MD02G1170500.v1.1

membrane

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Reverse (-)
14751981 .. 14756101
4121 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1170500.v1.1.491

Sequence Viewer

Length: 1758 bp
ATGCCGATGTTCCTGAATCTCTGGGCGTTTTTTGGTGCGGATTCCCCACAATCTTTCAGACGCTGCCTCAAAATTTTCTATCTGGTTTTTGCATTCGGCTCTGCTCTCTGCCTTGGTGCTCTTAAAAGTCTTCTGGTGGGACCCATATCTGCACTAATACTGATTTTAGGGAACGTTGGGATAATTCTAGGTTTGTTTCCTGCACATGTTGCCTGGACGATCTACACTCTCATAAAGATTCACAGATTTGATGTACCACTTAAAATTGCAATTTTGTTTGCCTTGCCTGGCCTGCTGGGTATATGGCTGGGTTTGAGCATAGCTGGGAGTGTTCTGTTGGGTGTGGGATATGGCTTCTTGACTCCCTGGGTTTCCACTTTTGAGGCCTTTAGGCATGACAACCAGTACAAGAAATTCAAACATTGTATTCTTGATGGAACTTGGGGGACTGTTAAAGGAAGCTGTACTGTAGTTAGAGACTTTGCAGACCTGTGTTACCACTCTTACCCGCTTTACTTGAAGGAGTTGAGAGAATCACCCGCTGCAGAGGAAGTTCGCACTCTAAGGTTGATTCACATTCCAGCATGTATTATAGTTGGCGTGTTGGGGCTTATCGTGGAGATCCCTGTTTACACTGCAATTGCTGTTGTAAAGAGTCCCTATATGCTGCTTAAGGGCTGGTATCGGCTAATTCATGATCTGATTACTCGAGAAGGTCCATTTCTTGAAATAGCTTGCGTCCCCATTGCTGGTTTGACGATCATTCTGTGGCCAATTGTGGTTGTTGCAAGCATCATATTGGCAGTTTTCTCGAGCATTTTAATTGGATTGTATGCATCAGTTGTCGTATATCAGGAAAGATCTTTCAGGAAGGGTGTGGCATATGTGATTGCAATGGTGGCAGAATTTGATGAGTACACGAATGACTGGCTGTATCTTCGAGAGGGAACAATCTTTCCAAAGCCCAAATATCGAAAAAGAGCTGTCTCTCAATCACCGGAATTCTCTGTTCGAGGAAATCAGCTGGATGAAGGTAAACCAAGTGCTGCTCGTATGGAAGCACCTGCAATGCTTATGCCAAGTGTAGCCCATTCAAGATCAGTTAGAGCCGTTATACAAGAAGTGAAAATGGTTCAGATATGGGAAAACATGATGAGATCGTGCGAACTGAGGGGCAAGGCATTGTTGGATGATAATGTAATAACCACAACTGACCTCGATGAATGGTTGAAAGCAAAGAACAGCAACGAAGCATCAATTATCGGTGTTGGTTTGCCTAGTTATTCATTCTTGCAGACTCTGCTATGCTCCATCAGATCAAATTCAGATGGTTTACTGCTGCTGGATAACGTTGAAGTTAACTACTTAAATAGACCGCATGACAAATTGGTGGACTGGTTCTTCAATCCGATAATGGTCCTGAAGGAACAGATTAAGGTCTTACAATTGGCGGAGGGTGAGGTTAGATATTTGGAGAAAGTGGTTCTTTTTGGAAGCAATAATCCACAACGCTTAGAGGCTTGGGATAGCGGAAGTTTACTACCTCAAGACGCTGTAAGAGCTGCTCAAATCGAAGGCATTAGTAGAAGGATGATTGGAATGATGAGAAGTGTCTCAAAATTTCCCACTTACAGAAGGAAATTCCGGCACGTTGTCAAGACTCTACTCGCATATTCCTTACCCAAGGAGGCTTCAATCGAAGCCGGTTCTGTTAAATCTACCATCTCCAGTGAAGATGTTGTGCTGGATGAACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

586

Amino Acids

65.5

Weight (kDa)

8.85

Isoelectric Point (pI)

42.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1072
Acc36I ACCTGC 1 cut(s) 1072
AciI CCGC 6 cut(s) 38, 509, 540, 1376, 1451, 1530
AclI AACGTT 2 cut(s) 174, 1350
AclWI GGATC 1 cut(s) 616
AcoI YGGCCR 1 cut(s) 770
AcsI RAATTY 7 cut(s) 72, 413, 905, 1001, 1321, 1619, 1640
AcuI CTGAAG 1 cut(s) 1442
AfaI GTAC 4 cut(s) 255, 407, 466, 917
AfiI CCNNNNNNNGG 1 cut(s) 749
AflII CTTAAG 1 cut(s) 671
AflIII ACRYGT 1 cut(s) 205
AgsI TTSAA 8 cut(s) 418, 520, 728, 1095, 1231, 1355, 1405, 1695
AjnI CCWGG 3 cut(s) 212, 286, 365
AloI GAACNNNNNNTCC 2 cut(s) 940, 972
AluBI AGCT 6 cut(s) 323, 462, 734, 983, 1024, 1562
AluI AGCT 6 cut(s) 323, 462, 734, 983, 1024, 1562
Alw21I GWGCWC 1 cut(s) 121
Alw26I GTCTC 3 cut(s) 471, 991, 1618
AlwI GGATC 1 cut(s) 616
AlwNI CAGNNNCTG 2 cut(s) 63, 1300
Ama87I CYCGRG 2 cut(s) 708, 811
AoxI GGCC 3 cut(s) 289, 384, 770
ApeKI GCWGC 6 cut(s) 63, 542, 667, 1046, 1339, 1562
ApoI RAATTY 7 cut(s) 72, 413, 905, 1001, 1321, 1619, 1640
AspS9I GGNCC 3 cut(s) 140, 716, 1417
AsuHPI GGTGA 3 cut(s) 528, 987, 1469
AvaI CYCGRG 2 cut(s) 708, 811
AvaII GGWCC 3 cut(s) 140, 716, 1417
BalI TGGCCA 1 cut(s) 772
BbsI GAAGAC 1 cut(s) 122
Bbv12I GWGCWC 1 cut(s) 121
BbvI GCAGC 6 cut(s) 50, 529, 654, 1033, 1326, 1549
BccI CCATC 4 cut(s) 428, 1319, 1322, 1730
BceAI ACGGC 1 cut(s) 1094
BcgI CGANNNNNNTGC 2 cut(s) 792, 826
BciT130I CCWGG 3 cut(s) 214, 288, 367
BcoDI GTCTC 3 cut(s) 471, 991, 1618
BfaI CTAG 2 cut(s) 188, 1278
BfmI CTRYAG 2 cut(s) 468, 543
BfrI CTTAAG 1 cut(s) 671
BfuAI ACCTGC 1 cut(s) 1072
BglII AGATCT 1 cut(s) 860
BisI GCNGC 6 cut(s) 64, 543, 668, 1047, 1340, 1563
BlsI GCNGC 6 cut(s) 65, 544, 669, 1048, 1341, 1564
Bme1390I CCNGG 3 cut(s) 214, 288, 367
Bme18I GGWCC 3 cut(s) 140, 716, 1417
BmeT110I CYCGRG 2 cut(s) 708, 811
BmgT120I GGNCC 3 cut(s) 140, 716, 1417
BmiI GGNNCC 2 cut(s) 141, 142
BmrFI CCNGG 3 cut(s) 214, 288, 367
BmsI GCATC 3 cut(s) 801, 845, 1262
BpiI GAAGAC 1 cut(s) 122
BpmI CTGGAG 1 cut(s) 1711
BpuEI CTTGAG 1 cut(s) 1530
BsaJI CCNNGG 4 cut(s) 112, 365, 366, 1683
BsaWI WCCGGW 1 cut(s) 997
Bsc4I CCNNNNNNNGG 1 cut(s) 749
Bse118I RCCGGY 1 cut(s) 1703
Bse1I ACTGG 4 cut(s) 403, 932, 1400, 1728
Bse3DI GCAATG 3 cut(s) 744, 900, 1074
BseBI CCWGG 3 cut(s) 214, 288, 367
BseDI CCNNGG 4 cut(s) 112, 365, 366, 1683
BseGI GGATG 4 cut(s) 1033, 1195, 1596, 1753
BseLI CCNNNNNNNGG 1 cut(s) 749
BseMI GCAATG 3 cut(s) 744, 900, 1074
BseMII CTCAG 1 cut(s) 1160
BseNI ACTGG 4 cut(s) 403, 932, 1400, 1728
BseXI GCAGC 6 cut(s) 50, 529, 654, 1033, 1326, 1549
BseYI CCCAGC 3 cut(s) 295, 307, 323
BsgI GTGCAG 2 cut(s) 135, 186
BshFI GGCC 3 cut(s) 291, 386, 772
BsiHKAI GWGCWC 1 cut(s) 121
BsiHKCI CYCGRG 2 cut(s) 708, 811
BsiSI CCGG 3 cut(s) 998, 1645, 1704
BslFI GGGAC 4 cut(s) 153, 460, 642, 725
BslI CCNNNNNNNGG 1 cut(s) 749
BsmAI GTCTC 3 cut(s) 471, 991, 1618
BsmFI GGGAC 4 cut(s) 153, 460, 642, 725
BsmI GAATGC 1 cut(s) 92
BsnI GGCC 3 cut(s) 291, 386, 772
BsoBI CYCGRG 2 cut(s) 708, 811
Bsp1286I GDGCHC 1 cut(s) 121
Bsp143I GATC 8 cut(s) 219, 621, 697, 759, 860, 1097, 1157, 1316
BspACI CCGC 6 cut(s) 38, 509, 540, 1376, 1451, 1530
BspANI GGCC 3 cut(s) 291, 386, 772
BspCNI CTCAG 1 cut(s) 1161
BspHI TCATGA 1 cut(s) 694
BspLI GGNNCC 2 cut(s) 141, 142
BspMAI CTGCAG 1 cut(s) 547
BspMI ACCTGC 1 cut(s) 1072
BspPI GGATC 1 cut(s) 616
BspTI CTTAAG 1 cut(s) 671
BsrDI GCAATG 3 cut(s) 744, 900, 1074
BsrFI RCCGGY 1 cut(s) 1703
BsrI ACTGG 4 cut(s) 403, 932, 1400, 1728
BssAI RCCGGY 1 cut(s) 1703
BssECI CCNNGG 4 cut(s) 112, 365, 366, 1683
BssMI GATC 8 cut(s) 219, 621, 697, 759, 860, 1097, 1157, 1316
BssT1I CCWWGG 2 cut(s) 112, 1683
Bst2UI CCWGG 3 cut(s) 214, 288, 367
Bst4CI ACNGT 2 cut(s) 451, 469
BstAFI CTTAAG 1 cut(s) 671
BstAPI GCANNNNNTGC 2 cut(s) 209, 1300
BstC8I GCNNGC 3 cut(s) 293, 736, 790
BstDEI CTNAG 3 cut(s) 563, 1169, 1513
BstF5I GGATG 4 cut(s) 1033, 1195, 1596, 1753
BstKTI GATC 8 cut(s) 222, 624, 700, 762, 863, 1100, 1160, 1319
BstMAI GTCTC 3 cut(s) 471, 991, 1618
BstMBI GATC 8 cut(s) 219, 621, 697, 759, 860, 1097, 1157, 1316
BstMWI GCNNNNNNNGC 5 cut(s) 209, 292, 899, 1300, 1559
BstNI CCWGG 3 cut(s) 214, 288, 367
BstNSI RCATGY 2 cut(s) 209, 588
BstSCI CCNGG 3 cut(s) 212, 286, 365
BstSFI CTRYAG 2 cut(s) 468, 543
BstV1I GCAGC 6 cut(s) 50, 529, 654, 1033, 1326, 1549
BstV2I GAAGAC 1 cut(s) 122
BstX2I RGATCY 2 cut(s) 621, 860
BstYI RGATCY 2 cut(s) 621, 860
BsuRI GGCC 3 cut(s) 291, 386, 772
BtsCI GGATG 4 cut(s) 1033, 1195, 1596, 1753
BtsI GCAGTG 1 cut(s) 633
BtsIMutI CAGTG 2 cut(s) 633, 1735
BveI ACCTGC 1 cut(s) 1072
Cac8I GCNNGC 3 cut(s) 293, 736, 790
CaiI CAGNNNCTG 2 cut(s) 63, 1300
CciI TCATGA 1 cut(s) 694
Cfr10I RCCGGY 1 cut(s) 1703
Cfr13I GGNCC 3 cut(s) 140, 716, 1417
CseI GACGC 3 cut(s) 69, 727, 1559
Csp6I GTAC 4 cut(s) 254, 406, 465, 916
CviAII CATG 6 cut(s) 206, 395, 585, 695, 1150, 1379
CviQI GTAC 4 cut(s) 254, 406, 465, 916
DdeI CTNAG 3 cut(s) 563, 1169, 1513
DpnI GATC 8 cut(s) 221, 623, 699, 761, 862, 1099, 1159, 1318
DpnII GATC 8 cut(s) 219, 621, 697, 759, 860, 1097, 1157, 1316
EaeI YGGCCR 1 cut(s) 770
EciI GGCGGA 1 cut(s) 1466
Eco130I CCWWGG 2 cut(s) 112, 1683
Eco147I AGGCCT 1 cut(s) 386
Eco47I GGWCC 3 cut(s) 140, 716, 1417
Eco57I CTGAAG 1 cut(s) 1442
Eco88I CYCGRG 2 cut(s) 708, 811
EcoO109I RGGNCCY 1 cut(s) 140
EcoRI GAATTC 1 cut(s) 1001
EcoRII CCWGG 3 cut(s) 212, 286, 365
EcoT14I CCWWGG 2 cut(s) 112, 1683
EcoT22I ATGCAT 1 cut(s) 838
ErhI CCWWGG 2 cut(s) 112, 1683
FaeI CATG 6 cut(s) 209, 398, 588, 698, 1153, 1382
FalI AAGNNNNNCTT 2 cut(s) 1470, 1502
FaqI GGGAC 4 cut(s) 153, 460, 642, 725
FatI CATG 6 cut(s) 205, 394, 584, 694, 1149, 1378
FauI CCCGC 2 cut(s) 516, 547
FauNDI CATATG 1 cut(s) 883
Fnu4HI GCNGC 6 cut(s) 64, 543, 668, 1047, 1340, 1563
FokI GGATG 3 cut(s) 1040, 1202, 1603
Fsp4HI GCNGC 6 cut(s) 64, 543, 668, 1047, 1340, 1563
FspBI CTAG 2 cut(s) 188, 1278
GluI GCNGC 6 cut(s) 64, 543, 668, 1047, 1340, 1563
GsaI CCCAGC 3 cut(s) 299, 311, 327
GsuI CTGGAG 1 cut(s) 1711
HaeIII GGCC 3 cut(s) 291, 386, 772
HapII CCGG 3 cut(s) 998, 1645, 1704
HgaI GACGC 3 cut(s) 69, 727, 1559
Hin1II CATG 6 cut(s) 209, 398, 588, 698, 1153, 1382
HincII GTYRAC 1 cut(s) 1360
HindII GTYRAC 1 cut(s) 1360
HinfI GANTC 9 cut(s) 16, 41, 238, 361, 533, 571, 655, 1297, 1660
HpaI GTTAAC 1 cut(s) 1360
HpaII CCGG 3 cut(s) 998, 1645, 1704
HphI GGTGA 3 cut(s) 528, 987, 1469
Hpy166II GTNNAC 7 cut(s) 631, 918, 1037, 1334, 1360, 1393, 1538
Hpy188I TCNGA 6 cut(s) 59, 702, 1137, 1316, 1327, 1410
Hpy8I GTNNAC 7 cut(s) 631, 918, 1037, 1334, 1360, 1393, 1538
HpyAV CCTTC 8 cut(s) 514, 707, 865, 1025, 1417, 1568, 1581, 1629
HpyCH4III ACNGT 2 cut(s) 451, 469
HpyCH4IV ACGT 3 cut(s) 174, 1350, 1650
HpyF10VI GCNNNNNNNGC 5 cut(s) 209, 292, 899, 1300, 1559
HpyF3I CTNAG 3 cut(s) 563, 1169, 1513
HpySE526I ACGT 3 cut(s) 174, 1350, 1650
Hsp92II CATG 6 cut(s) 209, 398, 588, 698, 1153, 1382
KflI GGGWCCC 1 cut(s) 140
KspAI GTTAAC 1 cut(s) 1360
Kzo9I GATC 8 cut(s) 219, 621, 697, 759, 860, 1097, 1157, 1316
LmnI GCTCC 1 cut(s) 1313
Lsp1109I GCAGC 6 cut(s) 50, 529, 654, 1033, 1326, 1549
LweI GCATC 3 cut(s) 801, 845, 1262
MaeI CTAG 2 cut(s) 188, 1278
MaeII ACGT 3 cut(s) 174, 1350, 1650
MaeIII GTNAC 1 cut(s) 494
MalI GATC 8 cut(s) 221, 623, 699, 761, 862, 1099, 1159, 1318
MboI GATC 8 cut(s) 219, 621, 697, 759, 860, 1097, 1157, 1316
MboII GAAGA 4 cut(s) 122, 929, 1393, 1745
MfeI CAATTG 3 cut(s) 639, 774, 1445
MflI RGATCY 2 cut(s) 621, 860
MhlI GDGCHC 1 cut(s) 121
MlsI TGGCCA 1 cut(s) 772
MluNI TGGCCA 1 cut(s) 772
MlyI GAGTC 4 cut(s) 355, 664, 1291, 1654
MmeI TCCRAC 1 cut(s) 1167
Mox20I TGGCCA 1 cut(s) 772
Mph1103I ATGCAT 1 cut(s) 838
MscI TGGCCA 1 cut(s) 772
Msp20I TGGCCA 1 cut(s) 772
MspA1I CMGCKG 2 cut(s) 542, 1024
MspCI CTTAAG 1 cut(s) 671
MspI CCGG 3 cut(s) 998, 1645, 1704
MspR9I CCNGG 3 cut(s) 214, 288, 367
MunI CAATTG 3 cut(s) 639, 774, 1445
Mva1269I GAATGC 1 cut(s) 92
MvaI CCWGG 3 cut(s) 214, 288, 367
MwoI GCNNNNNNNGC 5 cut(s) 209, 292, 899, 1300, 1559
NdeI CATATG 1 cut(s) 883
NdeII GATC 8 cut(s) 219, 621, 697, 759, 860, 1097, 1157, 1316
NlaIII CATG 6 cut(s) 209, 398, 588, 698, 1153, 1382
NlaIV GGNNCC 2 cut(s) 141, 142
NsiI ATGCAT 1 cut(s) 838
NspI RCATGY 2 cut(s) 209, 588
PaeR7I CTCGAG 2 cut(s) 708, 811
PagI TCATGA 1 cut(s) 694
PaqCI CACCTGC 1 cut(s) 1072
PasI CCCWGGG 1 cut(s) 366
PceI AGGCCT 1 cut(s) 386
PciI ACATGT 1 cut(s) 205
PctI GAATGC 1 cut(s) 92
PfeI GAWTC 5 cut(s) 16, 41, 238, 533, 571
PkrI GCNGC 6 cut(s) 65, 544, 669, 1048, 1341, 1564
PleI GAGTC 4 cut(s) 355, 663, 1291, 1654
PpsI GAGTC 4 cut(s) 355, 663, 1291, 1654
PpuMI RGGWCCY 1 cut(s) 140
PscI ACATGT 1 cut(s) 205
Psp1406I AACGTT 2 cut(s) 174, 1350
Psp5II RGGWCCY 1 cut(s) 140
Psp6I CCWGG 3 cut(s) 212, 286, 365
PspFI CCCAGC 3 cut(s) 295, 307, 323
PspGI CCWGG 3 cut(s) 212, 286, 365
PspN4I GGNNCC 2 cut(s) 141, 142
PspPI GGNCC 3 cut(s) 140, 716, 1417
PspPPI RGGWCCY 1 cut(s) 140
PstI CTGCAG 1 cut(s) 547
PstNI CAGNNNCTG 2 cut(s) 63, 1300
PsuI RGATCY 2 cut(s) 621, 860
PvuII CAGCTG 1 cut(s) 1024
RsaI GTAC 4 cut(s) 255, 407, 466, 917
RsaNI GTAC 4 cut(s) 254, 406, 465, 916
SatI GCNGC 6 cut(s) 64, 543, 668, 1047, 1340, 1563
Sau3AI GATC 8 cut(s) 219, 621, 697, 759, 860, 1097, 1157, 1316
Sau96I GGNCC 3 cut(s) 140, 716, 1417
SchI GAGTC 4 cut(s) 355, 664, 1291, 1654
ScrFI CCNGG 3 cut(s) 214, 288, 367
SduI GDGCHC 1 cut(s) 121
SfaNI GCATC 3 cut(s) 801, 845, 1262
SfcI CTRYAG 2 cut(s) 468, 543
Sfr274I CTCGAG 2 cut(s) 708, 811
SinI GGWCC 3 cut(s) 140, 716, 1417
SlaI CTCGAG 2 cut(s) 708, 811
SmlI CTYRAG 4 cut(s) 671, 708, 811, 1545
SmoI CTYRAG 4 cut(s) 671, 708, 811, 1545
SseBI AGGCCT 1 cut(s) 386
SsiI CCGC 6 cut(s) 38, 509, 540, 1376, 1451, 1530
SspMI CTAG 2 cut(s) 188, 1278
StuI AGGCCT 1 cut(s) 386
StyD4I CCNGG 3 cut(s) 212, 286, 365
StyI CCWWGG 2 cut(s) 112, 1683
TaaI ACNGT 2 cut(s) 451, 469
TaiI ACGT 3 cut(s) 177, 1353, 1653
TaqI TCGA 8 cut(s) 709, 812, 940, 973, 1012, 1218, 1572, 1698
TatI WGTACW 3 cut(s) 405, 464, 915
TfiI GAWTC 5 cut(s) 16, 41, 238, 533, 571
TscAI CASTG 2 cut(s) 640, 1735
TseI GCWGC 6 cut(s) 63, 542, 667, 1046, 1339, 1562
TspDTI ATGAA 4 cut(s) 683, 1044, 1236, 1275
TspRI CASTG 2 cut(s) 640, 1735
Vha464I CTTAAG 1 cut(s) 671
VpaK11BI GGWCC 3 cut(s) 140, 716, 1417
XapI RAATTY 7 cut(s) 72, 413, 905, 1001, 1321, 1619, 1640
XceI RCATGY 2 cut(s) 209, 588
XhoI CTCGAG 2 cut(s) 708, 811
XspI CTAG 2 cut(s) 188, 1278
Zsp2I ATGCAT 1 cut(s) 838
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.