Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0011724

Physical Location & Seq

Genomic Coordinates Forward (+)

16843363 .. 16845014

Gene Structure 1652 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G014740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGCTCTGCAAGAACAAGATTCCCAAGAGCTCCAAAACCCACCAATGCTTTTAGACGCTTTGTTCTGTGAAGAAGGTCTTGAGGGAGAAGAAGAAGAAGAAGAAGATTTGGGAGACAATGGTGTTGAAGAACAGAGCGAGAGCTGTGTTGAGACTTTGGAAAAACAGTCTGTTTCCCCTTTGGTTATGTCAAAAGGCGACCTGTTTTGGGAAGAAGATGAACTTGTCTCTCTAATTTCAAAAGAGAAACAAACCTATGTCTGTTTCAGTGGTTCAAACTCAGATGGGTCTTTAATGGTGGCTCGGAGAGACGCATTAGTCTGGATTTTGAGTGTGAAATCACACTATGGGTTTTCTTGTTTGACCACTGTTCTAGCTATGAACTACTTTGATCGGTTCAGTTCAAGCTCGGTGTTTCAAAAGGACAAGCCTTGGATGAGTCAACTAACTGCTGTGGCTTGTCTCTCTCTGGCTGCCAAAGTGGAAGAGACCCATGTGCCCCTTCTTCTGGATTTGCAAGTGGAGGAATCGAAGTATGTATTTGAAGCCAGGACTATTCAAAGAATGGAGCTTTTGGTGCTTTCAACTCTTGACTGGAGGATGAATCCAGTAACCCCAAATTCATTCTTTGATCACATGATCAGGAGGCTTGGTTTGAAGATCCATTTGCATTCGGAGTTTCTGTGGAGATGTGAGCGCCTCCTTCTCTCTGTCATTGCAGATTCCAGATTTCTGGTCTTTCTGCCTTCTATAGTAGCTGCTGCAGTAATGCTGTATGTTATTAATGAAATTGAAACATTCAATCCTGTCGATTATCAGAATCAGGTTTTGAGTGTACTCAAAGTCAGCCAGGGCATAGTCAGTGAATGCTACAAGCTCATCCTGGTACTATCAGCCAGCACTGTGCAAAACCAAGGGCATAAACGCAAGCATTCATTTATACCTAGCAGCCCAAGTGGAGTTATAGATGTATGTTTCAGCTCTGATACCTCAAATGATTCATGGGCTGTGGCTTCACCGCTCTCATCTTTGCCAGATCCTCGATTTAAAAGGAGCAGACTTCAGGACCAGCAGATGCGGCTACCCTCGTTAAATCGTGTATCTGTTGATGTGCTTAGCAGCTCTCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009987 GO:0010154 GO:0010374 GO:0010440 GO:0010444 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0090558 GO:0090627

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

376

Amino Acids

42.47

Weight (kDa)

4.82

Isoelectric Point (pI)

63.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	100 - 202	3.2e-25	Cyclin, N-terminal domain
Cyclin_C	PF02984	204 - 312	1.2e-16	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011724)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50070
fragaria_vesca	FvH4_1g16680
malus_domestica	MD02G1178200.v1.1 MD15G1288100.v1.1
prunus_persica	Prupe.6G229700_v2.0.a1 Prupe.6G229700_v2.0.a1 Prupe.6G229700_v2.0.a1
pyrus_communis	pycom02g14430 pycom15g25160
rosa_chinensis	RchiOBHm_Chr2g0106601
rosa_laevigata	RLG00000017519
rosa_multiflora	Rmu_sc0006221.1_g000010
rosa_roxburghii	Rroxscaffold_2G00136990
rosa_rugosa	Rorug02G0136600
rosa_samantha	Rh2AG187800 Rh2BG198800 Rh2CG192900 Rh2DG194000
rosa_wichuraiana	Rw2G014740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	317
AccBSI	CCGCTC	1 cut(s)	1021
AciI	CCGC	2 cut(s)	1019, 1078
AclWI	GGATC	2 cut(s)	655, 1031
AcsI	RAATTY	1 cut(s)	619
AcuI	CTGAAG	1 cut(s)	1046
AfaI	GTAC	2 cut(s)	837, 888
AfiI	CCNNNNNNNGG	2 cut(s)	208, 508
AjnI	CCWGG	3 cut(s)	548, 849, 882
AluBI	AGCT	9 cut(s)	31, 144, 377, 408, 571, 758, 877, 981, 1122
AluI	AGCT	9 cut(s)	31, 144, 377, 408, 571, 758, 877, 981, 1122
Alw21I	GWGCWC	1 cut(s)	33
Alw26I	GTCTC	6 cut(s)	108, 146, 232, 303, 467, 482
AlwI	GGATC	2 cut(s)	655, 1031
ApeKI	GCWGC	5 cut(s)	473, 758, 761, 948, 1119
ApoI	RAATTY	1 cut(s)	619
AseI	ATTAAT	1 cut(s)	783
AspLEI	GCGC	1 cut(s)	699
AspS9I	GGNCC	1 cut(s)	1066
AsuHPI	GGTGA	1 cut(s)	1008
AvaII	GGWCC	1 cut(s)	1066
BaeGI	GKGCMC	1 cut(s)	501
BanII	GRGCYC	1 cut(s)	33
Bbv12I	GWGCWC	1 cut(s)	33
BbvI	GCAGC	4 cut(s)	460, 745, 748, 960
BccI	CCATC	1 cut(s)	278
BciT130I	CCWGG	3 cut(s)	550, 851, 884
BclI	TGATCA	2 cut(s)	631, 639
BcoDI	GTCTC	6 cut(s)	108, 146, 232, 303, 467, 482
BfaI	CTAG	2 cut(s)	374, 945
BfmI	CTRYAG	2 cut(s)	750, 762
BfoI	RGCGCY	1 cut(s)	700
BisI	GCNGC	6 cut(s)	474, 759, 762, 949, 1079, 1120
BlpI	GCTNAGC	1 cut(s)	1115
BlsI	GCNGC	6 cut(s)	475, 760, 763, 950, 1080, 1121
Bme1390I	CCNGG	3 cut(s)	550, 851, 884
Bme18I	GGWCC	1 cut(s)	1066
BmgT120I	GGNCC	1 cut(s)	1066
BmrFI	CCNGG	3 cut(s)	550, 851, 884
BmsI	GCATC	1 cut(s)	1065
BpmI	CTGGAG	1 cut(s)	616
Bpu1102I	GCTNAGC	1 cut(s)	1115
BpuEI	CTTGAG	1 cut(s)	101
BsaI	GGTCTC	1 cut(s)	482
BsaJI	CCNNGG	3 cut(s)	431, 850, 913
BsaXI	ACNNNNNCTCC	4 cut(s)	637, 667, 668, 698
Bsc4I	CCNNNNNNNGG	2 cut(s)	208, 508
Bse1I	ACTGG	2 cut(s)	599, 608
Bse3DI	GCAATG	1 cut(s)	714
BseBI	CCWGG	3 cut(s)	550, 851, 884
BseDI	CCNNGG	3 cut(s)	431, 850, 913
BseGI	GGATG	3 cut(s)	441, 606, 879
BseLI	CCNNNNNNNGG	2 cut(s)	208, 508
BseMI	GCAATG	1 cut(s)	714
BseMII	CTCAG	1 cut(s)	294
BseNI	ACTGG	2 cut(s)	599, 608
BseSI	GKGCMC	1 cut(s)	501
BseXI	GCAGC	4 cut(s)	460, 745, 748, 960
BsiHKAI	GWGCWC	1 cut(s)	33
BslI	CCNNNNNNNGG	2 cut(s)	208, 508
BsmAI	GTCTC	6 cut(s)	108, 146, 232, 303, 467, 482
BsmBI	CGTCTC	1 cut(s)	303
BsmI	GAATGC	3 cut(s)	670, 872, 931
Bso31I	GGTCTC	1 cut(s)	482
Bsp1286I	GDGCHC	2 cut(s)	33, 501
Bsp143I	GATC	5 cut(s)	391, 631, 639, 660, 1036
Bsp1720I	GCTNAGC	1 cut(s)	1115
BspACI	CCGC	2 cut(s)	1019, 1078
BspCNI	CTCAG	1 cut(s)	293
BspMAI	CTGCAG	1 cut(s)	766
BspPI	GGATC	2 cut(s)	655, 1031
BspTNI	GGTCTC	1 cut(s)	482
BsrBI	CCGCTC	1 cut(s)	1021
BsrDI	GCAATG	1 cut(s)	714
BsrI	ACTGG	2 cut(s)	599, 608
BssECI	CCNNGG	3 cut(s)	431, 850, 913
BssMI	GATC	5 cut(s)	391, 631, 639, 660, 1036
BssT1I	CCWWGG	2 cut(s)	431, 913
Bst2UI	CCWGG	3 cut(s)	550, 851, 884
Bst4CI	ACNGT	3 cut(s)	168, 370, 904
Bst6I	CTCTTC	1 cut(s)	480
BstC8I	GCNNGC	2 cut(s)	898, 929
BstDEI	CTNAG	2 cut(s)	280, 1115
BstF5I	GGATG	3 cut(s)	441, 606, 879
BstH2I	RGCGCY	1 cut(s)	700
BstHHI	GCGC	1 cut(s)	699
BstKTI	GATC	5 cut(s)	394, 634, 642, 663, 1039
BstMAI	GTCTC	6 cut(s)	108, 146, 232, 303, 467, 482
BstMBI	GATC	5 cut(s)	391, 631, 639, 660, 1036
BstMWI	GCNNNNNNNGC	2 cut(s)	577, 1078
BstNI	CCWGG	3 cut(s)	550, 851, 884
BstSCI	CCNGG	3 cut(s)	548, 849, 882
BstSFI	CTRYAG	2 cut(s)	750, 762
BstSLI	GKGCMC	1 cut(s)	501
BstV1I	GCAGC	4 cut(s)	460, 745, 748, 960
BstX2I	RGATCY	2 cut(s)	660, 1036
BstXI	CCANNNNNNTGG	1 cut(s)	733
BstYI	RGATCY	2 cut(s)	660, 1036
BtsCI	GGATG	3 cut(s)	441, 606, 879
BtsIMutI	CAGTG	4 cut(s)	274, 366, 868, 900
Cac8I	GCNNGC	2 cut(s)	898, 929
CfoI	GCGC	1 cut(s)	699
Cfr13I	GGNCC	1 cut(s)	1066
CseI	GACGC	2 cut(s)	65, 320
Csp6I	GTAC	2 cut(s)	836, 887
CviAII	CATG	3 cut(s)	494, 637, 1002
CviQI	GTAC	2 cut(s)	836, 887
DdeI	CTNAG	2 cut(s)	280, 1115
DpnI	GATC	5 cut(s)	393, 633, 641, 662, 1038
DpnII	GATC	5 cut(s)	391, 631, 639, 660, 1036
DraI	TTTAAA	1 cut(s)	1048
DrdI	GACNNNNNNGTC	1 cut(s)	317
DseDI	GACNNNNNNGTC	1 cut(s)	317
Eam1104I	CTCTTC	1 cut(s)	480
EarI	CTCTTC	1 cut(s)	480
Ecl136II	GAGCTC	1 cut(s)	31
Eco130I	CCWWGG	2 cut(s)	431, 913
Eco24I	GRGCYC	1 cut(s)	33
Eco31I	GGTCTC	1 cut(s)	482
Eco47I	GGWCC	1 cut(s)	1066
Eco53kI	GAGCTC	1 cut(s)	31
Eco57I	CTGAAG	1 cut(s)	1046
EcoICRI	GAGCTC	1 cut(s)	31
EcoRII	CCWGG	3 cut(s)	548, 849, 882
EcoT14I	CCWWGG	2 cut(s)	431, 913
EcoT38I	GRGCYC	1 cut(s)	33
ErhI	CCWWGG	2 cut(s)	431, 913
Esp3I	CGTCTC	1 cut(s)	303
FaeI	CATG	3 cut(s)	497, 640, 1005
FalI	AAGNNNNNCTT	4 cut(s)	63, 95, 207, 239
FatI	CATG	3 cut(s)	493, 636, 1001
FbaI	TGATCA	2 cut(s)	631, 639
Fnu4HI	GCNGC	6 cut(s)	474, 759, 762, 949, 1079, 1120
FokI	GGATG	3 cut(s)	448, 613, 866
FriOI	GRGCYC	1 cut(s)	33
Fsp4HI	GCNGC	6 cut(s)	474, 759, 762, 949, 1079, 1120
FspBI	CTAG	2 cut(s)	374, 945
GlaI	GCGC	1 cut(s)	698
GluI	GCNGC	6 cut(s)	474, 759, 762, 949, 1079, 1120
GsuI	CTGGAG	1 cut(s)	616
HaeII	RGCGCY	1 cut(s)	700
HgaI	GACGC	2 cut(s)	65, 320
HhaI	GCGC	1 cut(s)	699
Hin1II	CATG	3 cut(s)	497, 640, 1005
Hin6I	GCGC	1 cut(s)	697
HinP1I	GCGC	1 cut(s)	697
HincII	GTYRAC	1 cut(s)	443
HindII	GTYRAC	1 cut(s)	443
HinfI	GANTC	7 cut(s)	20, 439, 527, 604, 722, 820, 998
HphI	GGTGA	1 cut(s)	1008
Hpy166II	GTNNAC	2 cut(s)	443, 836
Hpy188I	TCNGA	5 cut(s)	283, 306, 676, 819, 985
Hpy188III	TCNNGA	7 cut(s)	80, 322, 509, 590, 643, 726, 1064
Hpy8I	GTNNAC	2 cut(s)	443, 836
HpyAV	CCTTC	4 cut(s)	68, 512, 713, 756
HpyCH4III	ACNGT	3 cut(s)	168, 370, 904
HpyCH4V	TGCA	6 cut(s)	10, 517, 670, 719, 764, 907
HpyF10VI	GCNNNNNNNGC	2 cut(s)	577, 1078
HpyF3I	CTNAG	2 cut(s)	280, 1115
Hsp92II	CATG	3 cut(s)	497, 640, 1005
HspAI	GCGC	1 cut(s)	697
Ksp22I	TGATCA	2 cut(s)	631, 639
Kzo9I	GATC	5 cut(s)	391, 631, 639, 660, 1036
LmnI	GCTCC	3 cut(s)	36, 568, 1053
Lsp1109I	GCAGC	4 cut(s)	460, 745, 748, 960
LweI	GCATC	1 cut(s)	1065
MaeI	CTAG	2 cut(s)	374, 945
MaeIII	GTNAC	1 cut(s)	610
MalI	GATC	5 cut(s)	393, 633, 641, 662, 1038
MbiI	CCGCTC	1 cut(s)	1021
MboI	GATC	5 cut(s)	391, 631, 639, 660, 1036
MflI	RGATCY	2 cut(s)	660, 1036
MhlI	GDGCHC	2 cut(s)	33, 501
MluCI	AATT	3 cut(s)	234, 619, 789
MlyI	GAGTC	1 cut(s)	448
MnlI	CCTC	8 cut(s)	76, 517, 591, 639, 710, 1000, 1050, 1096
MseI	TTAA	4 cut(s)	293, 783, 1047, 1091
MspR9I	CCNGG	3 cut(s)	550, 851, 884
Mva1269I	GAATGC	3 cut(s)	670, 872, 931
MvaI	CCWGG	3 cut(s)	550, 851, 884
MwoI	GCNNNNNNNGC	2 cut(s)	577, 1078
NdeII	GATC	5 cut(s)	391, 631, 639, 660, 1036
NlaIII	CATG	3 cut(s)	497, 640, 1005
PctI	GAATGC	3 cut(s)	670, 872, 931
PfeI	GAWTC	6 cut(s)	20, 527, 604, 722, 820, 998
PkrI	GCNGC	6 cut(s)	475, 760, 763, 950, 1080, 1121
PleI	GAGTC	1 cut(s)	447
PpsI	GAGTC	1 cut(s)	447
PshBI	ATTAAT	1 cut(s)	783
Psp124BI	GAGCTC	1 cut(s)	33
Psp6I	CCWGG	3 cut(s)	548, 849, 882
PspGI	CCWGG	3 cut(s)	548, 849, 882
PspPI	GGNCC	1 cut(s)	1066
PstI	CTGCAG	1 cut(s)	766
PsuI	RGATCY	2 cut(s)	660, 1036
RsaI	GTAC	2 cut(s)	837, 888
RsaNI	GTAC	2 cut(s)	836, 887
SacI	GAGCTC	1 cut(s)	33
SaqAI	TTAA	4 cut(s)	293, 783, 1047, 1091
SatI	GCNGC	6 cut(s)	474, 759, 762, 949, 1079, 1120
Sau3AI	GATC	5 cut(s)	391, 631, 639, 660, 1036
Sau96I	GGNCC	1 cut(s)	1066
SchI	GAGTC	1 cut(s)	448
ScrFI	CCNGG	3 cut(s)	550, 851, 884
SduI	GDGCHC	2 cut(s)	33, 501
SfaNI	GCATC	1 cut(s)	1065
SfcI	CTRYAG	2 cut(s)	750, 762
SinI	GGWCC	1 cut(s)	1066
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
Sse9I	AATT	3 cut(s)	234, 619, 789
SsiI	CCGC	2 cut(s)	1019, 1078
SspMI	CTAG	2 cut(s)	374, 945
SstI	GAGCTC	1 cut(s)	33
StyD4I	CCNGG	3 cut(s)	548, 849, 882
StyI	CCWWGG	2 cut(s)	431, 913
TaaI	ACNGT	3 cut(s)	168, 370, 904
TaqI	TCGA	3 cut(s)	530, 810, 1042
TasI	AATT	3 cut(s)	234, 619, 789
TatI	WGTACW	1 cut(s)	835
TauI	GCSGC	1 cut(s)	1081
TfiI	GAWTC	6 cut(s)	20, 527, 604, 722, 820, 998
Tru1I	TTAA	4 cut(s)	293, 783, 1047, 1091
Tru9I	TTAA	4 cut(s)	293, 783, 1047, 1091
TscAI	CASTG	4 cut(s)	274, 373, 868, 907
TseI	GCWGC	5 cut(s)	473, 758, 761, 948, 1119
TspDTI	ATGAA	7 cut(s)	234, 395, 612, 617, 801, 924, 990
TspRI	CASTG	4 cut(s)	274, 373, 868, 907
VpaK11BI	GGWCC	1 cut(s)	1066
VspI	ATTAAT	1 cut(s)	783
XapI	RAATTY	1 cut(s)	619
XspI	CTAG	2 cut(s)	374, 945

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.