Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0011724

Physical Location & Seq

Genomic Coordinates Reverse (-)

23297675 .. 23299493

Gene Structure 1819 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G229700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGCTCTGCAAGAAGAACCCCAAGAGCTACAGAACCCTCCAATGGCTTTTGACGCTTTGTTTTGTGAAGAAGGTCTTGAGGAAGATTTGGGAGACAATGGTATTGAGGAAGAGAGTGAGGGTTGTGTTGGGAATATGGAAAAGCAGTCAACTTTCCCTCTGGTTTTGCTAGAAAATGACTTTTTTTGGGAAGATGATGAACTTGCCTCTCTAATCTCCAAAGAGGAACAGACCCATGTGTGTTTCAGTGGTTCAATCTCAGATGGGCCTTTAATGGCGGCTAGGAAAGAGGCAGTGGAGTGGATTTTGAGTGTTAAGGCACACTATGGGTTCTCTTCTTTGACTACTGTTTTAGCTGTGAACTACTTTGATAGGTTCATTGCCAGCCTACGGTTTCGGAGGGACAAGCCTTGGATGAGTCAGCTCGCTGCCGTCGCTTGTGTGTCTTTGGCTGCCAAAGTGGAAGAGATCCATGTGCCCCTTCTCTTAGATTTGCAAGTGGAGTCGTCAAAGTATGTATTTGAAGCAAAGACCATTCAAAGAATGGAGCTTTTGGTGCTATCAACTCTTGGGTGGAGGATGAATCCAGTAACTCCAAATTCATTCTTTGATCATATTATCAGGAGGTTTGGTTTGAAGATCCACTTACATTGGGAGTTTCTGTGGAGATGTGAGCGCCTCCTTCTCTCTGTCATTGCTGATTCCAGATTTATGTGCTTCATGCCTTCCATATTAGCTACTGCAACAATGCTTCATGTTATTGATGAGATTGAGGCATTTAATCCTGTGGAATACCAGAGTCAGCTTATGAATGTACTTAAAGTCAGTAAGGACAGAGTCAATGAGTGCTACAAGCTCATCCTGGAACTATCAGGCAGCTATGGCAACATCCACAACCAGAGCCACAAACGAAAGCATTTATCAGTCCCCGGCAGCCCTAATGGAGTTATTGATGCATCTTTCAGCTGTGATACATCAAATGATTCGTGGGCTGCAGCATCACCGGTCTCATCCTCACCAGATCCTCGATTTAAAAGGAGCAAACTGCAGGACCAGCAGATGCGGTTGCCTTCTCTAAATCGTGTGTCTGTGGATGTGCTTAGCAGTCCTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009987 GO:0010154 GO:0010374 GO:0010440 GO:0010444 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0090558 GO:0090627

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

372

Amino Acids

42.04

Weight (kDa)

5.1

Isoelectric Point (pI)

62.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011724)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50070
fragaria_vesca	FvH4_1g16680
malus_domestica	MD02G1178200.v1.1 MD15G1288100.v1.1
prunus_persica	Prupe.6G229700_v2.0.a1 Prupe.6G229700_v2.0.a1 Prupe.6G229700_v2.0.a1
pyrus_communis	pycom02g14430 pycom15g25160
rosa_chinensis	RchiOBHm_Chr2g0106601
rosa_laevigata	RLG00000017519
rosa_multiflora	Rmu_sc0006221.1_g000010
rosa_roxburghii	Rroxscaffold_2G00136990
rosa_rugosa	Rorug02G0136600
rosa_samantha	Rh2AG187800 Rh2BG198800 Rh2CG192900 Rh2DG194000
rosa_wichuraiana	Rw2G014740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	278, 1063
AclWI	GGATC	3 cut(s)	463, 634, 1016
AcsI	RAATTY	1 cut(s)	598
AfaI	GTAC	1 cut(s)	816
AfiI	CCNNNNNNNGG	2 cut(s)	43, 390
AgeI	ACCGGT	1 cut(s)	1003
AgsI	TTSAA	4 cut(s)	255, 524, 539, 637
AjnI	CCWGG	1 cut(s)	861
AluBI	AGCT	9 cut(s)	28, 356, 424, 550, 737, 805, 856, 879, 966
AluI	AGCT	9 cut(s)	28, 356, 424, 550, 737, 805, 856, 879, 966
Alw26I	GTCTC	2 cut(s)	87, 1012
AlwI	GGATC	3 cut(s)	463, 634, 1016
AoxI	GGCC	1 cut(s)	266
ApeKI	GCWGC	6 cut(s)	428, 452, 876, 933, 992, 995
ApoI	RAATTY	1 cut(s)	598
AsiGI	ACCGGT	1 cut(s)	1003
AspLEI	GCGC	1 cut(s)	678
AspS9I	GGNCC	2 cut(s)	266, 1051
AsuC2I	CCSGG	1 cut(s)	930
AsuHPI	GGTGA	2 cut(s)	993, 1008
AvaII	GGWCC	1 cut(s)	1051
BaeGI	GKGCMC	1 cut(s)	480
BbvI	GCAGC	6 cut(s)	415, 439, 888, 945, 979, 1007
BccI	CCATC	1 cut(s)	257
BceAI	ACGGC	1 cut(s)	416
BciT130I	CCWGG	1 cut(s)	863
BclI	TGATCA	1 cut(s)	610
BcnI	CCSGG	1 cut(s)	930
BcoDI	GTCTC	2 cut(s)	87, 1012
BfaI	CTAG	2 cut(s)	170, 282
BfmI	CTRYAG	3 cut(s)	29, 993, 1046
BfoI	RGCGCY	1 cut(s)	679
BisI	GCNGC	7 cut(s)	279, 429, 453, 877, 934, 993, 996
BlpI	GCTNAGC	1 cut(s)	1100
BlsI	GCNGC	7 cut(s)	280, 430, 454, 878, 935, 994, 997
Bme1390I	CCNGG	2 cut(s)	863, 930
Bme18I	GGWCC	1 cut(s)	1051
BmgT120I	GGNCC	2 cut(s)	266, 1051
BmrFI	CCNGG	2 cut(s)	863, 930
BmsI	GCATC	4 cut(s)	943, 965, 1007, 1050
Bpu1102I	GCTNAGC	1 cut(s)	1100
BpuEI	CTTGAG	1 cut(s)	98
BpuMI	CCSGG	1 cut(s)	930
BsaI	GGTCTC	1 cut(s)	1012
BsaJI	CCNNGG	2 cut(s)	410, 928
BsaWI	WCCGGW	1 cut(s)	1003
BsaXI	ACNNNNNCTCC	4 cut(s)	616, 646, 647, 677
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 390
Bse118I	RCCGGY	1 cut(s)	1003
Bse1I	ACTGG	1 cut(s)	587
Bse3DI	GCAATG	2 cut(s)	378, 693
BseBI	CCWGG	1 cut(s)	863
BseDI	CCNNGG	2 cut(s)	410, 928
BseGI	GGATG	6 cut(s)	420, 585, 858, 888, 1010, 1099
BseLI	CCNNNNNNNGG	2 cut(s)	43, 390
BseMI	GCAATG	2 cut(s)	378, 693
BseMII	CTCAG	1 cut(s)	273
BseNI	ACTGG	1 cut(s)	587
BseSI	GKGCMC	1 cut(s)	480
BseXI	GCAGC	6 cut(s)	415, 439, 888, 945, 979, 1007
BshFI	GGCC	1 cut(s)	268
BshTI	ACCGGT	1 cut(s)	1003
BsiSI	CCGG	2 cut(s)	930, 1004
BslFI	GGGAC	2 cut(s)	416, 911
BslI	CCNNNNNNNGG	2 cut(s)	43, 390
BsmAI	GTCTC	2 cut(s)	87, 1012
BsmFI	GGGAC	2 cut(s)	416, 911
BsnI	GGCC	1 cut(s)	268
Bso31I	GGTCTC	1 cut(s)	1012
Bsp1286I	GDGCHC	1 cut(s)	480
Bsp143I	GATC	4 cut(s)	468, 610, 639, 1021
Bsp1720I	GCTNAGC	1 cut(s)	1100
BspACI	CCGC	2 cut(s)	278, 1063
BspANI	GGCC	1 cut(s)	268
BspCNI	CTCAG	1 cut(s)	272
BspMAI	CTGCAG	2 cut(s)	997, 1050
BspPI	GGATC	3 cut(s)	463, 634, 1016
BspTNI	GGTCTC	1 cut(s)	1012
BsrDI	GCAATG	2 cut(s)	378, 693
BsrFI	RCCGGY	1 cut(s)	1003
BsrI	ACTGG	1 cut(s)	587
BssAI	RCCGGY	1 cut(s)	1003
BssECI	CCNNGG	2 cut(s)	410, 928
BssMI	GATC	4 cut(s)	468, 610, 639, 1021
BssT1I	CCWWGG	1 cut(s)	410
Bst2UI	CCWGG	1 cut(s)	863
Bst4CI	ACNGT	2 cut(s)	349, 393
Bst6I	CTCTTC	3 cut(s)	105, 340, 459
BstC8I	GCNNGC	2 cut(s)	385, 426
BstDEI	CTNAG	3 cut(s)	259, 487, 1100
BstF5I	GGATG	6 cut(s)	420, 585, 858, 888, 1010, 1099
BstH2I	RGCGCY	1 cut(s)	679
BstHHI	GCGC	1 cut(s)	678
BstKTI	GATC	4 cut(s)	471, 613, 642, 1024
BstMAI	GTCTC	2 cut(s)	87, 1012
BstMBI	GATC	4 cut(s)	468, 610, 639, 1021
BstMWI	GCNNNNNNNGC	5 cut(s)	53, 434, 556, 882, 1054
BstNI	CCWGG	1 cut(s)	863
BstSCI	CCNGG	2 cut(s)	861, 928
BstSFI	CTRYAG	3 cut(s)	29, 993, 1046
BstSLI	GKGCMC	1 cut(s)	480
BstV1I	GCAGC	6 cut(s)	415, 439, 888, 945, 979, 1007
BstX2I	RGATCY	3 cut(s)	468, 639, 1021
BstYI	RGATCY	3 cut(s)	468, 639, 1021
BsuRI	GGCC	1 cut(s)	268
BtsCI	GGATG	6 cut(s)	420, 585, 858, 888, 1010, 1099
BtsI	GCAGTG	1 cut(s)	300
BtsIMutI	CAGTG	2 cut(s)	253, 300
Cac8I	GCNNGC	2 cut(s)	385, 426
CfoI	GCGC	1 cut(s)	678
Cfr10I	RCCGGY	1 cut(s)	1003
Cfr13I	GGNCC	2 cut(s)	266, 1051
CseI	GACGC	1 cut(s)	62
Csp6I	GTAC	1 cut(s)	815
CspAI	ACCGGT	1 cut(s)	1003
CspCI	CAANNNNNGTGG	2 cut(s)	632, 667
CviAII	CATG	4 cut(s)	236, 473, 721, 755
CviQI	GTAC	1 cut(s)	815
DdeI	CTNAG	3 cut(s)	259, 487, 1100
DpnI	GATC	4 cut(s)	470, 612, 641, 1023
DpnII	GATC	4 cut(s)	468, 610, 639, 1021
DraI	TTTAAA	1 cut(s)	1033
Eam1104I	CTCTTC	3 cut(s)	105, 340, 459
EarI	CTCTTC	3 cut(s)	105, 340, 459
Eco130I	CCWWGG	1 cut(s)	410
Eco31I	GGTCTC	1 cut(s)	1012
Eco47I	GGWCC	1 cut(s)	1051
EcoRII	CCWGG	1 cut(s)	861
EcoT14I	CCWWGG	1 cut(s)	410
EcoT22I	ATGCAT	1 cut(s)	958
ErhI	CCWWGG	1 cut(s)	410
FaeI	CATG	4 cut(s)	239, 476, 724, 758
FalI	AAGNNNNNCTT	4 cut(s)	60, 92, 629, 661
FaqI	GGGAC	2 cut(s)	416, 911
FatI	CATG	4 cut(s)	235, 472, 720, 754
FbaI	TGATCA	1 cut(s)	610
Fnu4HI	GCNGC	7 cut(s)	279, 429, 453, 877, 934, 993, 996
FokI	GGATG	6 cut(s)	427, 592, 845, 875, 997, 1106
Fsp4HI	GCNGC	7 cut(s)	279, 429, 453, 877, 934, 993, 996
FspBI	CTAG	2 cut(s)	170, 282
GlaI	GCGC	1 cut(s)	677
GluI	GCNGC	7 cut(s)	279, 429, 453, 877, 934, 993, 996
HaeII	RGCGCY	1 cut(s)	679
HaeIII	GGCC	1 cut(s)	268
HapII	CCGG	2 cut(s)	930, 1004
HgaI	GACGC	1 cut(s)	62
HhaI	GCGC	1 cut(s)	678
Hin1II	CATG	4 cut(s)	239, 476, 724, 758
Hin6I	GCGC	1 cut(s)	676
HinP1I	GCGC	1 cut(s)	676
HincII	GTYRAC	1 cut(s)	150
HindII	GTYRAC	1 cut(s)	150
HinfI	GANTC	7 cut(s)	418, 503, 583, 701, 799, 837, 983
HpaII	CCGG	2 cut(s)	930, 1004
HphI	GGTGA	2 cut(s)	993, 1008
Hpy166II	GTNNAC	2 cut(s)	150, 361
Hpy188I	TCNGA	2 cut(s)	262, 399
Hpy188III	TCNNGA	3 cut(s)	77, 622, 705
Hpy8I	GTNNAC	2 cut(s)	150, 361
Hpy99I	CGWCG	1 cut(s)	437
HpyAV	CCTTC	5 cut(s)	65, 491, 692, 735, 1080
HpyCH4III	ACNGT	2 cut(s)	349, 393
HpyCH4V	TGCA	6 cut(s)	10, 496, 743, 956, 995, 1048
HpyF10VI	GCNNNNNNNGC	5 cut(s)	53, 434, 556, 882, 1054
HpyF3I	CTNAG	3 cut(s)	259, 487, 1100
Hsp92II	CATG	4 cut(s)	239, 476, 724, 758
HspAI	GCGC	1 cut(s)	676
Ksp22I	TGATCA	1 cut(s)	610
Kzo9I	GATC	4 cut(s)	468, 610, 639, 1021
LmnI	GCTCC	2 cut(s)	547, 1038
Lsp1109I	GCAGC	6 cut(s)	415, 439, 888, 945, 979, 1007
LweI	GCATC	4 cut(s)	943, 965, 1007, 1050
MaeI	CTAG	2 cut(s)	170, 282
MaeIII	GTNAC	1 cut(s)	589
MalI	GATC	4 cut(s)	470, 612, 641, 1023
MboI	GATC	4 cut(s)	468, 610, 639, 1021
MboII	GAAGA	8 cut(s)	26, 80, 95, 122, 203, 327, 476, 649
MflI	RGATCY	3 cut(s)	468, 639, 1021
MhlI	GDGCHC	1 cut(s)	480
MluCI	AATT	1 cut(s)	598
MlyI	GAGTC	4 cut(s)	427, 512, 808, 846
Mph1103I	ATGCAT	1 cut(s)	958
MseI	TTAA	6 cut(s)	272, 315, 780, 819, 1032, 1114
MspA1I	CMGCKG	1 cut(s)	966
MspI	CCGG	2 cut(s)	930, 1004
MspR9I	CCNGG	2 cut(s)	863, 930
MvaI	CCWGG	1 cut(s)	863
MwoI	GCNNNNNNNGC	5 cut(s)	53, 434, 556, 882, 1054
NciI	CCSGG	1 cut(s)	930
NdeII	GATC	4 cut(s)	468, 610, 639, 1021
NlaIII	CATG	4 cut(s)	239, 476, 724, 758
NsiI	ATGCAT	1 cut(s)	958
PfeI	GAWTC	3 cut(s)	583, 701, 983
PflFI	GACNNNGTC	1 cut(s)	836
PfoI	TCCNGGA	1 cut(s)	861
PinAI	ACCGGT	1 cut(s)	1003
PkrI	GCNGC	7 cut(s)	280, 430, 454, 878, 935, 994, 997
PleI	GAGTC	4 cut(s)	426, 511, 807, 845
PpsI	GAGTC	4 cut(s)	426, 511, 807, 845
Psp6I	CCWGG	1 cut(s)	861
PspGI	CCWGG	1 cut(s)	861
PspPI	GGNCC	2 cut(s)	266, 1051
PstI	CTGCAG	2 cut(s)	997, 1050
PsuI	RGATCY	3 cut(s)	468, 639, 1021
PsyI	GACNNNGTC	1 cut(s)	836
PvuII	CAGCTG	1 cut(s)	966
RsaI	GTAC	1 cut(s)	816
RsaNI	GTAC	1 cut(s)	815
SaqAI	TTAA	6 cut(s)	272, 315, 780, 819, 1032, 1114
SatI	GCNGC	7 cut(s)	279, 429, 453, 877, 934, 993, 996
Sau3AI	GATC	4 cut(s)	468, 610, 639, 1021
Sau96I	GGNCC	2 cut(s)	266, 1051
SchI	GAGTC	4 cut(s)	427, 512, 808, 846
ScrFI	CCNGG	2 cut(s)	863, 930
SduI	GDGCHC	1 cut(s)	480
SfaNI	GCATC	4 cut(s)	943, 965, 1007, 1050
SfcI	CTRYAG	3 cut(s)	29, 993, 1046
SinI	GGWCC	1 cut(s)	1051
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
Sse9I	AATT	1 cut(s)	598
SsiI	CCGC	2 cut(s)	278, 1063
SspMI	CTAG	2 cut(s)	170, 282
StyD4I	CCNGG	2 cut(s)	861, 928
StyI	CCWWGG	1 cut(s)	410
TaaI	ACNGT	2 cut(s)	349, 393
TaqI	TCGA	1 cut(s)	1027
TasI	AATT	1 cut(s)	598
TatI	WGTACW	1 cut(s)	814
TauI	GCSGC	1 cut(s)	281
TfiI	GAWTC	3 cut(s)	583, 701, 983
Tru1I	TTAA	6 cut(s)	272, 315, 780, 819, 1032, 1114
Tru9I	TTAA	6 cut(s)	272, 315, 780, 819, 1032, 1114
TscAI	CASTG	2 cut(s)	253, 300
TseI	GCWGC	6 cut(s)	428, 452, 876, 933, 992, 995
TspDTI	ATGAA	7 cut(s)	213, 367, 591, 596, 709, 743, 824
TspRI	CASTG	2 cut(s)	253, 300
Tth111I	GACNNNGTC	1 cut(s)	836
VpaK11BI	GGWCC	1 cut(s)	1051
XapI	RAATTY	1 cut(s)	598
XcmI	CCANNNNNNNNNTGG	1 cut(s)	541
XspI	CTAG	2 cut(s)	170, 282
Zsp2I	ATGCAT	1 cut(s)	958

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.