Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0011724

Physical Location & Seq

Genomic Coordinates Forward (+)

26539465 .. 26541334

Gene Structure 1870 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1288100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGCTCTGCAAGAAGAACCCCAAGAGCTCCAAAACCCTCCAGTGGCGTTCGACCTTTTATTATTCTGCGAGGAAGGATTTGAGGAAGATTTGAGAGACAATGGTAGTGATCAGGAGAGCGAGAACTGTGATGGGTTTTCAAAAAAGCAATCATCTTTCCCTTTGGTTGTTATGGAAAGTGATATTTTCTGGGAAAATGATGAACTTTCCTCTCTAATCTCCAAAGAGGAACAAACCCATGTGTGTTTCAGTGGCGAAATCTCAGATGGGTCTTTAATGGCTGCTCGGAAAGAGGCGGTTGAGTGGATTCTGAGTGTAAGGGCACACTATGGGTTCTCCTCTTTGACCACCGTTCTAGCTGTGAACTACTTTGATAGATTCATTGCCAGTCGGCCGTTTCAGAGGGACAAGCTGTGGATGAGTCAGCTCGCCGCCGTCGCCTGCGTCTCGTTGGCCGCCAAAGTGGAGGAGACCCATGTGCCCCTTCTCTTAGATTTGCAAGTGGAGGAATCAAAGTATGTTTTCGAAGCAAAAACCATTCAAAGAATGGAGCTTTTGGTGCTATCGACTCTTGGGTGGAGGATGAATCCGGTGACCCCAAATTCATACTTTGATCACATCATCAGGAGGTTCGGTTTGAAGATCCACCTGCATTGGGAGTTTCTGTGGAGATGTGAGCGTCTACTTCTATCCGTCATTGCGGATTCCAGATTTACTTGTTATTTGCCTTCCGTATTAGCTACTGCAACAATGCTGTATGTTATAGATGAGATTGAGGCATTTAATCCTGCGGAATACCAGAATCAGCTTATGAATTTACTTAAAGTCAGTAAGGACAGGGTAAATGAGTGCTCCAAGCTCATCCTGGAACTGTCAGGGAGCGTAGAAAACCAAAGCCACAAACGCAAGCATTTATCGGTACCCAGCAGCCCTAATGGGGTTATTAATGCGTCTTTCAGCTGTGACATGTCAAATGGTTCGTGGGCTGTGGCATCACTGGACTCATCCTCACCAGATCCTCAATTTAAAAGGAGTAGACTGCAGAACCAGCAGATGAGGTTGCCCTCTTTAAATCGTGTGTCTGTGGACGTGCTGAGCAGCTCACGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009987 GO:0010154 GO:0010374 GO:0010440 GO:0010444 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0090558 GO:0090627

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

370

Amino Acids

41.96

Weight (kDa)

5.06

Isoelectric Point (pI)

60.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	93 - 196	3e-26	Cyclin, N-terminal domain
Cyclin_C	PF02984	198 - 303	1e-18	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011724)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50070
fragaria_vesca	FvH4_1g16680
malus_domestica	MD02G1178200.v1.1 MD15G1288100.v1.1
prunus_persica	Prupe.6G229700_v2.0.a1 Prupe.6G229700_v2.0.a1 Prupe.6G229700_v2.0.a1
pyrus_communis	pycom02g14430 pycom15g25160
rosa_chinensis	RchiOBHm_Chr2g0106601
rosa_laevigata	RLG00000017519
rosa_multiflora	Rmu_sc0006221.1_g000010
rosa_roxburghii	Rroxscaffold_2G00136990
rosa_rugosa	Rorug02G0136600
rosa_samantha	Rh2AG187800 Rh2BG198800 Rh2CG192900 Rh2DG194000
rosa_wichuraiana	Rw2G014740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	657
Acc36I	ACCTGC	1 cut(s)	657
Acc65I	GGTACC	1 cut(s)	919
AccB1I	GGYRCC	1 cut(s)	919
AccI	GTMKAC	2 cut(s)	682, 1036
AciI	CCGC	5 cut(s)	296, 432, 456, 701, 791
AclWI	GGATC	2 cut(s)	637, 1010
AcoI	YGGCCR	2 cut(s)	392, 453
AcsI	RAATTY	2 cut(s)	601, 814
AfaI	GTAC	1 cut(s)	921
AfiI	CCNNNNNNNGG	3 cut(s)	43, 655, 937
AflIII	ACRYGT	1 cut(s)	966
AgsI	TTSAA	3 cut(s)	141, 542, 640
AjiI	CACGTC	1 cut(s)	1090
AjnI	CCWGG	1 cut(s)	864
Alw21I	GWGCWC	2 cut(s)	30, 854
Alw26I	GTCTC	3 cut(s)	90, 451, 464
AlwI	GGATC	2 cut(s)	637, 1010
AoxI	GGCC	2 cut(s)	392, 453
ApeKI	GCWGC	3 cut(s)	281, 927, 1098
ApoI	RAATTY	2 cut(s)	601, 814
AseI	ATTAAT	1 cut(s)	945
Asp718I	GGTACC	1 cut(s)	919
AsuHPI	GGTGA	2 cut(s)	604, 1002
AsuII	TTCGAA	1 cut(s)	525
BaeGI	GKGCMC	2 cut(s)	325, 483
BanI	GGYRCC	1 cut(s)	919
BanII	GRGCYC	1 cut(s)	30
Bbv12I	GWGCWC	2 cut(s)	30, 854
BbvI	GCAGC	2 cut(s)	268, 939
BccI	CCATC	2 cut(s)	125, 260
BceAI	ACGGC	2 cut(s)	379, 419
BciT130I	CCWGG	1 cut(s)	866
BclI	TGATCA	2 cut(s)	109, 613
BcoDI	GTCTC	3 cut(s)	90, 451, 464
BfaI	CTAG	1 cut(s)	356
BfmI	CTRYAG	1 cut(s)	1040
BfuAI	ACCTGC	1 cut(s)	657
BisI	GCNGC	5 cut(s)	282, 432, 456, 928, 1099
BlpI	GCTNAGC	1 cut(s)	1094
BlsI	GCNGC	5 cut(s)	283, 433, 457, 929, 1100
Bme1390I	CCNGG	1 cut(s)	866
BmgBI	CACGTC	1 cut(s)	1090
BmiI	GGNNCC	1 cut(s)	921
BmrFI	CCNGG	1 cut(s)	866
BmsI	GCATC	1 cut(s)	1001
BpmI	CTGGAG	1 cut(s)	24
Bpu1102I	GCTNAGC	1 cut(s)	1094
Bpu14I	TTCGAA	1 cut(s)	525
BsaI	GGTCTC	1 cut(s)	464
BsaWI	WCCGGW	1 cut(s)	589
BsaXI	ACNNNNNCTCC	4 cut(s)	619, 649, 650, 680
Bsc4I	CCNNNNNNNGG	3 cut(s)	43, 655, 937
Bse1I	ACTGG	3 cut(s)	41, 387, 1002
Bse3DI	GCAATG	2 cut(s)	381, 696
BseBI	CCWGG	1 cut(s)	866
BseGI	GGATG	4 cut(s)	423, 588, 861, 1004
BseLI	CCNNNNNNNGG	3 cut(s)	43, 655, 937
BseMI	GCAATG	2 cut(s)	381, 696
BseMII	CTCAG	3 cut(s)	276, 302, 1085
BseNI	ACTGG	3 cut(s)	41, 387, 1002
BseRI	GAGGAG	2 cut(s)	328, 482
BseSI	GKGCMC	2 cut(s)	325, 483
BseX3I	CGGCCG	1 cut(s)	392
BseXI	GCAGC	2 cut(s)	268, 939
BseYI	CCCAGC	1 cut(s)	923
Bsh1285I	CGRYCG	1 cut(s)	395
BshFI	GGCC	2 cut(s)	394, 455
BshNI	GGYRCC	1 cut(s)	919
BsiEI	CGRYCG	1 cut(s)	395
BsiHKAI	GWGCWC	2 cut(s)	30, 854
BsiSI	CCGG	1 cut(s)	590
BslFI	GGGAC	1 cut(s)	419
BslI	CCNNNNNNNGG	3 cut(s)	43, 655, 937
BsmAI	GTCTC	3 cut(s)	90, 451, 464
BsmBI	CGTCTC	1 cut(s)	451
BsmFI	GGGAC	1 cut(s)	419
BsnI	GGCC	2 cut(s)	394, 455
Bso31I	GGTCTC	1 cut(s)	464
Bsp119I	TTCGAA	1 cut(s)	525
Bsp1286I	GDGCHC	4 cut(s)	30, 325, 483, 854
Bsp143I	GATC	4 cut(s)	109, 613, 642, 1015
Bsp1720I	GCTNAGC	1 cut(s)	1094
BspACI	CCGC	5 cut(s)	296, 432, 456, 701, 791
BspANI	GGCC	2 cut(s)	394, 455
BspCNI	CTCAG	3 cut(s)	275, 303, 1086
BspLI	GGNNCC	1 cut(s)	921
BspMAI	CTGCAG	1 cut(s)	1044
BspMI	ACCTGC	1 cut(s)	657
BspPI	GGATC	2 cut(s)	637, 1010
BspT104I	TTCGAA	1 cut(s)	525
BspT107I	GGYRCC	1 cut(s)	919
BspTNI	GGTCTC	1 cut(s)	464
BsrDI	GCAATG	2 cut(s)	381, 696
BsrI	ACTGG	3 cut(s)	41, 387, 1002
BssMI	GATC	4 cut(s)	109, 613, 642, 1015
Bst2UI	CCWGG	1 cut(s)	866
Bst4CI	ACNGT	3 cut(s)	128, 352, 873
BstBI	TTCGAA	1 cut(s)	525
BstC8I	GCNNGC	3 cut(s)	429, 442, 908
BstDEI	CTNAG	4 cut(s)	262, 311, 490, 1094
BstEII	GGTNACC	1 cut(s)	592
BstF5I	GGATG	4 cut(s)	423, 588, 861, 1004
BstKTI	GATC	4 cut(s)	112, 616, 645, 1018
BstMAI	GTCTC	3 cut(s)	90, 451, 464
BstMBI	GATC	4 cut(s)	109, 613, 642, 1015
BstMCI	CGRYCG	1 cut(s)	395
BstMWI	GCNNNNNNNGC	4 cut(s)	437, 559, 903, 1048
BstNI	CCWGG	1 cut(s)	866
BstNSI	RCATGY	1 cut(s)	970
BstPI	GGTNACC	1 cut(s)	592
BstSCI	CCNGG	1 cut(s)	864
BstSFI	CTRYAG	1 cut(s)	1040
BstSLI	GKGCMC	2 cut(s)	325, 483
BstV1I	GCAGC	2 cut(s)	268, 939
BstX2I	RGATCY	2 cut(s)	642, 1015
BstYI	RGATCY	2 cut(s)	642, 1015
BstZI	CGGCCG	1 cut(s)	392
BsuRI	GGCC	2 cut(s)	394, 455
BtrI	CACGTC	1 cut(s)	1090
BtsCI	GGATG	4 cut(s)	423, 588, 861, 1004
BtsIMutI	CAGTG	3 cut(s)	48, 256, 995
BveI	ACCTGC	1 cut(s)	657
Cac8I	GCNNGC	3 cut(s)	429, 442, 908
CseI	GACGC	3 cut(s)	433, 668, 939
Csp6I	GTAC	1 cut(s)	920
CspCI	CAANNNNNGTGG	2 cut(s)	635, 670
CviAII	CATG	3 cut(s)	239, 476, 967
CviQI	GTAC	1 cut(s)	920
DdeI	CTNAG	4 cut(s)	262, 311, 490, 1094
DpnI	GATC	4 cut(s)	111, 615, 644, 1017
DpnII	GATC	4 cut(s)	109, 613, 642, 1015
DraI	TTTAAA	2 cut(s)	1027, 1071
EaeI	YGGCCR	2 cut(s)	392, 453
EagI	CGGCCG	1 cut(s)	392
Ecl136II	GAGCTC	1 cut(s)	28
EclXI	CGGCCG	1 cut(s)	392
Eco24I	GRGCYC	1 cut(s)	30
Eco31I	GGTCTC	1 cut(s)	464
Eco52I	CGGCCG	1 cut(s)	392
Eco53kI	GAGCTC	1 cut(s)	28
Eco91I	GGTNACC	1 cut(s)	592
EcoICRI	GAGCTC	1 cut(s)	28
EcoO65I	GGTNACC	1 cut(s)	592
EcoRII	CCWGG	1 cut(s)	864
EcoT38I	GRGCYC	1 cut(s)	30
Esp3I	CGTCTC	1 cut(s)	451
FaeI	CATG	3 cut(s)	242, 479, 970
FaqI	GGGAC	1 cut(s)	419
FatI	CATG	3 cut(s)	238, 475, 966
FbaI	TGATCA	2 cut(s)	109, 613
FblI	GTMKAC	2 cut(s)	682, 1036
Fnu4HI	GCNGC	5 cut(s)	282, 432, 456, 928, 1099
FokI	GGATG	4 cut(s)	430, 595, 848, 991
FriOI	GRGCYC	1 cut(s)	30
Fsp4HI	GCNGC	5 cut(s)	282, 432, 456, 928, 1099
FspBI	CTAG	1 cut(s)	356
GluI	GCNGC	5 cut(s)	282, 432, 456, 928, 1099
GsaI	CCCAGC	1 cut(s)	927
GsuI	CTGGAG	1 cut(s)	24
HaeIII	GGCC	2 cut(s)	394, 455
HapII	CCGG	1 cut(s)	590
HgaI	GACGC	3 cut(s)	433, 668, 939
Hin1II	CATG	3 cut(s)	242, 479, 970
HinfI	GANTC	9 cut(s)	307, 378, 421, 509, 568, 586, 704, 802, 1001
HpaII	CCGG	1 cut(s)	590
HphI	GGTGA	2 cut(s)	604, 1002
Hpy166II	GTNNAC	4 cut(s)	364, 683, 1037, 1087
Hpy188I	TCNGA	4 cut(s)	265, 288, 312, 402
Hpy188III	TCNNGA	3 cut(s)	113, 625, 708
Hpy8I	GTNNAC	4 cut(s)	364, 683, 1037, 1087
Hpy99I	CGWCG	1 cut(s)	440
HpyAV	CCTTC	3 cut(s)	68, 494, 738
HpyCH4III	ACNGT	3 cut(s)	128, 352, 873
HpyCH4IV	ACGT	2 cut(s)	1089, 1105
HpyCH4V	TGCA	5 cut(s)	10, 499, 652, 746, 1042
HpyF10VI	GCNNNNNNNGC	4 cut(s)	437, 559, 903, 1048
HpyF3I	CTNAG	4 cut(s)	262, 311, 490, 1094
HpySE526I	ACGT	2 cut(s)	1089, 1105
Hsp92II	CATG	3 cut(s)	242, 479, 970
KpnI	GGTACC	1 cut(s)	923
Ksp22I	TGATCA	2 cut(s)	109, 613
Kzo9I	GATC	4 cut(s)	109, 613, 642, 1015
LmnI	GCTCC	4 cut(s)	33, 550, 857, 879
Lsp1109I	GCAGC	2 cut(s)	268, 939
LweI	GCATC	1 cut(s)	1001
MaeI	CTAG	1 cut(s)	356
MaeII	ACGT	2 cut(s)	1089, 1105
MaeIII	GTNAC	2 cut(s)	592, 962
MalI	GATC	4 cut(s)	111, 615, 644, 1017
MboI	GATC	4 cut(s)	109, 613, 642, 1015
MboII	GAAGA	3 cut(s)	26, 98, 652
MflI	RGATCY	2 cut(s)	642, 1015
MhlI	GDGCHC	4 cut(s)	30, 325, 483, 854
MluCI	AATT	3 cut(s)	601, 814, 1022
MlyI	GAGTC	3 cut(s)	430, 562, 995
MseI	TTAA	6 cut(s)	275, 783, 822, 945, 1026, 1070
MspA1I	CMGCKG	1 cut(s)	960
MspI	CCGG	1 cut(s)	590
MspR9I	CCNGG	1 cut(s)	866
MvaI	CCWGG	1 cut(s)	866
MwoI	GCNNNNNNNGC	4 cut(s)	437, 559, 903, 1048
NdeII	GATC	4 cut(s)	109, 613, 642, 1015
NlaIII	CATG	3 cut(s)	242, 479, 970
NlaIV	GGNNCC	1 cut(s)	921
NmuCI	GTSAC	2 cut(s)	592, 962
NspI	RCATGY	1 cut(s)	970
NspV	TTCGAA	1 cut(s)	525
PaqCI	CACCTGC	1 cut(s)	657
PciI	ACATGT	1 cut(s)	966
PfeI	GAWTC	6 cut(s)	307, 378, 509, 586, 704, 802
PfoI	TCCNGGA	1 cut(s)	864
PkrI	GCNGC	5 cut(s)	283, 433, 457, 929, 1100
PleI	GAGTC	3 cut(s)	429, 562, 995
PpsI	GAGTC	3 cut(s)	429, 562, 995
PscI	ACATGT	1 cut(s)	966
PshBI	ATTAAT	1 cut(s)	945
Psp124BI	GAGCTC	1 cut(s)	30
Psp6I	CCWGG	1 cut(s)	864
PspEI	GGTNACC	1 cut(s)	592
PspFI	CCCAGC	1 cut(s)	923
PspGI	CCWGG	1 cut(s)	864
PspN4I	GGNNCC	1 cut(s)	921
PstI	CTGCAG	1 cut(s)	1044
PsuI	RGATCY	2 cut(s)	642, 1015
PvuII	CAGCTG	1 cut(s)	960
RsaI	GTAC	1 cut(s)	921
RsaNI	GTAC	1 cut(s)	920
SacI	GAGCTC	1 cut(s)	30
SaqAI	TTAA	6 cut(s)	275, 783, 822, 945, 1026, 1070
SatI	GCNGC	5 cut(s)	282, 432, 456, 928, 1099
Sau3AI	GATC	4 cut(s)	109, 613, 642, 1015
SchI	GAGTC	3 cut(s)	430, 562, 995
ScrFI	CCNGG	1 cut(s)	866
SduI	GDGCHC	4 cut(s)	30, 325, 483, 854
SfaNI	GCATC	1 cut(s)	1001
SfcI	CTRYAG	1 cut(s)	1040
SfuI	TTCGAA	1 cut(s)	525
Sse9I	AATT	3 cut(s)	601, 814, 1022
SsiI	CCGC	5 cut(s)	296, 432, 456, 701, 791
SspMI	CTAG	1 cut(s)	356
SstI	GAGCTC	1 cut(s)	30
StyD4I	CCNGG	1 cut(s)	864
TaaI	ACNGT	3 cut(s)	128, 352, 873
TaiI	ACGT	2 cut(s)	1092, 1108
TaqI	TCGA	3 cut(s)	51, 525, 566
TasI	AATT	3 cut(s)	601, 814, 1022
TauI	GCSGC	2 cut(s)	434, 458
TfiI	GAWTC	6 cut(s)	307, 378, 509, 586, 704, 802
Tru1I	TTAA	6 cut(s)	275, 783, 822, 945, 1026, 1070
Tru9I	TTAA	6 cut(s)	275, 783, 822, 945, 1026, 1070
TscAI	CASTG	3 cut(s)	48, 256, 1002
TseFI	GTSAC	2 cut(s)	592, 962
TseI	GCWGC	3 cut(s)	281, 927, 1098
Tsp45I	GTSAC	2 cut(s)	592, 962
TspDTI	ATGAA	5 cut(s)	216, 370, 594, 599, 827
TspGWI	ACGGA	2 cut(s)	682, 721
TspRI	CASTG	3 cut(s)	48, 256, 1002
VspI	ATTAAT	1 cut(s)	945
XapI	RAATTY	2 cut(s)	601, 814
XceI	RCATGY	1 cut(s)	970
XcmI	CCANNNNNNNNNTGG	2 cut(s)	544, 862
XmiI	GTMKAC	2 cut(s)	682, 1036
XspI	CTAG	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.