Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0011724

Physical Location & Seq

Genomic Coordinates Forward (+)

11955071 .. 11955901

Gene Structure 831 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0136600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGCAATGCTTGAGCAAGGCAAGCAATTGCATGCTTATGTCCTAACGGTTGGTCTAGATTCTGAAGCTATGGTACAAAGTGCCTTGGTCAATCTGTACTCGAAATGTGAAAGTATACAAGAGGCTGCAAAAATCTTTGATGTGACAAAAGCAAAAGATGATGATGTTATTTCATGGACGTCCAAGATTAATGGATATGCTCAACATGGGTACTACCAAGAAGCCATTGATGTGTTTGAGAAGCTTCCTACGGTTGGTCTGAAACCAGACTCAGTTACCTTCATTGGTGTTCTTGCTGCGTGTAGCCATGCTGGACTAGTTGATCTTGGTTTCCACTACTTCAATTCAATGAGCAATGACTTTAAGATTAGTCCTTCAAAAGAACAATACGGCTGCATGATTGATCTCCTTTGTCAAGCTGGACGGTTAAGTGAGGCAGAGCATATTATCAGAAGTATGCCAGTTCAACATGATGATGTTGTCTGGTCTACTCTACTTACAGCATGTAGGCTCCATGGTGATGTTGACTGCGGAAGATGCGCTGCAGAGGAGATTCTTAAATTAAATCCTAATTGTGCAGTGACTCACATAACGCTAGCTAGTGTTTATGCTGCCAAAGGAAAGTGGAGGGAAGCAGCAGCAGTAAGGAGAATGATGAGATCAAAGGGCGTAATTAAGGAACCTGGATGGTCTGGGATAGAGGTCAAGAATGGGATTTCTGTGTTTGTTGCTGGAGATAGGTCTCATCCACAAGGTGATGAGATATATAGTGTGCTGGAATTACTAGATTCAAAGGCAGATATTTCTACTCGGGAAACAGTTCTTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009987 GO:0010154 GO:0010374 GO:0010440 GO:0010444 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0090558 GO:0090627

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

276

Amino Acids

30.34

Weight (kDa)

5.68

Isoelectric Point (pI)

38.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	55 - 102	1.5e-08	PPR repeat family
E_motif	PF20431	172 - 234	3.3e-10	E motif
Eplus_motif	PF20430	242 - 260	2e-06	E+ motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011724)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50070
fragaria_vesca	FvH4_1g16680
malus_domestica	MD02G1178200.v1.1 MD15G1288100.v1.1
prunus_persica	Prupe.6G229700_v2.0.a1 Prupe.6G229700_v2.0.a1 Prupe.6G229700_v2.0.a1
pyrus_communis	pycom02g14430 pycom15g25160
rosa_chinensis	RchiOBHm_Chr2g0106601
rosa_laevigata	RLG00000017519
rosa_multiflora	Rmu_sc0006221.1_g000010
rosa_roxburghii	Rroxscaffold_2G00136990
rosa_rugosa	Rorug02G0136600
rosa_samantha	Rh2AG187800 Rh2BG198800 Rh2CG192900 Rh2DG194000
rosa_wichuraiana	Rw2G014740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	182
AccI	GTMKAC	2 cut(s)	115, 488
AciI	CCGC	1 cut(s)	531
AcuI	CTGAAG	1 cut(s)	84
AcyI	GRCGYC	1 cut(s)	179
AdeI	CACNNNGTG	1 cut(s)	755
AfaI	GTAC	3 cut(s)	75, 98, 212
AfiI	CCNNNNNNNGG	1 cut(s)	254
AgsI	TTSAA	5 cut(s)	343, 348, 378, 467, 792
AhlI	ACTAGT	1 cut(s)	316
AjnI	CCWGG	1 cut(s)	682
AluBI	AGCT	4 cut(s)	68, 244, 419, 599
AluI	AGCT	4 cut(s)	68, 244, 419, 599
Alw26I	GTCTC	1 cut(s)	747
Ama87I	CYCGRG	1 cut(s)	810
ApeKI	GCWGC	7 cut(s)	125, 296, 393, 542, 611, 635, 638
AseI	ATTAAT	1 cut(s)	189
Asp700I	GAANNNNTTC	1 cut(s)	819
AspLEI	GCGC	1 cut(s)	542
AsuHPI	GGTGA	2 cut(s)	530, 767
AsuNHI	GCTAGC	1 cut(s)	595
AvaI	CYCGRG	1 cut(s)	810
BarI	GAAGNNNNNNTAC	2 cut(s)	57, 89
BbvI	GCAGC	7 cut(s)	112, 283, 380, 529, 598, 647, 650
BccI	CCATC	1 cut(s)	681
BceAI	ACGGC	1 cut(s)	406
BciT130I	CCWGG	1 cut(s)	684
BcoDI	GTCTC	1 cut(s)	747
BcuI	ACTAGT	1 cut(s)	316
BfaI	CTAG	5 cut(s)	56, 317, 596, 600, 785
BfmI	CTRYAG	1 cut(s)	543
BisI	GCNGC	7 cut(s)	126, 297, 394, 543, 612, 636, 639
BlsI	GCNGC	7 cut(s)	127, 298, 395, 544, 613, 637, 640
Bme1390I	CCNGG	1 cut(s)	684
BmeT110I	CYCGRG	1 cut(s)	810
BmiI	GGNNCC	2 cut(s)	512, 681
BmrFI	CCNGG	1 cut(s)	684
BmsI	GCATC	1 cut(s)	527
BmtI	GCTAGC	1 cut(s)	599
BpmI	CTGGAG	1 cut(s)	753
BpuEI	CTTGAG	1 cut(s)	32
BsaHI	GRCGYC	1 cut(s)	179
BsaI	GGTCTC	1 cut(s)	747
BsaJI	CCNNGG	2 cut(s)	84, 514
Bsc4I	CCNNNNNNNGG	1 cut(s)	254
Bse1I	ACTGG	1 cut(s)	461
Bse3DI	GCAATG	2 cut(s)	12, 361
BseBI	CCWGG	1 cut(s)	684
BseDI	CCNNGG	2 cut(s)	84, 514
BseGI	GGATG	2 cut(s)	692, 745
BseLI	CCNNNNNNNGG	1 cut(s)	254
BseMI	GCAATG	2 cut(s)	12, 361
BseMII	CTCAG	1 cut(s)	285
BseNI	ACTGG	1 cut(s)	461
BseRI	GAGGAG	1 cut(s)	563
BseXI	GCAGC	7 cut(s)	112, 283, 380, 529, 598, 647, 650
BsgI	GTGCAG	1 cut(s)	597
BsiHKCI	CYCGRG	1 cut(s)	810
BslI	CCNNNNNNNGG	1 cut(s)	254
BsmAI	GTCTC	1 cut(s)	747
Bso31I	GGTCTC	1 cut(s)	747
BsoBI	CYCGRG	1 cut(s)	810
Bsp143I	GATC	3 cut(s)	322, 403, 659
Bsp19I	CCATGG	1 cut(s)	514
BspACI	CCGC	1 cut(s)	531
BspCNI	CTCAG	1 cut(s)	284
BspLI	GGNNCC	2 cut(s)	512, 681
BspMAI	CTGCAG	1 cut(s)	547
BspOI	GCTAGC	1 cut(s)	599
BspTNI	GGTCTC	1 cut(s)	747
BsrDI	GCAATG	2 cut(s)	12, 361
BsrI	ACTGG	1 cut(s)	461
BssECI	CCNNGG	2 cut(s)	84, 514
BssMI	GATC	3 cut(s)	322, 403, 659
BssNAI	GTATAC	1 cut(s)	116
BssNI	GRCGYC	1 cut(s)	179
BssT1I	CCWWGG	2 cut(s)	84, 514
Bst1107I	GTATAC	1 cut(s)	116
Bst2UI	CCWGG	1 cut(s)	684
Bst4CI	ACNGT	4 cut(s)	49, 253, 426, 820
BstACI	GRCGYC	1 cut(s)	179
BstC8I	GCNNGC	3 cut(s)	23, 33, 597
BstDEI	CTNAG	1 cut(s)	271
BstDSI	CCRYGG	1 cut(s)	514
BstF5I	GGATG	2 cut(s)	692, 745
BstHHI	GCGC	1 cut(s)	542
BstKTI	GATC	3 cut(s)	325, 406, 662
BstMAI	GTCTC	1 cut(s)	747
BstMBI	GATC	3 cut(s)	322, 403, 659
BstMWI	GCNNNNNNNGC	2 cut(s)	22, 537
BstNI	CCWGG	1 cut(s)	684
BstNSI	RCATGY	2 cut(s)	35, 507
BstSCI	CCNGG	1 cut(s)	682
BstSFI	CTRYAG	1 cut(s)	543
BstV1I	GCAGC	7 cut(s)	112, 283, 380, 529, 598, 647, 650
BstZ17I	GTATAC	1 cut(s)	116
BtgI	CCRYGG	1 cut(s)	514
BtsCI	GGATG	2 cut(s)	692, 745
BtsI	GCAGTG	1 cut(s)	585
BtsIMutI	CAGTG	1 cut(s)	585
Cac8I	GCNNGC	3 cut(s)	23, 33, 597
CfoI	GCGC	1 cut(s)	542
Csp6I	GTAC	3 cut(s)	74, 97, 211
CviAII	CATG	8 cut(s)	32, 174, 206, 308, 397, 470, 504, 515
CviJI	RGCY	9 cut(s)	68, 125, 224, 244, 306, 393, 419, 511, 599
CviKI_1	RGCY	9 cut(s)	68, 125, 224, 244, 306, 393, 419, 511, 599
CviQI	GTAC	3 cut(s)	74, 97, 211
DdeI	CTNAG	1 cut(s)	271
DpnI	GATC	3 cut(s)	324, 405, 661
DpnII	GATC	3 cut(s)	322, 403, 659
DraIII	CACNNNGTG	1 cut(s)	755
Eco130I	CCWWGG	2 cut(s)	84, 514
Eco31I	GGTCTC	1 cut(s)	747
Eco57I	CTGAAG	1 cut(s)	84
Eco88I	CYCGRG	1 cut(s)	810
EcoRII	CCWGG	1 cut(s)	682
EcoT14I	CCWWGG	2 cut(s)	84, 514
ErhI	CCWWGG	2 cut(s)	84, 514
FaeI	CATG	8 cut(s)	35, 177, 209, 311, 400, 473, 507, 518
FatI	CATG	8 cut(s)	31, 173, 205, 307, 396, 469, 503, 514
FblI	GTMKAC	2 cut(s)	115, 488
Fnu4HI	GCNGC	7 cut(s)	126, 297, 394, 543, 612, 636, 639
FokI	GGATG	2 cut(s)	699, 732
Fsp4HI	GCNGC	7 cut(s)	126, 297, 394, 543, 612, 636, 639
FspBI	CTAG	5 cut(s)	56, 317, 596, 600, 785
GlaI	GCGC	1 cut(s)	541
GluI	GCNGC	7 cut(s)	126, 297, 394, 543, 612, 636, 639
GsuI	CTGGAG	1 cut(s)	753
HhaI	GCGC	1 cut(s)	542
Hin1I	GRCGYC	1 cut(s)	179
Hin1II	CATG	8 cut(s)	35, 177, 209, 311, 400, 473, 507, 518
Hin6I	GCGC	1 cut(s)	540
HinP1I	GCGC	1 cut(s)	540
HincII	GTYRAC	1 cut(s)	526
HindII	GTYRAC	1 cut(s)	526
HindIII	AAGCTT	1 cut(s)	242
HinfI	GANTC	5 cut(s)	59, 269, 553, 583, 788
HphI	GGTGA	2 cut(s)	530, 767
Hpy166II	GTNNAC	3 cut(s)	116, 489, 526
Hpy188I	TCNGA	3 cut(s)	64, 261, 452
Hpy188III	TCNNGA	3 cut(s)	56, 706, 812
Hpy8I	GTNNAC	3 cut(s)	116, 489, 526
HpyAV	CCTTC	2 cut(s)	289, 384
HpyCH4III	ACNGT	4 cut(s)	49, 253, 426, 820
HpyCH4IV	ACGT	1 cut(s)	179
HpyCH4V	TGCA	5 cut(s)	31, 128, 396, 545, 578
HpyF10VI	GCNNNNNNNGC	2 cut(s)	22, 537
HpyF3I	CTNAG	1 cut(s)	271
HpySE526I	ACGT	1 cut(s)	179
Hsp92I	GRCGYC	1 cut(s)	179
Hsp92II	CATG	8 cut(s)	35, 177, 209, 311, 400, 473, 507, 518
HspAI	GCGC	1 cut(s)	540
Kzo9I	GATC	3 cut(s)	322, 403, 659
LmnI	GCTCC	1 cut(s)	516
Lsp1109I	GCAGC	7 cut(s)	112, 283, 380, 529, 598, 647, 650
LweI	GCATC	1 cut(s)	527
MaeI	CTAG	5 cut(s)	56, 317, 596, 600, 785
MaeII	ACGT	1 cut(s)	179
MaeIII	GTNAC	3 cut(s)	142, 274, 580
MalI	GATC	3 cut(s)	324, 405, 661
MboI	GATC	3 cut(s)	322, 403, 659
MboII	GAAGA	2 cut(s)	546, 815
MfeI	CAATTG	1 cut(s)	26
MluCI	AATT	6 cut(s)	26, 343, 560, 571, 672, 779
MlyI	GAGTC	2 cut(s)	263, 577
MnlI	CCTC	5 cut(s)	115, 427, 541, 621, 694
MroXI	GAANNNNTTC	1 cut(s)	819
MseI	TTAA	6 cut(s)	189, 363, 428, 558, 563, 675
MslI	CAYNNNNRTG	4 cut(s)	36, 230, 474, 519
MspR9I	CCNGG	1 cut(s)	684
MunI	CAATTG	1 cut(s)	26
MvaI	CCWGG	1 cut(s)	684
MwoI	GCNNNNNNNGC	2 cut(s)	22, 537
NcoI	CCATGG	1 cut(s)	514
NdeII	GATC	3 cut(s)	322, 403, 659
NheI	GCTAGC	1 cut(s)	595
NlaIII	CATG	8 cut(s)	35, 177, 209, 311, 400, 473, 507, 518
NlaIV	GGNNCC	2 cut(s)	512, 681
NmuCI	GTSAC	2 cut(s)	142, 580
NspI	RCATGY	2 cut(s)	35, 507
PaeI	GCATGC	1 cut(s)	35
PdmI	GAANNNNTTC	1 cut(s)	819
PfeI	GAWTC	3 cut(s)	59, 553, 788
PkrI	GCNGC	7 cut(s)	127, 298, 395, 544, 613, 637, 640
PleI	GAGTC	2 cut(s)	263, 577
PpsI	GAGTC	2 cut(s)	263, 577
PshBI	ATTAAT	1 cut(s)	189
Psp6I	CCWGG	1 cut(s)	682
PspGI	CCWGG	1 cut(s)	682
PspN4I	GGNNCC	2 cut(s)	512, 681
PstI	CTGCAG	1 cut(s)	547
RsaI	GTAC	3 cut(s)	75, 98, 212
RsaNI	GTAC	3 cut(s)	74, 97, 211
RseI	CAYNNNNRTG	4 cut(s)	36, 230, 474, 519
SaqAI	TTAA	6 cut(s)	189, 363, 428, 558, 563, 675
SatI	GCNGC	7 cut(s)	126, 297, 394, 543, 612, 636, 639
Sau3AI	GATC	3 cut(s)	322, 403, 659
SchI	GAGTC	2 cut(s)	263, 577
ScrFI	CCNGG	1 cut(s)	684
SfaNI	GCATC	1 cut(s)	527
SfcI	CTRYAG	1 cut(s)	543
SmiMI	CAYNNNNRTG	4 cut(s)	36, 230, 474, 519
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
SpeI	ACTAGT	1 cut(s)	316
SphI	GCATGC	1 cut(s)	35
Sse9I	AATT	6 cut(s)	26, 343, 560, 571, 672, 779
SsiI	CCGC	1 cut(s)	531
SspMI	CTAG	5 cut(s)	56, 317, 596, 600, 785
StyD4I	CCNGG	1 cut(s)	682
StyI	CCWWGG	2 cut(s)	84, 514
TaaI	ACNGT	4 cut(s)	49, 253, 426, 820
TaiI	ACGT	1 cut(s)	182
TaqI	TCGA	1 cut(s)	101
TasI	AATT	6 cut(s)	26, 343, 560, 571, 672, 779
TatI	WGTACW	1 cut(s)	96
TfiI	GAWTC	3 cut(s)	59, 553, 788
Tru1I	TTAA	6 cut(s)	189, 363, 428, 558, 563, 675
Tru9I	TTAA	6 cut(s)	189, 363, 428, 558, 563, 675
TscAI	CASTG	1 cut(s)	585
TseFI	GTSAC	2 cut(s)	142, 580
TseI	GCWGC	7 cut(s)	125, 296, 393, 542, 611, 635, 638
Tsp45I	GTSAC	2 cut(s)	142, 580
TspDTI	ATGAA	3 cut(s)	162, 271, 815
TspRI	CASTG	1 cut(s)	585
VspI	ATTAAT	1 cut(s)	189
XbaI	TCTAGA	1 cut(s)	55
XceI	RCATGY	2 cut(s)	35, 507
XmiI	GTMKAC	2 cut(s)	115, 488
XmnI	GAANNNNTTC	1 cut(s)	819
XspI	CTAG	5 cut(s)	56, 317, 596, 600, 785
ZraI	GACGTC	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.