Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0011724

Physical Location & Seq

Genomic Coordinates Forward (+)

9663518 .. 9666258

Gene Structure 2741 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g16680.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGTCCCTGCAACTACAAGATTCCGAAGAGCTCCAAAACCCACCAATGTTCTTAGATACTTTGTTCTGTGAAGAAGGTTTTGAGGGAGAAGAAGAAGCAGAAGAAGATTTGGGAGACAATGGTGTTGAAGAACAGAGTGAGAGCTGTTTTGACACTGTGGAAAAACAGCCTTTTTCCACTTTGGTTATGTCAAAAGGTGACTTGTTTTGGGAAGAAGATGAACTTGTTTCTCTAATTTCAAAAGAGAAACAAACCCATGTCTGTTTCAGTGGTTCAATCTCAGATGGGTCTTTAACGTTGGCTAGGAAAGAAGCATTAGTGTGGATTTTGAGTGTGAAATCACACTATGGGTTCTCTTGTTTGACCACGGTTCTAGCTATGAACTACTTTGATCGGTTCAGTTCAAGCTTGGTGTTTCAAAAGGATAAGCCTTGGATGACTCAACTCACTGCTGTGGCTTGTCTCTCTCTGGCTGCCAAAGTGGAAGAGACCCATATGCCCCTTCTCTTGGATTTGCAAGTGGAGGAATCAAAGTATGTATTTGAGGCCAGGACTATTCAAAGAATGGAGCTTTTGGTACTTACAACTCTCGACTGGAGGATGAATCCAGTAACACCAAATTCGTTCTTTGATCACATGATCAGGAGGCTTGGTTTGAAGACCCATTTGCATTCGGAATTTCTCTGGAGATGTGAGCGCCTCCTTCTCTGTGTCATTGCAGACACCAGATTTCTGGTCTTTCTACCTTCTATAGTAGCTGCTGCAATAATGCTGTATGTTATTAATGAGATTGAAACATTCAATCCTGTGGAGTATCAGAATCAGGTTTTGAGTGTACTCAAAGTCAGCCAGGGCACAGTCAGTGAATGCTACAAGCTTATCTTGGTAGTATCGGTCAGAACTGTGCAAAACCAAGGGCATAAACGCAAGCATTCCTCCATACCTAGCAGCCCAAGTGGAGTTACAGATATATCGTTCAGCTCTGATACCTCAAATGATTCCTGGGCTGTGGCTTCACCGGTCTCATCTTTACCAGACGCTCGATTTAAAAGGAGCAGACTTCAGGACCAGCAGATGCGGCTGCCCTCGTTAAATCGTGTATCTGTTGATGTGCTTAGCAGCAGTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009987 GO:0010154 GO:0010374 GO:0010440 GO:0010444 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0090558 GO:0090627

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

377

Amino Acids

42.62

Weight (kDa)

4.95

Isoelectric Point (pI)

57.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	100 - 202	4.6e-24	Cyclin, N-terminal domain
Cyclin_C	PF02984	204 - 313	4.3e-16	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011724)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50070
fragaria_vesca	FvH4_1g16680
malus_domestica	MD02G1178200.v1.1 MD15G1288100.v1.1
prunus_persica	Prupe.6G229700_v2.0.a1 Prupe.6G229700_v2.0.a1 Prupe.6G229700_v2.0.a1
pyrus_communis	pycom02g14430 pycom15g25160
rosa_chinensis	RchiOBHm_Chr2g0106601
rosa_laevigata	RLG00000017519
rosa_multiflora	Rmu_sc0006221.1_g000010
rosa_roxburghii	Rroxscaffold_2G00136990
rosa_rugosa	Rorug02G0136600
rosa_samantha	Rh2AG187800 Rh2BG198800 Rh2CG192900 Rh2DG194000
rosa_wichuraiana	Rw2G014740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	1078
AclI	AACGTT	1 cut(s)	296
AcsI	RAATTY	2 cut(s)	619, 677
AcuI	CTGAAG	1 cut(s)	1046
AfaI	GTAC	2 cut(s)	579, 837
AfiI	CCNNNNNNNGG	1 cut(s)	508
AgeI	ACCGGT	1 cut(s)	1018
AgsI	TTSAA	9 cut(s)	128, 240, 276, 405, 419, 560, 658, 794, 802
AjnI	CCWGG	3 cut(s)	548, 849, 1001
AleI	CACNNNNGTG	1 cut(s)	452
AluBI	AGCT	8 cut(s)	31, 144, 377, 408, 571, 758, 877, 981
AluI	AGCT	8 cut(s)	31, 144, 377, 408, 571, 758, 877, 981
Alw21I	GWGCWC	1 cut(s)	33
Alw26I	GTCTC	4 cut(s)	108, 467, 482, 1027
AoxI	GGCC	1 cut(s)	546
ApeKI	GCWGC	6 cut(s)	473, 758, 761, 948, 1081, 1119
ApoI	RAATTY	2 cut(s)	619, 677
AseI	ATTAAT	1 cut(s)	783
AsiGI	ACCGGT	1 cut(s)	1018
AspLEI	GCGC	1 cut(s)	699
AspS9I	GGNCC	1 cut(s)	1066
AsuHPI	GGTGA	2 cut(s)	209, 1008
AvaII	GGWCC	1 cut(s)	1066
BaeGI	GKGCMC	1 cut(s)	857
BanII	GRGCYC	1 cut(s)	33
BbsI	GAAGAC	1 cut(s)	665
Bbv12I	GWGCWC	1 cut(s)	33
BbvI	GCAGC	5 cut(s)	460, 745, 748, 960, 1068
BccI	CCATC	1 cut(s)	278
BciT130I	CCWGG	3 cut(s)	550, 851, 1003
BclI	TGATCA	2 cut(s)	631, 639
BcoDI	GTCTC	4 cut(s)	108, 467, 482, 1027
BfaI	CTAG	3 cut(s)	303, 374, 945
BfmI	CTRYAG	1 cut(s)	750
BfoI	RGCGCY	1 cut(s)	700
BisI	GCNGC	7 cut(s)	474, 759, 762, 949, 1079, 1082, 1120
BlpI	GCTNAGC	1 cut(s)	1115
BlsI	GCNGC	7 cut(s)	475, 760, 763, 950, 1080, 1083, 1121
Bme1390I	CCNGG	3 cut(s)	550, 851, 1003
Bme18I	GGWCC	1 cut(s)	1066
BmgT120I	GGNCC	1 cut(s)	1066
BmrFI	CCNGG	3 cut(s)	550, 851, 1003
BmsI	GCATC	1 cut(s)	1065
BpiI	GAAGAC	1 cut(s)	665
BpmI	CTGGAG	2 cut(s)	616, 706
Bpu1102I	GCTNAGC	1 cut(s)	1115
BsaI	GGTCTC	2 cut(s)	482, 1027
BsaJI	CCNNGG	5 cut(s)	366, 431, 850, 913, 1002
BsaWI	WCCGGW	1 cut(s)	1018
BsaXI	ACNNNNNCTCC	2 cut(s)	637, 667
Bsc4I	CCNNNNNNNGG	1 cut(s)	508
Bse118I	RCCGGY	1 cut(s)	1018
Bse1I	ACTGG	2 cut(s)	599, 608
Bse3DI	GCAATG	1 cut(s)	714
BseBI	CCWGG	3 cut(s)	550, 851, 1003
BseDI	CCNNGG	5 cut(s)	366, 431, 850, 913, 1002
BseGI	GGATG	2 cut(s)	441, 606
BseLI	CCNNNNNNNGG	1 cut(s)	508
BseMI	GCAATG	1 cut(s)	714
BseMII	CTCAG	1 cut(s)	294
BseNI	ACTGG	2 cut(s)	599, 608
BseSI	GKGCMC	1 cut(s)	857
BseXI	GCAGC	5 cut(s)	460, 745, 748, 960, 1068
BshFI	GGCC	1 cut(s)	548
BshTI	ACCGGT	1 cut(s)	1018
BsiHKAI	GWGCWC	1 cut(s)	33
BsiSI	CCGG	1 cut(s)	1019
BslI	CCNNNNNNNGG	1 cut(s)	508
BsmAI	GTCTC	4 cut(s)	108, 467, 482, 1027
BsmI	GAATGC	3 cut(s)	670, 872, 931
BsnI	GGCC	1 cut(s)	548
Bso31I	GGTCTC	2 cut(s)	482, 1027
Bsp1286I	GDGCHC	2 cut(s)	33, 857
Bsp143I	GATC	3 cut(s)	391, 631, 639
Bsp1720I	GCTNAGC	1 cut(s)	1115
BspACI	CCGC	1 cut(s)	1078
BspANI	GGCC	1 cut(s)	548
BspCNI	CTCAG	1 cut(s)	293
BspQI	GCTCTTC	1 cut(s)	21
BspTNI	GGTCTC	2 cut(s)	482, 1027
BsrDI	GCAATG	1 cut(s)	714
BsrFI	RCCGGY	1 cut(s)	1018
BsrI	ACTGG	2 cut(s)	599, 608
BssAI	RCCGGY	1 cut(s)	1018
BssECI	CCNNGG	5 cut(s)	366, 431, 850, 913, 1002
BssMI	GATC	3 cut(s)	391, 631, 639
BssT1I	CCWWGG	2 cut(s)	431, 913
Bst2UI	CCWGG	3 cut(s)	550, 851, 1003
Bst4CI	ACNGT	4 cut(s)	157, 370, 859, 904
Bst6I	CTCTTC	2 cut(s)	21, 480
BstC8I	GCNNGC	1 cut(s)	929
BstDEI	CTNAG	3 cut(s)	52, 280, 1115
BstDSI	CCRYGG	1 cut(s)	366
BstF5I	GGATG	2 cut(s)	441, 606
BstH2I	RGCGCY	1 cut(s)	700
BstHHI	GCGC	1 cut(s)	699
BstKTI	GATC	3 cut(s)	394, 634, 642
BstMAI	GTCTC	4 cut(s)	108, 467, 482, 1027
BstMBI	GATC	3 cut(s)	391, 631, 639
BstMWI	GCNNNNNNNGC	1 cut(s)	1078
BstNI	CCWGG	3 cut(s)	550, 851, 1003
BstSCI	CCNGG	3 cut(s)	548, 849, 1001
BstSFI	CTRYAG	1 cut(s)	750
BstSLI	GKGCMC	1 cut(s)	857
BstV1I	GCAGC	5 cut(s)	460, 745, 748, 960, 1068
BstV2I	GAAGAC	1 cut(s)	665
BstXI	CCANNNNNNTGG	1 cut(s)	733
BsuRI	GGCC	1 cut(s)	548
BtgI	CCRYGG	1 cut(s)	366
BtsCI	GGATG	2 cut(s)	441, 606
BtsI	GCAGTG	1 cut(s)	447
BtsIMutI	CAGTG	4 cut(s)	153, 274, 447, 868
Cac8I	GCNNGC	1 cut(s)	929
CfoI	GCGC	1 cut(s)	699
Cfr10I	RCCGGY	1 cut(s)	1018
Cfr13I	GGNCC	1 cut(s)	1066
CseI	GACGC	1 cut(s)	1046
Csp6I	GTAC	2 cut(s)	578, 836
CspAI	ACCGGT	1 cut(s)	1018
CviAII	CATG	2 cut(s)	257, 637
CviQI	GTAC	2 cut(s)	578, 836
DdeI	CTNAG	3 cut(s)	52, 280, 1115
DpnI	GATC	3 cut(s)	393, 633, 641
DpnII	GATC	3 cut(s)	391, 631, 639
DraI	TTTAAA	1 cut(s)	1048
Eam1104I	CTCTTC	2 cut(s)	21, 480
EarI	CTCTTC	2 cut(s)	21, 480
Ecl136II	GAGCTC	1 cut(s)	31
Eco130I	CCWWGG	2 cut(s)	431, 913
Eco24I	GRGCYC	1 cut(s)	33
Eco31I	GGTCTC	2 cut(s)	482, 1027
Eco47I	GGWCC	1 cut(s)	1066
Eco53kI	GAGCTC	1 cut(s)	31
Eco57I	CTGAAG	1 cut(s)	1046
EcoICRI	GAGCTC	1 cut(s)	31
EcoRII	CCWGG	3 cut(s)	548, 849, 1001
EcoT14I	CCWWGG	2 cut(s)	431, 913
EcoT38I	GRGCYC	1 cut(s)	33
ErhI	CCWWGG	2 cut(s)	431, 913
FaeI	CATG	2 cut(s)	260, 640
FalI	AAGNNNNNCTT	4 cut(s)	207, 239, 866, 898
FatI	CATG	2 cut(s)	256, 636
FauNDI	CATATG	1 cut(s)	495
FbaI	TGATCA	2 cut(s)	631, 639
Fnu4HI	GCNGC	7 cut(s)	474, 759, 762, 949, 1079, 1082, 1120
FokI	GGATG	2 cut(s)	448, 613
FriOI	GRGCYC	1 cut(s)	33
Fsp4HI	GCNGC	7 cut(s)	474, 759, 762, 949, 1079, 1082, 1120
FspBI	CTAG	3 cut(s)	303, 374, 945
GlaI	GCGC	1 cut(s)	698
GluI	GCNGC	7 cut(s)	474, 759, 762, 949, 1079, 1082, 1120
GsuI	CTGGAG	2 cut(s)	616, 706
HaeII	RGCGCY	1 cut(s)	700
HaeIII	GGCC	1 cut(s)	548
HapII	CCGG	1 cut(s)	1019
HgaI	GACGC	1 cut(s)	1046
HhaI	GCGC	1 cut(s)	699
Hin1II	CATG	2 cut(s)	260, 640
Hin6I	GCGC	1 cut(s)	697
HinP1I	GCGC	1 cut(s)	697
HindIII	AAGCTT	2 cut(s)	406, 875
HinfI	GANTC	6 cut(s)	20, 439, 527, 604, 820, 998
HpaII	CCGG	1 cut(s)	1019
HphI	GGTGA	2 cut(s)	209, 1008
Hpy166II	GTNNAC	1 cut(s)	836
Hpy188I	TCNGA	6 cut(s)	25, 283, 676, 819, 899, 985
Hpy188III	TCNNGA	4 cut(s)	590, 643, 685, 1064
Hpy8I	GTNNAC	1 cut(s)	836
HpyAV	CCTTC	4 cut(s)	68, 512, 713, 756
HpyCH4III	ACNGT	4 cut(s)	157, 370, 859, 904
HpyCH4IV	ACGT	1 cut(s)	296
HpyCH4V	TGCA	6 cut(s)	10, 517, 670, 719, 764, 907
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1078
HpyF3I	CTNAG	3 cut(s)	52, 280, 1115
HpySE526I	ACGT	1 cut(s)	296
Hsp92II	CATG	2 cut(s)	260, 640
HspAI	GCGC	1 cut(s)	697
Ksp22I	TGATCA	2 cut(s)	631, 639
Kzo9I	GATC	3 cut(s)	391, 631, 639
LguI	GCTCTTC	1 cut(s)	21
LmnI	GCTCC	3 cut(s)	36, 568, 1053
Lsp1109I	GCAGC	5 cut(s)	460, 745, 748, 960, 1068
LweI	GCATC	1 cut(s)	1065
MaeI	CTAG	3 cut(s)	303, 374, 945
MaeII	ACGT	1 cut(s)	296
MaeIII	GTNAC	3 cut(s)	197, 610, 961
MalI	GATC	3 cut(s)	393, 633, 641
MboI	GATC	3 cut(s)	391, 631, 639
MhlI	GDGCHC	2 cut(s)	33, 857
MluCI	AATT	3 cut(s)	234, 619, 677
MlyI	GAGTC	1 cut(s)	433
MnlI	CCTC	9 cut(s)	76, 517, 538, 591, 639, 710, 946, 1000, 1096
MseI	TTAA	5 cut(s)	293, 783, 1047, 1091, 1129
MslI	CAYNNNNRTG	2 cut(s)	319, 452
MspI	CCGG	1 cut(s)	1019
MspR9I	CCNGG	3 cut(s)	550, 851, 1003
Mva1269I	GAATGC	3 cut(s)	670, 872, 931
MvaI	CCWGG	3 cut(s)	550, 851, 1003
MwoI	GCNNNNNNNGC	1 cut(s)	1078
NdeI	CATATG	1 cut(s)	495
NdeII	GATC	3 cut(s)	391, 631, 639
NlaIII	CATG	2 cut(s)	260, 640
NmuCI	GTSAC	1 cut(s)	197
OliI	CACNNNNGTG	1 cut(s)	452
PciSI	GCTCTTC	1 cut(s)	21
PctI	GAATGC	3 cut(s)	670, 872, 931
PfeI	GAWTC	5 cut(s)	20, 527, 604, 820, 998
PinAI	ACCGGT	1 cut(s)	1018
PkrI	GCNGC	7 cut(s)	475, 760, 763, 950, 1080, 1083, 1121
PleI	GAGTC	1 cut(s)	433
PpsI	GAGTC	1 cut(s)	433
PshBI	ATTAAT	1 cut(s)	783
Psp124BI	GAGCTC	1 cut(s)	33
Psp1406I	AACGTT	1 cut(s)	296
Psp6I	CCWGG	3 cut(s)	548, 849, 1001
PspGI	CCWGG	3 cut(s)	548, 849, 1001
PspPI	GGNCC	1 cut(s)	1066
RsaI	GTAC	2 cut(s)	579, 837
RsaNI	GTAC	2 cut(s)	578, 836
RseI	CAYNNNNRTG	2 cut(s)	319, 452
SacI	GAGCTC	1 cut(s)	33
SapI	GCTCTTC	1 cut(s)	21
SaqAI	TTAA	5 cut(s)	293, 783, 1047, 1091, 1129
SatI	GCNGC	7 cut(s)	474, 759, 762, 949, 1079, 1082, 1120
Sau3AI	GATC	3 cut(s)	391, 631, 639
Sau96I	GGNCC	1 cut(s)	1066
SchI	GAGTC	1 cut(s)	433
ScrFI	CCNGG	3 cut(s)	550, 851, 1003
SduI	GDGCHC	2 cut(s)	33, 857
SfaNI	GCATC	1 cut(s)	1065
SfcI	CTRYAG	1 cut(s)	750
SinI	GGWCC	1 cut(s)	1066
SmiMI	CAYNNNNRTG	2 cut(s)	319, 452
Sse9I	AATT	3 cut(s)	234, 619, 677
SsiI	CCGC	1 cut(s)	1078
SspMI	CTAG	3 cut(s)	303, 374, 945
SstI	GAGCTC	1 cut(s)	33
StyD4I	CCNGG	3 cut(s)	548, 849, 1001
StyI	CCWWGG	2 cut(s)	431, 913
TaaI	ACNGT	4 cut(s)	157, 370, 859, 904
TaiI	ACGT	1 cut(s)	299
TaqI	TCGA	2 cut(s)	591, 1042
TaqII	GACCGA	1 cut(s)	883
TasI	AATT	3 cut(s)	234, 619, 677
TatI	WGTACW	1 cut(s)	835
TauI	GCSGC	1 cut(s)	1081
TfiI	GAWTC	5 cut(s)	20, 527, 604, 820, 998
Tru1I	TTAA	5 cut(s)	293, 783, 1047, 1091, 1129
Tru9I	TTAA	5 cut(s)	293, 783, 1047, 1091, 1129
TscAI	CASTG	4 cut(s)	160, 274, 454, 868
TseFI	GTSAC	1 cut(s)	197
TseI	GCWGC	6 cut(s)	473, 758, 761, 948, 1081, 1119
Tsp45I	GTSAC	1 cut(s)	197
TspDTI	ATGAA	3 cut(s)	234, 395, 617
TspRI	CASTG	4 cut(s)	160, 274, 454, 868
VpaK11BI	GGWCC	1 cut(s)	1066
VspI	ATTAAT	1 cut(s)	783
XapI	RAATTY	2 cut(s)	619, 677
XspI	CTAG	3 cut(s)	303, 374, 945

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.