Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0011724

Physical Location & Seq

Genomic Coordinates Reverse (-)

74666368 .. 74668143

Gene Structure 1776 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00136990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGCTCTGCAAGAACAAGATTCCCAAGAGCTCCAAAACCCACCAATGCTTTTAGACGCTTTGTTCTGTGAAGAAGGTCTTGAGGGAGAAGAAGAAGAAGATTTGGGAGACAATGGTGTTGAAGAACAGAGCGAGAGCTGTGCTGAGAATTTGGAAAAACAGTCTGTTTCCCCTTTGGTTATGTCAAAAGGCGACCTGTTTTGGGAAGAAGATGAACTAGTCTCTCTAATTTCAAAAGAGAAACAAACCCATGTCTGTTTCAGTGGTTCAATCTCAGATGGGTCTTTAATGGTGGCTCGGAGAGAAGCATTAGTCTGGATTTTGAGTGTGAAATCACACTATGGGTTCTCTTGTTTGACCACTGTTCTAGCTATGAACTACTTTGATCGGTTCAGTTCAAGCTCGGTGTTTCAAAAGGACAAGCCTTGGATGAGTCAACTAGCTGCTGTGGCTTGTCTCTCTCTGGCTGCCAAAGTGGAAGAGACCCACGTGCCCCTTCTTCTGGATTTGCAAGTGGAGGAATCAAAGTATGTATTTGAAGCCAGGACTATTCAAAGAATGGAGCTTTTGGTGCTTTCAACTCTTGACTGGAGGATGAATCCGGTAACCCCAAATTCATTCTTTGATCACTTGATCAGGAGGCTTGGTTTGAAGATCCATTTGCATTCGGAGTTTCTGTGGAGATGTGAGCGCCTCCTTCTCTCTGTCATTGCAGATTCCAGATTTCTTGTCTTTCTGCCTTCTATAGTAGCTGCTGCAATAATGTTGTATGTTATTAATGAAATTGAAACATGCAATCCTGTCGATTATCAGAATCAGGTTTTGAGTGTACTCAAAGTCAGCCAGGGCATCGTCAGTGAATGCTACAAGCTCATCCTGGTACTATCAGCCAGCACTGTGCAAAACCAAGTGCATAAACGCAAGCATTCATTCATACCTAGCAGCCCAAGTGGAGTTATAGATGTTTGTTTCAGCTCTGATACCTCAAATGATTCATGGGCTGTGGCTTCACCGCTCTCATCTTTGCCAGATCCTCGATTTAAAAGGAGCAGACTTCAGGACCAGCAGATGCGGCTTCCCTCGTTAAATCGTGTATCTGTTGATGTGCTTAGCAGCTCTCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009987 GO:0010154 GO:0010374 GO:0010440 GO:0010444 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0090558 GO:0090627

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

374

Amino Acids

42.14

Weight (kDa)

4.94

Isoelectric Point (pI)

61.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	98 - 200	7.7e-25	Cyclin, N-terminal domain
Cyclin_C	PF02984	202 - 310	1.2e-16	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011724)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50070
fragaria_vesca	FvH4_1g16680
malus_domestica	MD02G1178200.v1.1 MD15G1288100.v1.1
prunus_persica	Prupe.6G229700_v2.0.a1 Prupe.6G229700_v2.0.a1 Prupe.6G229700_v2.0.a1
pyrus_communis	pycom02g14430 pycom15g25160
rosa_chinensis	RchiOBHm_Chr2g0106601
rosa_laevigata	RLG00000017519
rosa_multiflora	Rmu_sc0006221.1_g000010
rosa_roxburghii	Rroxscaffold_2G00136990
rosa_rugosa	Rorug02G0136600
rosa_samantha	Rh2AG187800 Rh2BG198800 Rh2CG192900 Rh2DG194000
rosa_wichuraiana	Rw2G014740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1015
AciI	CCGC	2 cut(s)	1013, 1072
AclWI	GGATC	2 cut(s)	649, 1025
AcsI	RAATTY	2 cut(s)	148, 613
AcuI	CTGAAG	1 cut(s)	1040
AcvI	CACGTG	1 cut(s)	490
AfaI	GTAC	2 cut(s)	831, 882
AfiI	CCNNNNNNNGG	2 cut(s)	202, 502
AhlI	ACTAGT	1 cut(s)	217
AjnI	CCWGG	3 cut(s)	542, 843, 876
Alw21I	GWGCWC	1 cut(s)	33
Alw26I	GTCTC	4 cut(s)	102, 226, 461, 476
AlwI	GGATC	2 cut(s)	649, 1025
ApeKI	GCWGC	6 cut(s)	443, 467, 752, 755, 942, 1113
ApoI	RAATTY	2 cut(s)	148, 613
AseI	ATTAAT	1 cut(s)	777
AspLEI	GCGC	1 cut(s)	693
AspS9I	GGNCC	1 cut(s)	1060
AsuHPI	GGTGA	1 cut(s)	1002
AvaII	GGWCC	1 cut(s)	1060
BaeGI	GKGCMC	1 cut(s)	495
BanII	GRGCYC	1 cut(s)	33
BbrPI	CACGTG	1 cut(s)	490
Bbv12I	GWGCWC	1 cut(s)	33
BbvI	GCAGC	5 cut(s)	430, 454, 739, 742, 954
BccI	CCATC	1 cut(s)	272
BcgI	CGANNNNNNTGC	4 cut(s)	122, 156, 784, 818
BciT130I	CCWGG	3 cut(s)	544, 845, 878
BclI	TGATCA	2 cut(s)	625, 633
BcoDI	GTCTC	4 cut(s)	102, 226, 461, 476
BcuI	ACTAGT	1 cut(s)	217
BfaI	CTAG	4 cut(s)	218, 368, 440, 939
BfmI	CTRYAG	1 cut(s)	744
BfoI	RGCGCY	1 cut(s)	694
BisI	GCNGC	7 cut(s)	444, 468, 753, 756, 943, 1073, 1114
BlpI	GCTNAGC	1 cut(s)	1109
BlsI	GCNGC	7 cut(s)	445, 469, 754, 757, 944, 1074, 1115
Bme1390I	CCNGG	3 cut(s)	544, 845, 878
Bme18I	GGWCC	1 cut(s)	1060
BmgT120I	GGNCC	1 cut(s)	1060
BmrFI	CCNGG	3 cut(s)	544, 845, 878
BmsI	GCATC	2 cut(s)	858, 1059
BpmI	CTGGAG	1 cut(s)	610
Bpu1102I	GCTNAGC	1 cut(s)	1109
BpuEI	CTTGAG	1 cut(s)	101
BsaAI	YACGTR	1 cut(s)	490
BsaI	GGTCTC	1 cut(s)	476
BsaJI	CCNNGG	2 cut(s)	425, 844
BsaWI	WCCGGW	1 cut(s)	601
BsaXI	ACNNNNNCTCC	4 cut(s)	631, 661, 662, 692
Bsc4I	CCNNNNNNNGG	2 cut(s)	202, 502
Bse1I	ACTGG	1 cut(s)	593
Bse3DI	GCAATG	1 cut(s)	708
BseBI	CCWGG	3 cut(s)	544, 845, 878
BseDI	CCNNGG	2 cut(s)	425, 844
BseGI	GGATG	3 cut(s)	435, 600, 873
BseLI	CCNNNNNNNGG	2 cut(s)	202, 502
BseMI	GCAATG	1 cut(s)	708
BseMII	CTCAG	2 cut(s)	135, 288
BseNI	ACTGG	1 cut(s)	593
BseSI	GKGCMC	1 cut(s)	495
BseXI	GCAGC	5 cut(s)	430, 454, 739, 742, 954
BsiHKAI	GWGCWC	1 cut(s)	33
BsiSI	CCGG	1 cut(s)	602
BslI	CCNNNNNNNGG	2 cut(s)	202, 502
BsmAI	GTCTC	4 cut(s)	102, 226, 461, 476
BsmI	GAATGC	3 cut(s)	664, 866, 925
Bso31I	GGTCTC	1 cut(s)	476
Bsp1286I	GDGCHC	2 cut(s)	33, 495
Bsp143I	GATC	5 cut(s)	385, 625, 633, 654, 1030
Bsp1720I	GCTNAGC	1 cut(s)	1109
BspACI	CCGC	2 cut(s)	1013, 1072
BspCNI	CTCAG	2 cut(s)	136, 287
BspPI	GGATC	2 cut(s)	649, 1025
BspTNI	GGTCTC	1 cut(s)	476
BsrBI	CCGCTC	1 cut(s)	1015
BsrDI	GCAATG	1 cut(s)	708
BsrI	ACTGG	1 cut(s)	593
BssECI	CCNNGG	2 cut(s)	425, 844
BssMI	GATC	5 cut(s)	385, 625, 633, 654, 1030
BssT1I	CCWWGG	1 cut(s)	425
Bst2UI	CCWGG	3 cut(s)	544, 845, 878
Bst4CI	ACNGT	3 cut(s)	162, 364, 898
Bst6I	CTCTTC	1 cut(s)	474
BstBAI	YACGTR	1 cut(s)	490
BstC8I	GCNNGC	2 cut(s)	892, 923
BstDEI	CTNAG	3 cut(s)	144, 274, 1109
BstEII	GGTNACC	1 cut(s)	604
BstF5I	GGATG	3 cut(s)	435, 600, 873
BstH2I	RGCGCY	1 cut(s)	694
BstHHI	GCGC	1 cut(s)	693
BstKTI	GATC	5 cut(s)	388, 628, 636, 657, 1033
BstMAI	GTCTC	4 cut(s)	102, 226, 461, 476
BstMBI	GATC	5 cut(s)	385, 625, 633, 654, 1030
BstMWI	GCNNNNNNNGC	3 cut(s)	449, 571, 1072
BstNI	CCWGG	3 cut(s)	544, 845, 878
BstNSI	RCATGY	1 cut(s)	795
BstPI	GGTNACC	1 cut(s)	604
BstSCI	CCNGG	3 cut(s)	542, 843, 876
BstSFI	CTRYAG	1 cut(s)	744
BstSLI	GKGCMC	1 cut(s)	495
BstV1I	GCAGC	5 cut(s)	430, 454, 739, 742, 954
BstX2I	RGATCY	2 cut(s)	654, 1030
BstYI	RGATCY	2 cut(s)	654, 1030
BtsCI	GGATG	3 cut(s)	435, 600, 873
BtsIMutI	CAGTG	4 cut(s)	268, 360, 862, 894
Cac8I	GCNNGC	2 cut(s)	892, 923
CfoI	GCGC	1 cut(s)	693
Cfr13I	GGNCC	1 cut(s)	1060
CseI	GACGC	1 cut(s)	65
Csp6I	GTAC	2 cut(s)	830, 881
CviAII	CATG	3 cut(s)	251, 792, 996
CviQI	GTAC	2 cut(s)	830, 881
DdeI	CTNAG	3 cut(s)	144, 274, 1109
DpnI	GATC	5 cut(s)	387, 627, 635, 656, 1032
DpnII	GATC	5 cut(s)	385, 625, 633, 654, 1030
DraI	TTTAAA	1 cut(s)	1042
Eam1104I	CTCTTC	1 cut(s)	474
EarI	CTCTTC	1 cut(s)	474
Ecl136II	GAGCTC	1 cut(s)	31
Eco130I	CCWWGG	1 cut(s)	425
Eco24I	GRGCYC	1 cut(s)	33
Eco31I	GGTCTC	1 cut(s)	476
Eco47I	GGWCC	1 cut(s)	1060
Eco53kI	GAGCTC	1 cut(s)	31
Eco57I	CTGAAG	1 cut(s)	1040
Eco72I	CACGTG	1 cut(s)	490
Eco91I	GGTNACC	1 cut(s)	604
EcoICRI	GAGCTC	1 cut(s)	31
EcoO65I	GGTNACC	1 cut(s)	604
EcoRII	CCWGG	3 cut(s)	542, 843, 876
EcoT14I	CCWWGG	1 cut(s)	425
EcoT38I	GRGCYC	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	425
FaeI	CATG	3 cut(s)	254, 795, 999
FalI	AAGNNNNNCTT	2 cut(s)	63, 95
FatI	CATG	3 cut(s)	250, 791, 995
FbaI	TGATCA	2 cut(s)	625, 633
Fnu4HI	GCNGC	7 cut(s)	444, 468, 753, 756, 943, 1073, 1114
FokI	GGATG	3 cut(s)	442, 607, 860
FriOI	GRGCYC	1 cut(s)	33
Fsp4HI	GCNGC	7 cut(s)	444, 468, 753, 756, 943, 1073, 1114
FspBI	CTAG	4 cut(s)	218, 368, 440, 939
GlaI	GCGC	1 cut(s)	692
GluI	GCNGC	7 cut(s)	444, 468, 753, 756, 943, 1073, 1114
GsuI	CTGGAG	1 cut(s)	610
HaeII	RGCGCY	1 cut(s)	694
HapII	CCGG	1 cut(s)	602
HgaI	GACGC	1 cut(s)	65
HhaI	GCGC	1 cut(s)	693
Hin1II	CATG	3 cut(s)	254, 795, 999
Hin6I	GCGC	1 cut(s)	691
HinP1I	GCGC	1 cut(s)	691
HincII	GTYRAC	1 cut(s)	437
HindII	GTYRAC	1 cut(s)	437
HinfI	GANTC	7 cut(s)	20, 433, 521, 598, 716, 814, 992
HpaII	CCGG	1 cut(s)	602
HphI	GGTGA	1 cut(s)	1002
Hpy166II	GTNNAC	2 cut(s)	437, 830
Hpy188I	TCNGA	5 cut(s)	277, 300, 670, 813, 979
Hpy188III	TCNNGA	7 cut(s)	80, 316, 503, 584, 637, 720, 1058
Hpy8I	GTNNAC	2 cut(s)	437, 830
HpyAV	CCTTC	4 cut(s)	68, 506, 707, 750
HpyCH4III	ACNGT	3 cut(s)	162, 364, 898
HpyCH4IV	ACGT	1 cut(s)	489
HpyCH4V	TGCA	8 cut(s)	10, 511, 664, 713, 758, 795, 901, 913
HpyF10VI	GCNNNNNNNGC	3 cut(s)	449, 571, 1072
HpyF3I	CTNAG	3 cut(s)	144, 274, 1109
HpySE526I	ACGT	1 cut(s)	489
Hsp92II	CATG	3 cut(s)	254, 795, 999
HspAI	GCGC	1 cut(s)	691
Ksp22I	TGATCA	2 cut(s)	625, 633
Kzo9I	GATC	5 cut(s)	385, 625, 633, 654, 1030
LmnI	GCTCC	3 cut(s)	36, 562, 1047
Lsp1109I	GCAGC	5 cut(s)	430, 454, 739, 742, 954
LweI	GCATC	2 cut(s)	858, 1059
MaeI	CTAG	4 cut(s)	218, 368, 440, 939
MaeII	ACGT	1 cut(s)	489
MaeIII	GTNAC	1 cut(s)	604
MalI	GATC	5 cut(s)	387, 627, 635, 656, 1032
MbiI	CCGCTC	1 cut(s)	1015
MboI	GATC	5 cut(s)	385, 625, 633, 654, 1030
MflI	RGATCY	2 cut(s)	654, 1030
MhlI	GDGCHC	2 cut(s)	33, 495
MluCI	AATT	4 cut(s)	148, 228, 613, 783
MlyI	GAGTC	1 cut(s)	442
MnlI	CCTC	8 cut(s)	76, 511, 585, 633, 704, 994, 1044, 1090
MseI	TTAA	4 cut(s)	287, 777, 1041, 1085
MspI	CCGG	1 cut(s)	602
MspR9I	CCNGG	3 cut(s)	544, 845, 878
Mva1269I	GAATGC	3 cut(s)	664, 866, 925
MvaI	CCWGG	3 cut(s)	544, 845, 878
MwoI	GCNNNNNNNGC	3 cut(s)	449, 571, 1072
NdeII	GATC	5 cut(s)	385, 625, 633, 654, 1030
NlaIII	CATG	3 cut(s)	254, 795, 999
NspI	RCATGY	1 cut(s)	795
PctI	GAATGC	3 cut(s)	664, 866, 925
PfeI	GAWTC	6 cut(s)	20, 521, 598, 716, 814, 992
PkrI	GCNGC	7 cut(s)	445, 469, 754, 757, 944, 1074, 1115
PleI	GAGTC	1 cut(s)	441
PmaCI	CACGTG	1 cut(s)	490
PmlI	CACGTG	1 cut(s)	490
PpsI	GAGTC	1 cut(s)	441
Ppu21I	YACGTR	1 cut(s)	490
PshBI	ATTAAT	1 cut(s)	777
Psp124BI	GAGCTC	1 cut(s)	33
Psp6I	CCWGG	3 cut(s)	542, 843, 876
PspCI	CACGTG	1 cut(s)	490
PspEI	GGTNACC	1 cut(s)	604
PspGI	CCWGG	3 cut(s)	542, 843, 876
PspPI	GGNCC	1 cut(s)	1060
PsuI	RGATCY	2 cut(s)	654, 1030
RsaI	GTAC	2 cut(s)	831, 882
RsaNI	GTAC	2 cut(s)	830, 881
SacI	GAGCTC	1 cut(s)	33
SaqAI	TTAA	4 cut(s)	287, 777, 1041, 1085
SatI	GCNGC	7 cut(s)	444, 468, 753, 756, 943, 1073, 1114
Sau3AI	GATC	5 cut(s)	385, 625, 633, 654, 1030
Sau96I	GGNCC	1 cut(s)	1060
SchI	GAGTC	1 cut(s)	442
ScrFI	CCNGG	3 cut(s)	544, 845, 878
SduI	GDGCHC	2 cut(s)	33, 495
SfaNI	GCATC	2 cut(s)	858, 1059
SfcI	CTRYAG	1 cut(s)	744
SinI	GGWCC	1 cut(s)	1060
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
SpeI	ACTAGT	1 cut(s)	217
Sse9I	AATT	4 cut(s)	148, 228, 613, 783
SsiI	CCGC	2 cut(s)	1013, 1072
SspMI	CTAG	4 cut(s)	218, 368, 440, 939
SstI	GAGCTC	1 cut(s)	33
StyD4I	CCNGG	3 cut(s)	542, 843, 876
StyI	CCWWGG	1 cut(s)	425
TaaI	ACNGT	3 cut(s)	162, 364, 898
TaiI	ACGT	1 cut(s)	492
TaqI	TCGA	2 cut(s)	804, 1036
TasI	AATT	4 cut(s)	148, 228, 613, 783
TatI	WGTACW	1 cut(s)	829
TauI	GCSGC	1 cut(s)	1075
TfiI	GAWTC	6 cut(s)	20, 521, 598, 716, 814, 992
Tru1I	TTAA	4 cut(s)	287, 777, 1041, 1085
Tru9I	TTAA	4 cut(s)	287, 777, 1041, 1085
TscAI	CASTG	4 cut(s)	268, 367, 862, 901
TseI	GCWGC	6 cut(s)	443, 467, 752, 755, 942, 1113
TspDTI	ATGAA	8 cut(s)	228, 389, 606, 611, 795, 918, 922, 984
TspRI	CASTG	4 cut(s)	268, 367, 862, 901
VpaK11BI	GGWCC	1 cut(s)	1060
VspI	ATTAAT	1 cut(s)	777
XapI	RAATTY	2 cut(s)	148, 613
XceI	RCATGY	1 cut(s)	795
XspI	CTAG	4 cut(s)	218, 368, 440, 939

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.