Rh2CG192900

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0011724
Physical Location & Seq
Forward (+)
18233225 .. 18235283
2059 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG192900.1

Sequence Viewer

Length: 789 bp
ATGGCTCTGCAAGAACAAGATTCCCAAGAGCTCCAAAACCCACCAATGCTTTTAGACGCTTTGTTCTGTGAAGAAGGTCTTGAGGGAGAAGAAGAAGATTTGGGAGACAATGGTGTTGAAGAACAGAGCGAGAGCTGTGTTGAGACTTTGGAAAAACAGTCTTCCCCTTTGGTTATGTCAAAAGGCGACCTGTTTTGGGAAGAAGATGAACTTGTCTCTCTAATTTCAAAAGAGAAACAAACCCATGTCAGTTTCAGTGGTTCAAACTCAGATGGGTCTTTAATGGTGGCTCGGAGAGAAGCATTAGTCTGGATTTTGAGTGTGAAATCACACTATGGGTTGTCTTGTTTGACCACTGTTCTAGCTATGAACTACTTTGATCGGTTCAGTTCAAGCTCGGTGTTTCAAAAGGACAAGCCTTGGATGAGTCAACTAACTGCTGTGGCTTGTCTCTCTCTGGCTGCCAAAGTGGAAGAGACCCATGTGCCCCTTCTTCTGGATTTGCAAGTGGAGGAATCAAAGTATGTATTTGAAGCCAGGACTATTCAAAGAATGGAGCTTTTGGTGCTTTCAACTCTTGACTGGAGGATGAATCCGGTAACCCCAAATTCATTCTTTGATCACATGATCAGGAGGCTTGGTTTGAAGATCCATTTGCATTCGGAGTTTCTGTGGAGATGTGAGCGCCTCCTTCTCTCTGTCATTGCAGGTGAGCAATCAGATAGCTCTTCAAGTGTATTAGTATCAATCCTACACCATAAAAAAAGAAATGTACTCATAATGATATGA

Protein Analysis

262

Amino Acids

29.74

Weight (kDa)

4.85

Isoelectric Point (pI)

67.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 94 - 198 5.8e-26 Cyclin, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011724)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50070
fragaria_vesca FvH4_1g16680
malus_domestica MD02G1178200.v1.1 MD15G1288100.v1.1
prunus_persica Prupe.6G229700_v2.0.a1 Prupe.6G229700_v2.0.a1 Prupe.6G229700_v2.0.a1
pyrus_communis pycom02g14430 pycom15g25160
rosa_chinensis RchiOBHm_Chr2g0106601
rosa_laevigata RLG00000017519
rosa_multiflora Rmu_sc0006221.1_g000010
rosa_roxburghii Rroxscaffold_2G00136990
rosa_rugosa Rorug02G0136600
rosa_samantha Rh2AG187800 Rh2BG198800 Rh2CG192900 Rh2DG194000
rosa_wichuraiana Rw2G014740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 698
Acc36I ACCTGC 1 cut(s) 698
AclWI GGATC 1 cut(s) 643
AcsI RAATTY 1 cut(s) 607
AfaI GTAC 1 cut(s) 774
AfiI CCNNNNNNNGG 2 cut(s) 196, 496
AjnI CCWGG 1 cut(s) 536
AluBI AGCT 6 cut(s) 31, 135, 365, 396, 559, 726
AluI AGCT 6 cut(s) 31, 135, 365, 396, 559, 726
Alw21I GWGCWC 1 cut(s) 33
Alw26I GTCTC 5 cut(s) 99, 137, 220, 455, 470
AlwI GGATC 1 cut(s) 643
ApeKI GCWGC 1 cut(s) 461
ApoI RAATTY 1 cut(s) 607
AspLEI GCGC 1 cut(s) 687
AsuHPI GGTGA 1 cut(s) 722
BaeGI GKGCMC 1 cut(s) 489
BanII GRGCYC 1 cut(s) 33
BbsI GAAGAC 1 cut(s) 153
Bbv12I GWGCWC 1 cut(s) 33
BbvI GCAGC 1 cut(s) 448
BccI CCATC 1 cut(s) 266
BciT130I CCWGG 1 cut(s) 538
BclI TGATCA 2 cut(s) 619, 627
BcoDI GTCTC 5 cut(s) 99, 137, 220, 455, 470
BfaI CTAG 1 cut(s) 362
BfoI RGCGCY 1 cut(s) 688
BfuAI ACCTGC 1 cut(s) 698
BisI GCNGC 1 cut(s) 462
BlsI GCNGC 1 cut(s) 463
Bme1390I CCNGG 1 cut(s) 538
BmrFI CCNGG 1 cut(s) 538
BpiI GAAGAC 1 cut(s) 153
BpmI CTGGAG 1 cut(s) 604
BpuEI CTTGAG 1 cut(s) 101
BsaI GGTCTC 1 cut(s) 470
BsaJI CCNNGG 1 cut(s) 419
BsaWI WCCGGW 1 cut(s) 595
BsaXI ACNNNNNCTCC 4 cut(s) 625, 655, 656, 686
Bsc4I CCNNNNNNNGG 2 cut(s) 196, 496
Bse1I ACTGG 1 cut(s) 587
Bse3DI GCAATG 1 cut(s) 702
BseBI CCWGG 1 cut(s) 538
BseDI CCNNGG 1 cut(s) 419
BseGI GGATG 2 cut(s) 429, 594
BseLI CCNNNNNNNGG 2 cut(s) 196, 496
BseMI GCAATG 1 cut(s) 702
BseMII CTCAG 1 cut(s) 282
BseNI ACTGG 1 cut(s) 587
BseSI GKGCMC 1 cut(s) 489
BseXI GCAGC 1 cut(s) 448
BsiHKAI GWGCWC 1 cut(s) 33
BsiSI CCGG 1 cut(s) 596
BslI CCNNNNNNNGG 2 cut(s) 196, 496
BsmAI GTCTC 5 cut(s) 99, 137, 220, 455, 470
BsmI GAATGC 1 cut(s) 658
Bso31I GGTCTC 1 cut(s) 470
Bsp1286I GDGCHC 2 cut(s) 33, 489
Bsp143I GATC 4 cut(s) 379, 619, 627, 648
BspCNI CTCAG 1 cut(s) 281
BspMI ACCTGC 1 cut(s) 698
BspPI GGATC 1 cut(s) 643
BspQI GCTCTTC 1 cut(s) 733
BspTNI GGTCTC 1 cut(s) 470
BsrDI GCAATG 1 cut(s) 702
BsrI ACTGG 1 cut(s) 587
BssECI CCNNGG 1 cut(s) 419
BssMI GATC 4 cut(s) 379, 619, 627, 648
BssT1I CCWWGG 1 cut(s) 419
Bst2UI CCWGG 1 cut(s) 538
Bst4CI ACNGT 2 cut(s) 159, 358
Bst6I CTCTTC 2 cut(s) 468, 733
BstDEI CTNAG 1 cut(s) 268
BstEII GGTNACC 1 cut(s) 598
BstF5I GGATG 2 cut(s) 429, 594
BstH2I RGCGCY 1 cut(s) 688
BstHHI GCGC 1 cut(s) 687
BstKTI GATC 4 cut(s) 382, 622, 630, 651
BstMAI GTCTC 5 cut(s) 99, 137, 220, 455, 470
BstMBI GATC 4 cut(s) 379, 619, 627, 648
BstMWI GCNNNNNNNGC 1 cut(s) 565
BstNI CCWGG 1 cut(s) 538
BstPI GGTNACC 1 cut(s) 598
BstSCI CCNGG 1 cut(s) 536
BstSLI GKGCMC 1 cut(s) 489
BstV1I GCAGC 1 cut(s) 448
BstV2I GAAGAC 1 cut(s) 153
BstX2I RGATCY 1 cut(s) 648
BstYI RGATCY 1 cut(s) 648
BtsCI GGATG 2 cut(s) 429, 594
BtsIMutI CAGTG 2 cut(s) 262, 354
BveI ACCTGC 1 cut(s) 698
CfoI GCGC 1 cut(s) 687
CseI GACGC 1 cut(s) 65
Csp6I GTAC 1 cut(s) 773
CviAII CATG 3 cut(s) 245, 482, 625
CviQI GTAC 1 cut(s) 773
DdeI CTNAG 1 cut(s) 268
DpnI GATC 4 cut(s) 381, 621, 629, 650
DpnII GATC 4 cut(s) 379, 619, 627, 648
Eam1104I CTCTTC 2 cut(s) 468, 733
EarI CTCTTC 2 cut(s) 468, 733
Ecl136II GAGCTC 1 cut(s) 31
Eco130I CCWWGG 1 cut(s) 419
Eco24I GRGCYC 1 cut(s) 33
Eco31I GGTCTC 1 cut(s) 470
Eco53kI GAGCTC 1 cut(s) 31
Eco91I GGTNACC 1 cut(s) 598
EcoICRI GAGCTC 1 cut(s) 31
EcoO65I GGTNACC 1 cut(s) 598
EcoRII CCWGG 1 cut(s) 536
EcoT14I CCWWGG 1 cut(s) 419
EcoT38I GRGCYC 1 cut(s) 33
ErhI CCWWGG 1 cut(s) 419
FaeI CATG 3 cut(s) 248, 485, 628
FalI AAGNNNNNCTT 4 cut(s) 63, 95, 195, 227
FatI CATG 3 cut(s) 244, 481, 624
FbaI TGATCA 2 cut(s) 619, 627
Fnu4HI GCNGC 1 cut(s) 462
FokI GGATG 2 cut(s) 436, 601
FriOI GRGCYC 1 cut(s) 33
Fsp4HI GCNGC 1 cut(s) 462
FspBI CTAG 1 cut(s) 362
GlaI GCGC 1 cut(s) 686
GluI GCNGC 1 cut(s) 462
GsuI CTGGAG 1 cut(s) 604
HaeII RGCGCY 1 cut(s) 688
HapII CCGG 1 cut(s) 596
HgaI GACGC 1 cut(s) 65
HhaI GCGC 1 cut(s) 687
Hin1II CATG 3 cut(s) 248, 485, 628
Hin6I GCGC 1 cut(s) 685
HinP1I GCGC 1 cut(s) 685
HincII GTYRAC 1 cut(s) 431
HindII GTYRAC 1 cut(s) 431
HinfI GANTC 4 cut(s) 20, 427, 515, 592
HpaII CCGG 1 cut(s) 596
HphI GGTGA 1 cut(s) 722
Hpy166II GTNNAC 1 cut(s) 431
Hpy188I TCNGA 4 cut(s) 271, 294, 664, 721
Hpy188III TCNNGA 5 cut(s) 80, 310, 497, 578, 631
Hpy8I GTNNAC 1 cut(s) 431
HpyAV CCTTC 3 cut(s) 68, 500, 701
HpyCH4III ACNGT 2 cut(s) 159, 358
HpyCH4V TGCA 4 cut(s) 10, 505, 658, 707
HpyF10VI GCNNNNNNNGC 1 cut(s) 565
HpyF3I CTNAG 1 cut(s) 268
Hsp92II CATG 3 cut(s) 248, 485, 628
HspAI GCGC 1 cut(s) 685
Ksp22I TGATCA 2 cut(s) 619, 627
Kzo9I GATC 4 cut(s) 379, 619, 627, 648
LguI GCTCTTC 1 cut(s) 733
LmnI GCTCC 2 cut(s) 36, 556
Lsp1109I GCAGC 1 cut(s) 448
MaeI CTAG 1 cut(s) 362
MaeIII GTNAC 1 cut(s) 598
MalI GATC 4 cut(s) 381, 621, 629, 650
MboI GATC 4 cut(s) 379, 619, 627, 648
MflI RGATCY 1 cut(s) 648
MhlI GDGCHC 2 cut(s) 33, 489
MluCI AATT 2 cut(s) 222, 607
MlyI GAGTC 1 cut(s) 436
MnlI CCTC 5 cut(s) 76, 505, 579, 627, 698
MseI TTAA 1 cut(s) 281
MspI CCGG 1 cut(s) 596
MspR9I CCNGG 1 cut(s) 538
Mva1269I GAATGC 1 cut(s) 658
MvaI CCWGG 1 cut(s) 538
MwoI GCNNNNNNNGC 1 cut(s) 565
NdeII GATC 4 cut(s) 379, 619, 627, 648
NlaIII CATG 3 cut(s) 248, 485, 628
PaqCI CACCTGC 1 cut(s) 698
PciSI GCTCTTC 1 cut(s) 733
PctI GAATGC 1 cut(s) 658
PfeI GAWTC 3 cut(s) 20, 515, 592
PkrI GCNGC 1 cut(s) 463
PleI GAGTC 1 cut(s) 435
PpsI GAGTC 1 cut(s) 435
Psp124BI GAGCTC 1 cut(s) 33
Psp6I CCWGG 1 cut(s) 536
PspEI GGTNACC 1 cut(s) 598
PspGI CCWGG 1 cut(s) 536
PsuI RGATCY 1 cut(s) 648
RsaI GTAC 1 cut(s) 774
RsaNI GTAC 1 cut(s) 773
SacI GAGCTC 1 cut(s) 33
SapI GCTCTTC 1 cut(s) 733
SaqAI TTAA 1 cut(s) 281
SatI GCNGC 1 cut(s) 462
Sau3AI GATC 4 cut(s) 379, 619, 627, 648
SchI GAGTC 1 cut(s) 436
ScrFI CCNGG 1 cut(s) 538
SduI GDGCHC 2 cut(s) 33, 489
SetI ASST 9 cut(s) 33, 79, 137, 192, 367, 398, 561, 712, 728
SmlI CTYRAG 1 cut(s) 80
SmoI CTYRAG 1 cut(s) 80
Sse9I AATT 2 cut(s) 222, 607
SspMI CTAG 1 cut(s) 362
SstI GAGCTC 1 cut(s) 33
StyD4I CCNGG 1 cut(s) 536
StyI CCWWGG 1 cut(s) 419
TaaI ACNGT 2 cut(s) 159, 358
TasI AATT 2 cut(s) 222, 607
TatI WGTACW 1 cut(s) 772
TfiI GAWTC 3 cut(s) 20, 515, 592
Tru1I TTAA 1 cut(s) 281
Tru9I TTAA 1 cut(s) 281
TscAI CASTG 2 cut(s) 262, 361
TseI GCWGC 1 cut(s) 461
TspDTI ATGAA 4 cut(s) 222, 383, 600, 605
TspRI CASTG 2 cut(s) 262, 361
XapI RAATTY 1 cut(s) 607
XspI CTAG 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.