MD15G1282200.v1.1

membrane

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
25456788 .. 25460414
3627 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1282200.v1.1.491

Sequence Viewer

Length: 1752 bp
ATGCCGATGTTCCTGAATCTATGGACCTTTTTTGGCGCGGATTCCCCACAATCTTTCAGACGCTGCGTCAAAATTTTCTCTCTGGTTTTTGCTTTCGGCTCTGCTCTCTGCCTTGGTGCTCTTAAAGGTCTTCTGGTCGGACCCATTTCTGCACTAATACTGATTTTAGGGAATGTGGGAATAATTTTAGGTTTATCTCCTGCACATGTTGTCTGGACAATCTACACTCTCATAAAGATTCACAGATTTGATGTACCACTTAAAATTGCAATTTTGTTTGCCTTGCCTGGCCTGCTGGGTATATGGCTGGGTTTGAGCATAGCTGGGAGTGTTCTGTTGGGTGTGGGATATGGATTCCTCACTCCCTGGGTTTCTACTTTTGAGGCCTTTAGGCATGACAACCGGTACAAGAAATTCAAACATTGTATTCTGGATGGAACTTGGGGGACTGTTAAAGGAAGCTGTACTGTAGTTAGAGACTTTGCAGACCTGTGTTACCACTCGTACCCACTTTACTTGAAGGAGTTGCACGAATCACCCGCTGCAGAGGAAGTTCGCACTCTTAGGTTGATTCACATTCCAGCATGTATTATGGTTGGTGTGTTGGGGCTAATCGTGGAGATTCCTGTTTACACTGCAATTGCAGTTGTAAAGAGTCCCTATATGCTGCTTAAGGGCTGGTATCGACTGATTCATGATCTGATTACTCGAGAAGGTCCATTTCTTGAACTAGCATGCATCCCTATTGCTGGTTTGACAATCCTTCTGTGGCCAATTGTGGTTGTTGCAAGTATTGTATTGGCAGTTTTCTCAAGCATTTTAATCGGATTGTATGCATCAGTTGTAGTATATCAGGAAAGATCTTTCAGGAAAGGTGTGGCGTACGTGGTTGCAATGGTGGCTGAATTTGATGAATACACGAATGACTGGCTGTATCTTCGAGAGGGAACAATCTTTCCAAAGCCCAAATATCGAAAAAGAGCTGTCGCTCAATCACCCGAGTTCTCTATTCGAGGAAATCAGCTGGCTACACTCAGTCCTGCTCCTATGGAAGCACCTGCAATGCTTATGCCAAGTATAGCCAACTCGAGATCAGTTAGAGACGTTATACAAGAAGTGAAAATTGTTCAGATATGGGAAAACATGATGAGGTCCTGCGAACTGAGGGGCAAGGAGTTGTTGGATGATAATGTAATAGCCACAACTGACCTCGATGAATGGTTGAAAGCAAAGAACAGCAACGAAGCATCCATTATCGGTGTTGGTCTGCCATGTTATTCATGCTTGCAGACTCTTCTCTGCTCCATCAGATCGAATTCAGATGGTTTACTGCTGCTTGATGACGTTGAAATTAACTACTTAAATAGACCGCATGAAAAATTGTGGGACTGGTTCTTTAATCCGATAATGGTCTTGAAGGAACAGATTAAGGTCATAAAATTGTCAGAGGGTGAGGTTAGATATTTGGAGAAAGTGGTTCTTTTTGGAACCAATAATCCACAACGCGTAGTGGCTTGGGATAACGGAAGTTTACTACCTCAAGACGCTCTAAGAGCTGCTCAAATCGAAGGCATTAGTAGAAGGATGATTGGAATGATGAGAAGTGTCTCAAAATTTCCCACTTACAGAAGGAAATTCCGGCACGTTGTCAAGGCTTTAGTCGCATATTCCTTGCCGAAGGAGGCTTCAATCGCATCCGGTTCTGTTAAATCTACCATCTCCAGTGAAGATGTTGTGCTGGATGAACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

584

Amino Acids

65.19

Weight (kDa)

8.79

Isoelectric Point (pI)

40.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1066
Acc36I ACCTGC 1 cut(s) 1066
AccII CGCG 2 cut(s) 38, 1506
AciI CCGC 3 cut(s) 38, 540, 1370
AcoI YGGCCR 1 cut(s) 770
AcsI RAATTY 6 cut(s) 72, 413, 905, 1315, 1613, 1634
AfaI GTAC 5 cut(s) 255, 407, 466, 506, 884
AfiI CCNNNNNNNGG 1 cut(s) 749
AflII CTTAAG 1 cut(s) 671
AflIII ACRYGT 2 cut(s) 205, 1504
AgeI ACCGGT 1 cut(s) 402
AgsI TTSAA 7 cut(s) 418, 520, 728, 1225, 1349, 1417, 1689
AhdI GACNNNNNGTC 1 cut(s) 65
AjnI CCWGG 2 cut(s) 286, 365
AloI GAACNNNNNNTCC 4 cut(s) 940, 972, 1480, 1512
AluBI AGCT 5 cut(s) 323, 462, 983, 1024, 1556
AluI AGCT 5 cut(s) 323, 462, 983, 1024, 1556
Alw21I GWGCWC 1 cut(s) 121
Alw26I GTCTC 3 cut(s) 471, 1095, 1612
AlwNI CAGNNNCTG 1 cut(s) 63
Ama87I CYCGRG 3 cut(s) 708, 998, 1087
AoxI GGCC 3 cut(s) 289, 384, 770
ApeKI GCWGC 5 cut(s) 63, 542, 667, 1333, 1556
ApoI RAATTY 6 cut(s) 72, 413, 905, 1315, 1613, 1634
AsiGI ACCGGT 1 cut(s) 402
AspLEI GCGC 1 cut(s) 38
AspS9I GGNCC 4 cut(s) 24, 140, 716, 1152
AsuHPI GGTGA 3 cut(s) 528, 987, 1463
AvaI CYCGRG 3 cut(s) 708, 998, 1087
AvaII GGWCC 4 cut(s) 24, 140, 716, 1152
BalI TGGCCA 1 cut(s) 772
BbsI GAAGAC 1 cut(s) 122
Bbv12I GWGCWC 1 cut(s) 121
BbvI GCAGC 5 cut(s) 50, 529, 654, 1320, 1543
BccI CCATC 4 cut(s) 428, 1313, 1316, 1724
BcgI CGANNNNNNTGC 2 cut(s) 805, 839
BciT130I CCWGG 2 cut(s) 288, 367
BcoDI GTCTC 3 cut(s) 471, 1095, 1612
BfaI CTAG 1 cut(s) 731
BfmI CTRYAG 2 cut(s) 468, 543
BfrI CTTAAG 1 cut(s) 671
BfuAI ACCTGC 1 cut(s) 1066
BglII AGATCT 1 cut(s) 860
BisI GCNGC 5 cut(s) 64, 543, 668, 1334, 1557
BlsI GCNGC 5 cut(s) 65, 544, 669, 1335, 1558
Bme1390I CCNGG 2 cut(s) 288, 367
Bme18I GGWCC 4 cut(s) 24, 140, 716, 1152
BmeRI GACNNNNNGTC 1 cut(s) 65
BmeT110I CYCGRG 3 cut(s) 708, 998, 1087
BmgT120I GGNCC 4 cut(s) 24, 140, 716, 1152
BmiI GGNNCC 2 cut(s) 142, 1489
BmrFI CCNGG 2 cut(s) 288, 367
BmsI GCATC 4 cut(s) 747, 845, 1256, 1703
BpiI GAAGAC 1 cut(s) 122
BpmI CTGGAG 1 cut(s) 1705
BpuEI CTTGAG 2 cut(s) 796, 1524
BsaAI YACGTR 1 cut(s) 886
BsaJI CCNNGG 3 cut(s) 112, 365, 366
BsaWI WCCGGW 2 cut(s) 402, 1697
Bsc4I CCNNNNNNNGG 1 cut(s) 749
Bse118I RCCGGY 1 cut(s) 402
Bse1I ACTGG 3 cut(s) 932, 1394, 1722
Bse3DI GCAATG 2 cut(s) 900, 1068
BseBI CCWGG 2 cut(s) 288, 367
BseDI CCNNGG 3 cut(s) 112, 365, 366
BseGI GGATG 7 cut(s) 439, 738, 1189, 1247, 1590, 1694, 1747
BseLI CCNNNNNNNGG 1 cut(s) 749
BseMI GCAATG 2 cut(s) 900, 1068
BseMII CTCAG 2 cut(s) 1048, 1154
BseNI ACTGG 3 cut(s) 932, 1394, 1722
BseXI GCAGC 5 cut(s) 50, 529, 654, 1320, 1543
BseYI CCCAGC 3 cut(s) 295, 307, 323
BsgI GTGCAG 2 cut(s) 135, 186
Bsh1236I CGCG 2 cut(s) 38, 1506
BshFI GGCC 3 cut(s) 291, 386, 772
BshTI ACCGGT 1 cut(s) 402
BsiHKAI GWGCWC 1 cut(s) 121
BsiHKCI CYCGRG 3 cut(s) 708, 998, 1087
BsiSI CCGG 3 cut(s) 403, 1639, 1698
BsiWI CGTACG 1 cut(s) 882
BslFI GGGAC 3 cut(s) 460, 642, 1400
BslI CCNNNNNNNGG 1 cut(s) 749
BsmAI GTCTC 3 cut(s) 471, 1095, 1612
BsmBI CGTCTC 1 cut(s) 1095
BsmFI GGGAC 3 cut(s) 460, 642, 1400
BsnI GGCC 3 cut(s) 291, 386, 772
BsoBI CYCGRG 3 cut(s) 708, 998, 1087
Bsp1286I GDGCHC 1 cut(s) 121
Bsp143I GATC 4 cut(s) 697, 860, 1091, 1310
BspACI CCGC 3 cut(s) 38, 540, 1370
BspANI GGCC 3 cut(s) 291, 386, 772
BspCNI CTCAG 2 cut(s) 1047, 1155
BspFNI CGCG 2 cut(s) 38, 1506
BspHI TCATGA 1 cut(s) 694
BspLI GGNNCC 2 cut(s) 142, 1489
BspMAI CTGCAG 1 cut(s) 547
BspMI ACCTGC 1 cut(s) 1066
BspTI CTTAAG 1 cut(s) 671
BsrDI GCAATG 2 cut(s) 900, 1068
BsrFI RCCGGY 1 cut(s) 402
BsrI ACTGG 3 cut(s) 932, 1394, 1722
BssAI RCCGGY 1 cut(s) 402
BssECI CCNNGG 3 cut(s) 112, 365, 366
BssMI GATC 4 cut(s) 697, 860, 1091, 1310
BssT1I CCWWGG 1 cut(s) 112
Bst2UI CCWGG 2 cut(s) 288, 367
Bst4CI ACNGT 2 cut(s) 451, 469
Bst6I CTCTTC 1 cut(s) 1299
BstAFI CTTAAG 1 cut(s) 671
BstBAI YACGTR 1 cut(s) 886
BstC8I GCNNGC 4 cut(s) 293, 736, 1026, 1286
BstDEI CTNAG 4 cut(s) 563, 1034, 1163, 1550
BstF5I GGATG 7 cut(s) 439, 738, 1189, 1247, 1590, 1694, 1747
BstFNI CGCG 2 cut(s) 38, 1506
BstHHI GCGC 1 cut(s) 38
BstKTI GATC 4 cut(s) 700, 863, 1094, 1313
BstMAI GTCTC 3 cut(s) 471, 1095, 1612
BstMBI GATC 4 cut(s) 697, 860, 1091, 1310
BstMWI GCNNNNNNNGC 5 cut(s) 292, 899, 1553, 1661, 1691
BstNI CCWGG 2 cut(s) 288, 367
BstNSI RCATGY 3 cut(s) 209, 588, 738
BstSCI CCNGG 2 cut(s) 286, 365
BstSFI CTRYAG 2 cut(s) 468, 543
BstUI CGCG 2 cut(s) 38, 1506
BstV1I GCAGC 5 cut(s) 50, 529, 654, 1320, 1543
BstV2I GAAGAC 1 cut(s) 122
BstX2I RGATCY 1 cut(s) 860
BstYI RGATCY 1 cut(s) 860
BsuRI GGCC 3 cut(s) 291, 386, 772
BtsCI GGATG 7 cut(s) 439, 738, 1189, 1247, 1590, 1694, 1747
BtsI GCAGTG 1 cut(s) 633
BtsIMutI CAGTG 2 cut(s) 633, 1729
BveI ACCTGC 1 cut(s) 1066
Cac8I GCNNGC 4 cut(s) 293, 736, 1026, 1286
CaiI CAGNNNCTG 1 cut(s) 63
CciI TCATGA 1 cut(s) 694
CfoI GCGC 1 cut(s) 38
Cfr10I RCCGGY 1 cut(s) 402
Cfr13I GGNCC 4 cut(s) 24, 140, 716, 1152
CseI GACGC 3 cut(s) 55, 69, 1553
Csp6I GTAC 5 cut(s) 254, 406, 465, 505, 883
CspAI ACCGGT 1 cut(s) 402
CspCI CAANNNNNGTGG 2 cut(s) 498, 533
CviAII CATG 9 cut(s) 206, 395, 585, 695, 735, 1144, 1272, 1281, 1373
CviQI GTAC 5 cut(s) 254, 406, 465, 505, 883
DdeI CTNAG 4 cut(s) 563, 1034, 1163, 1550
DpnI GATC 4 cut(s) 699, 862, 1093, 1312
DpnII GATC 4 cut(s) 697, 860, 1091, 1310
DriI GACNNNNNGTC 1 cut(s) 65
EaeI YGGCCR 1 cut(s) 770
Eam1104I CTCTTC 1 cut(s) 1299
Eam1105I GACNNNNNGTC 1 cut(s) 65
EarI CTCTTC 1 cut(s) 1299
Eco130I CCWWGG 1 cut(s) 112
Eco147I AGGCCT 1 cut(s) 386
Eco47I GGWCC 4 cut(s) 24, 140, 716, 1152
Eco88I CYCGRG 3 cut(s) 708, 998, 1087
EcoO109I RGGNCCY 1 cut(s) 1152
EcoRI GAATTC 1 cut(s) 1315
EcoRII CCWGG 2 cut(s) 286, 365
EcoT14I CCWWGG 1 cut(s) 112
EcoT22I ATGCAT 2 cut(s) 740, 838
ErhI CCWWGG 1 cut(s) 112
Esp3I CGTCTC 1 cut(s) 1095
FaeI CATG 9 cut(s) 209, 398, 588, 698, 738, 1147, 1275, 1284, 1376
FalI AAGNNNNNCTT 2 cut(s) 1464, 1496
FaqI GGGAC 3 cut(s) 460, 642, 1400
FatI CATG 9 cut(s) 205, 394, 584, 694, 734, 1143, 1271, 1280, 1372
FauI CCCGC 1 cut(s) 547
Fnu4HI GCNGC 5 cut(s) 64, 543, 668, 1334, 1557
FokI GGATG 6 cut(s) 446, 725, 1196, 1234, 1597, 1681
Fsp4HI GCNGC 5 cut(s) 64, 543, 668, 1334, 1557
FspBI CTAG 1 cut(s) 731
GlaI GCGC 1 cut(s) 37
GluI GCNGC 5 cut(s) 64, 543, 668, 1334, 1557
GsaI CCCAGC 3 cut(s) 299, 311, 327
GsuI CTGGAG 1 cut(s) 1705
HaeIII GGCC 3 cut(s) 291, 386, 772
HapII CCGG 3 cut(s) 403, 1639, 1698
HgaI GACGC 3 cut(s) 55, 69, 1553
HhaI GCGC 1 cut(s) 38
Hin1II CATG 9 cut(s) 209, 398, 588, 698, 738, 1147, 1275, 1284, 1376
Hin6I GCGC 1 cut(s) 36
HinP1I GCGC 1 cut(s) 36
HpaII CCGG 3 cut(s) 403, 1639, 1698
HphI GGTGA 3 cut(s) 528, 987, 1463
Hpy166II GTNNAC 3 cut(s) 631, 1328, 1532
Hpy188I TCNGA 9 cut(s) 59, 140, 702, 827, 1131, 1310, 1321, 1404, 1447
Hpy8I GTNNAC 3 cut(s) 631, 1328, 1532
HpyAV CCTTC 8 cut(s) 514, 707, 773, 1411, 1562, 1575, 1623, 1672
HpyCH4III ACNGT 2 cut(s) 451, 469
HpyCH4IV ACGT 4 cut(s) 885, 1104, 1344, 1644
HpyF10VI GCNNNNNNNGC 5 cut(s) 292, 899, 1553, 1661, 1691
HpyF3I CTNAG 4 cut(s) 563, 1034, 1163, 1550
HpySE526I ACGT 4 cut(s) 885, 1104, 1344, 1644
Hsp92II CATG 9 cut(s) 209, 398, 588, 698, 738, 1147, 1275, 1284, 1376
HspAI GCGC 1 cut(s) 36
Kzo9I GATC 4 cut(s) 697, 860, 1091, 1310
LmnI GCTCC 2 cut(s) 1048, 1307
Lsp1109I GCAGC 5 cut(s) 50, 529, 654, 1320, 1543
LweI GCATC 4 cut(s) 747, 845, 1256, 1703
MaeI CTAG 1 cut(s) 731
MaeII ACGT 4 cut(s) 885, 1104, 1344, 1644
MaeIII GTNAC 1 cut(s) 494
MalI GATC 4 cut(s) 699, 862, 1093, 1312
MboI GATC 4 cut(s) 697, 860, 1091, 1310
MboII GAAGA 4 cut(s) 122, 929, 1286, 1739
MfeI CAATTG 2 cut(s) 639, 774
MflI RGATCY 1 cut(s) 860
MhlI GDGCHC 1 cut(s) 121
MlsI TGGCCA 1 cut(s) 772
MluI ACGCGT 1 cut(s) 1504
MluNI TGGCCA 1 cut(s) 772
MlyI GAGTC 2 cut(s) 664, 1285
MmeI TCCRAC 2 cut(s) 118, 1161
Mox20I TGGCCA 1 cut(s) 772
Mph1103I ATGCAT 2 cut(s) 740, 838
MscI TGGCCA 1 cut(s) 772
Msp20I TGGCCA 1 cut(s) 772
MspA1I CMGCKG 2 cut(s) 542, 1024
MspCI CTTAAG 1 cut(s) 671
MspI CCGG 3 cut(s) 403, 1639, 1698
MspR9I CCNGG 2 cut(s) 288, 367
MunI CAATTG 2 cut(s) 639, 774
MvaI CCWGG 2 cut(s) 288, 367
MvnI CGCG 2 cut(s) 38, 1506
MwoI GCNNNNNNNGC 5 cut(s) 292, 899, 1553, 1661, 1691
NdeII GATC 4 cut(s) 697, 860, 1091, 1310
NlaIII CATG 9 cut(s) 209, 398, 588, 698, 738, 1147, 1275, 1284, 1376
NlaIV GGNNCC 2 cut(s) 142, 1489
NsiI ATGCAT 2 cut(s) 740, 838
NspI RCATGY 3 cut(s) 209, 588, 738
PaeI GCATGC 1 cut(s) 738
PaeR7I CTCGAG 2 cut(s) 708, 1087
PagI TCATGA 1 cut(s) 694
PaqCI CACCTGC 1 cut(s) 1066
PasI CCCWGGG 1 cut(s) 366
PceI AGGCCT 1 cut(s) 386
PciI ACATGT 1 cut(s) 205
PfeI GAWTC 8 cut(s) 16, 41, 238, 354, 533, 571, 622, 691
Pfl23II CGTACG 1 cut(s) 882
PinAI ACCGGT 1 cut(s) 402
PkrI GCNGC 5 cut(s) 65, 544, 669, 1335, 1558
PleI GAGTC 2 cut(s) 663, 1285
PpsI GAGTC 2 cut(s) 663, 1285
Ppu21I YACGTR 1 cut(s) 886
PpuMI RGGWCCY 1 cut(s) 1152
PscI ACATGT 1 cut(s) 205
Psp5II RGGWCCY 1 cut(s) 1152
Psp6I CCWGG 2 cut(s) 286, 365
PspFI CCCAGC 3 cut(s) 295, 307, 323
PspGI CCWGG 2 cut(s) 286, 365
PspLI CGTACG 1 cut(s) 882
PspN4I GGNNCC 2 cut(s) 142, 1489
PspPI GGNCC 4 cut(s) 24, 140, 716, 1152
PspPPI RGGWCCY 1 cut(s) 1152
PstI CTGCAG 1 cut(s) 547
PstNI CAGNNNCTG 1 cut(s) 63
PsuI RGATCY 1 cut(s) 860
PvuII CAGCTG 1 cut(s) 1024
RsaI GTAC 5 cut(s) 255, 407, 466, 506, 884
RsaNI GTAC 5 cut(s) 254, 406, 465, 505, 883
SatI GCNGC 5 cut(s) 64, 543, 668, 1334, 1557
Sau3AI GATC 4 cut(s) 697, 860, 1091, 1310
Sau96I GGNCC 4 cut(s) 24, 140, 716, 1152
SchI GAGTC 2 cut(s) 664, 1285
ScrFI CCNGG 2 cut(s) 288, 367
SduI GDGCHC 1 cut(s) 121
SfaNI GCATC 4 cut(s) 747, 845, 1256, 1703
SfcI CTRYAG 2 cut(s) 468, 543
Sfr274I CTCGAG 2 cut(s) 708, 1087
SinI GGWCC 4 cut(s) 24, 140, 716, 1152
SlaI CTCGAG 2 cut(s) 708, 1087
SmlI CTYRAG 5 cut(s) 671, 708, 811, 1087, 1539
SmoI CTYRAG 5 cut(s) 671, 708, 811, 1087, 1539
SphI GCATGC 1 cut(s) 738
SseBI AGGCCT 1 cut(s) 386
SsiI CCGC 3 cut(s) 38, 540, 1370
SspMI CTAG 1 cut(s) 731
StuI AGGCCT 1 cut(s) 386
StyD4I CCNGG 2 cut(s) 286, 365
StyI CCWWGG 1 cut(s) 112
TaaI ACNGT 2 cut(s) 451, 469
TaiI ACGT 4 cut(s) 888, 1107, 1347, 1647
TaqI TCGA 9 cut(s) 685, 709, 940, 973, 1012, 1088, 1212, 1313, 1566
TatI WGTACW 1 cut(s) 464
TfiI GAWTC 8 cut(s) 16, 41, 238, 354, 533, 571, 622, 691
TscAI CASTG 2 cut(s) 640, 1729
TseI GCWGC 5 cut(s) 63, 542, 667, 1333, 1556
TspDTI ATGAA 5 cut(s) 683, 927, 1230, 1269, 1389
TspGWI ACGGA 1 cut(s) 1539
TspRI CASTG 2 cut(s) 640, 1729
Vha464I CTTAAG 1 cut(s) 671
VpaK11BI GGWCC 4 cut(s) 24, 140, 716, 1152
XapI RAATTY 6 cut(s) 72, 413, 905, 1315, 1613, 1634
XceI RCATGY 3 cut(s) 209, 588, 738
XhoI CTCGAG 2 cut(s) 708, 1087
XspI CTAG 1 cut(s) 731
Zsp2I ATGCAT 2 cut(s) 740, 838
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.