AATT	8 cut(s)	268, 303, 332, 392, 516, 566, 587, 642
SsiI	CCGC	1 cut(s)	323
TaiI	ACGT	4 cut(s)	60, 300, 462, 600
TaqI	TCGA	3 cut(s)	41, 165, 266
TasI	AATT	8 cut(s)	268, 303, 332, 392, 516, 566, 587, 642
Tru1I	TTAA	6 cut(s)	306, 314, 351, 381, 660, 703
Tru9I	TTAA	6 cut(s)	306, 314, 351, 381, 660, 703
TscAI	CASTG	1 cut(s)	682
TseI	GCWGC	2 cut(s)	286, 509
TspDTI	ATGAA	3 cut(s)	183, 222, 342
TspGWI	ACGGA	1 cut(s)	492
TspRI	CASTG	1 cut(s)	682
VpaK11BI	GGWCC	1 cut(s)	105
XapI	RAATTY	3 cut(s)	268, 566, 587
XhoI	CTCGAG	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.