Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006221.1

Orthogroup ID

OG0011724

Physical Location & Seq

Genomic Coordinates Reverse (-)

35177 .. 36670

Gene Structure 1494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006221.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

atggctctgcaagaacaagattcccaagagctccaaaacccaccaatgcttttagacgctttgttctgtgaagaaggtcttgagggagaagaagaagaagaagatttgggagacaatggtgttgaagaacagagcgagagctgtgttgagactttggaaaaacagtctgtttcccctttggttatgtcaaaaggcgacctgttttgggaagaagatgaacttgtctctctaatttcaaaagagaaacaaacccatgtctgtttcagtggttcaaactcagatgggtctttaatggtggctcggagagacgcattagtctggattttgagtgtgaaatcacactatgggttttcttgtttgaccactgttctagctatgaactactttgatcggttcagttcaagctcggtgtttcaaaaggacaagccttggatgagtcaactaactgctgtggcttgtctctctctggctgccaaagtggaagagacccatgtgccccttcttctggatttgcaaatggaggaatcgaagtatgtatttgaagccaggactattcaaagaatggagcttttggtgctttcaactcttgactggaggatgaatccagtaaccccaaattcattctttgatcacatgatcaggaggcttggtttgaagatccatttgcattcggagtttctgtggagatgtgagcgcctccttctctctgtcattgcagattccagatttctggtctttctgccttctatagtagctgctgcagtaatgctgtatgttattaatgaaattgaaacattcaatcctgtcgattatcagaatcaggttttgagtgtactcaaagtcagccagggcatagtcagtgaatgctacaagctcatcctggtactatcagccagcactgtgcaaaaccaagggcataaacgcaagcattcatttatacctagcagcccaagtggagttatagatgtatgtttcagctctgatacctcaaatgattcatgggctgtggcttcaccgctctcatctttgccagatcctcgatttaaaaggagcagacttcaggaccagcagatgcggctaccctcgttaaatcgtgtatctgttgatgtgcttagcagctctcgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009987 GO:0010154 GO:0010374 GO:0010440 GO:0010444 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0090558 GO:0090627

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

375

Amino Acids

42.34

Weight (kDa)

4.89

Isoelectric Point (pI)

62.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011724)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50070
fragaria_vesca	FvH4_1g16680
malus_domestica	MD02G1178200.v1.1 MD15G1288100.v1.1
prunus_persica	Prupe.6G229700_v2.0.a1 Prupe.6G229700_v2.0.a1 Prupe.6G229700_v2.0.a1
pyrus_communis	pycom02g14430 pycom15g25160
rosa_chinensis	RchiOBHm_Chr2g0106601
rosa_laevigata	RLG00000017519
rosa_multiflora	Rmu_sc0006221.1_g000010
rosa_roxburghii	Rroxscaffold_2G00136990
rosa_rugosa	Rorug02G0136600
rosa_samantha	Rh2AG187800 Rh2BG198800 Rh2CG192900 Rh2DG194000
rosa_wichuraiana	Rw2G014740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	314
AccBSI	CCGCTC	1 cut(s)	1018
AciI	CCGC	2 cut(s)	1016, 1075
AclWI	GGATC	2 cut(s)	652, 1028
AcsI	RAATTY	1 cut(s)	616
AcuI	CTGAAG	1 cut(s)	1043
AfaI	GTAC	2 cut(s)	834, 885
AfiI	CCNNNNNNNGG	2 cut(s)	205, 505
AjnI	CCWGG	3 cut(s)	545, 846, 879
AluBI	AGCT	9 cut(s)	31, 141, 374, 405, 568, 755, 874, 978, 1119
AluI	AGCT	9 cut(s)	31, 141, 374, 405, 568, 755, 874, 978, 1119
Alw21I	GWGCWC	1 cut(s)	33
Alw26I	GTCTC	6 cut(s)	105, 143, 229, 300, 464, 479
AlwI	GGATC	2 cut(s)	652, 1028
ApeKI	GCWGC	5 cut(s)	470, 755, 758, 945, 1116
ApoI	RAATTY	1 cut(s)	616
AseI	ATTAAT	1 cut(s)	780
AspLEI	GCGC	1 cut(s)	696
AspS9I	GGNCC	1 cut(s)	1063
AsuHPI	GGTGA	1 cut(s)	1005
AvaII	GGWCC	1 cut(s)	1063
BaeGI	GKGCMC	1 cut(s)	498
BanII	GRGCYC	1 cut(s)	33
Bbv12I	GWGCWC	1 cut(s)	33
BbvI	GCAGC	4 cut(s)	457, 742, 745, 957
BccI	CCATC	1 cut(s)	275
BciT130I	CCWGG	3 cut(s)	547, 848, 881
BclI	TGATCA	2 cut(s)	628, 636
BcoDI	GTCTC	6 cut(s)	105, 143, 229, 300, 464, 479
BfaI	CTAG	2 cut(s)	371, 942
BfmI	CTRYAG	2 cut(s)	747, 759
BfoI	RGCGCY	1 cut(s)	697
BisI	GCNGC	6 cut(s)	471, 756, 759, 946, 1076, 1117
BlpI	GCTNAGC	1 cut(s)	1112
BlsI	GCNGC	6 cut(s)	472, 757, 760, 947, 1077, 1118
Bme1390I	CCNGG	3 cut(s)	547, 848, 881
Bme18I	GGWCC	1 cut(s)	1063
BmgT120I	GGNCC	1 cut(s)	1063
BmrFI	CCNGG	3 cut(s)	547, 848, 881
BmsI	GCATC	1 cut(s)	1062
BpmI	CTGGAG	1 cut(s)	613
Bpu1102I	GCTNAGC	1 cut(s)	1112
BpuEI	CTTGAG	1 cut(s)	101
BsaI	GGTCTC	1 cut(s)	479
BsaJI	CCNNGG	3 cut(s)	428, 847, 910
BsaXI	ACNNNNNCTCC	4 cut(s)	634, 664, 665, 695
Bsc4I	CCNNNNNNNGG	2 cut(s)	205, 505
Bse1I	ACTGG	2 cut(s)	596, 605
Bse3DI	GCAATG	1 cut(s)	711
BseBI	CCWGG	3 cut(s)	547, 848, 881
BseDI	CCNNGG	3 cut(s)	428, 847, 910
BseGI	GGATG	3 cut(s)	438, 603, 876
BseLI	CCNNNNNNNGG	2 cut(s)	205, 505
BseMI	GCAATG	1 cut(s)	711
BseMII	CTCAG	1 cut(s)	291
BseNI	ACTGG	2 cut(s)	596, 605
BseSI	GKGCMC	1 cut(s)	498
BseXI	GCAGC	4 cut(s)	457, 742, 745, 957
BsiHKAI	GWGCWC	1 cut(s)	33
BslI	CCNNNNNNNGG	2 cut(s)	205, 505
BsmAI	GTCTC	6 cut(s)	105, 143, 229, 300, 464, 479
BsmBI	CGTCTC	1 cut(s)	300
BsmI	GAATGC	3 cut(s)	667, 869, 928
Bso31I	GGTCTC	1 cut(s)	479
Bsp1286I	GDGCHC	2 cut(s)	33, 498
Bsp143I	GATC	5 cut(s)	388, 628, 636, 657, 1033
Bsp1720I	GCTNAGC	1 cut(s)	1112
BspACI	CCGC	2 cut(s)	1016, 1075
BspCNI	CTCAG	1 cut(s)	290
BspMAI	CTGCAG	1 cut(s)	763
BspPI	GGATC	2 cut(s)	652, 1028
BspTNI	GGTCTC	1 cut(s)	479
BsrBI	CCGCTC	1 cut(s)	1018
BsrDI	GCAATG	1 cut(s)	711
BsrI	ACTGG	2 cut(s)	596, 605
BssECI	CCNNGG	3 cut(s)	428, 847, 910
BssMI	GATC	5 cut(s)	388, 628, 636, 657, 1033
BssT1I	CCWWGG	2 cut(s)	428, 910
Bst2UI	CCWGG	3 cut(s)	547, 848, 881
Bst4CI	ACNGT	3 cut(s)	165, 367, 901
Bst6I	CTCTTC	1 cut(s)	477
BstC8I	GCNNGC	2 cut(s)	895, 926
BstDEI	CTNAG	2 cut(s)	277, 1112
BstF5I	GGATG	3 cut(s)	438, 603, 876
BstH2I	RGCGCY	1 cut(s)	697
BstHHI	GCGC	1 cut(s)	696
BstKTI	GATC	5 cut(s)	391, 631, 639, 660, 1036
BstMAI	GTCTC	6 cut(s)	105, 143, 229, 300, 464, 479
BstMBI	GATC	5 cut(s)	388, 628, 636, 657, 1033
BstMWI	GCNNNNNNNGC	2 cut(s)	574, 1075
BstNI	CCWGG	3 cut(s)	547, 848, 881
BstSCI	CCNGG	3 cut(s)	545, 846, 879
BstSFI	CTRYAG	2 cut(s)	747, 759
BstSLI	GKGCMC	1 cut(s)	498
BstV1I	GCAGC	4 cut(s)	457, 742, 745, 957
BstX2I	RGATCY	2 cut(s)	657, 1033
BstXI	CCANNNNNNTGG	1 cut(s)	730
BstYI	RGATCY	2 cut(s)	657, 1033
BtsCI	GGATG	3 cut(s)	438, 603, 876
BtsIMutI	CAGTG	4 cut(s)	271, 363, 865, 897
Cac8I	GCNNGC	2 cut(s)	895, 926
CfoI	GCGC	1 cut(s)	696
Cfr13I	GGNCC	1 cut(s)	1063
CseI	GACGC	2 cut(s)	65, 317
Csp6I	GTAC	2 cut(s)	833, 884
CviAII	CATG	4 cut(s)	254, 491, 634, 999
CviQI	GTAC	2 cut(s)	833, 884
DdeI	CTNAG	2 cut(s)	277, 1112
DpnI	GATC	5 cut(s)	390, 630, 638, 659, 1035
DpnII	GATC	5 cut(s)	388, 628, 636, 657, 1033
DraI	TTTAAA	1 cut(s)	1045
DrdI	GACNNNNNNGTC	1 cut(s)	314
DseDI	GACNNNNNNGTC	1 cut(s)	314
Eam1104I	CTCTTC	1 cut(s)	477
EarI	CTCTTC	1 cut(s)	477
Ecl136II	GAGCTC	1 cut(s)	31
Eco130I	CCWWGG	2 cut(s)	428, 910
Eco24I	GRGCYC	1 cut(s)	33
Eco31I	GGTCTC	1 cut(s)	479
Eco47I	GGWCC	1 cut(s)	1063
Eco53kI	GAGCTC	1 cut(s)	31
Eco57I	CTGAAG	1 cut(s)	1043
EcoICRI	GAGCTC	1 cut(s)	31
EcoRII	CCWGG	3 cut(s)	545, 846, 879
EcoT14I	CCWWGG	2 cut(s)	428, 910
EcoT38I	GRGCYC	1 cut(s)	33
ErhI	CCWWGG	2 cut(s)	428, 910
Esp3I	CGTCTC	1 cut(s)	300
FaeI	CATG	4 cut(s)	257, 494, 637, 1002
FalI	AAGNNNNNCTT	4 cut(s)	63, 95, 204, 236
FatI	CATG	4 cut(s)	253, 490, 633, 998
FbaI	TGATCA	2 cut(s)	628, 636
Fnu4HI	GCNGC	6 cut(s)	471, 756, 759, 946, 1076, 1117
FokI	GGATG	3 cut(s)	445, 610, 863
FriOI	GRGCYC	1 cut(s)	33
Fsp4HI	GCNGC	6 cut(s)	471, 756, 759, 946, 1076, 1117
FspBI	CTAG	2 cut(s)	371, 942
GlaI	GCGC	1 cut(s)	695
GluI	GCNGC	6 cut(s)	471, 756, 759, 946, 1076, 1117
GsuI	CTGGAG	1 cut(s)	613
HaeII	RGCGCY	1 cut(s)	697
HgaI	GACGC	2 cut(s)	65, 317
HhaI	GCGC	1 cut(s)	696
Hin1II	CATG	4 cut(s)	257, 494, 637, 1002
Hin6I	GCGC	1 cut(s)	694
HinP1I	GCGC	1 cut(s)	694
HincII	GTYRAC	1 cut(s)	440
HindII	GTYRAC	1 cut(s)	440
HinfI	GANTC	7 cut(s)	20, 436, 524, 601, 719, 817, 995
HphI	GGTGA	1 cut(s)	1005
Hpy166II	GTNNAC	2 cut(s)	440, 833
Hpy188I	TCNGA	5 cut(s)	280, 303, 673, 816, 982
Hpy188III	TCNNGA	7 cut(s)	80, 319, 506, 587, 640, 723, 1061
Hpy8I	GTNNAC	2 cut(s)	440, 833
HpyAV	CCTTC	4 cut(s)	68, 509, 710, 753
HpyCH4III	ACNGT	3 cut(s)	165, 367, 901
HpyCH4V	TGCA	6 cut(s)	10, 514, 667, 716, 761, 904
HpyF10VI	GCNNNNNNNGC	2 cut(s)	574, 1075
HpyF3I	CTNAG	2 cut(s)	277, 1112
Hsp92II	CATG	4 cut(s)	257, 494, 637, 1002
HspAI	GCGC	1 cut(s)	694
Ksp22I	TGATCA	2 cut(s)	628, 636
Kzo9I	GATC	5 cut(s)	388, 628, 636, 657, 1033
LmnI	GCTCC	3 cut(s)	36, 565, 1050
Lsp1109I	GCAGC	4 cut(s)	457, 742, 745, 957
LweI	GCATC	1 cut(s)	1062
MaeI	CTAG	2 cut(s)	371, 942
MaeIII	GTNAC	1 cut(s)	607
MalI	GATC	5 cut(s)	390, 630, 638, 659, 1035
MbiI	CCGCTC	1 cut(s)	1018
MboI	GATC	5 cut(s)	388, 628, 636, 657, 1033
MflI	RGATCY	2 cut(s)	657, 1033
MhlI	GDGCHC	2 cut(s)	33, 498
MluCI	AATT	3 cut(s)	231, 616, 786
MlyI	GAGTC	1 cut(s)	445
MnlI	CCTC	8 cut(s)	76, 514, 588, 636, 707, 997, 1047, 1093
MseI	TTAA	4 cut(s)	290, 780, 1044, 1088
MspR9I	CCNGG	3 cut(s)	547, 848, 881
Mva1269I	GAATGC	3 cut(s)	667, 869, 928
MvaI	CCWGG	3 cut(s)	547, 848, 881
MwoI	GCNNNNNNNGC	2 cut(s)	574, 1075
NdeII	GATC	5 cut(s)	388, 628, 636, 657, 1033
NlaIII	CATG	4 cut(s)	257, 494, 637, 1002
PctI	GAATGC	3 cut(s)	667, 869, 928
PfeI	GAWTC	6 cut(s)	20, 524, 601, 719, 817, 995
PkrI	GCNGC	6 cut(s)	472, 757, 760, 947, 1077, 1118
PleI	GAGTC	1 cut(s)	444
PpsI	GAGTC	1 cut(s)	444
PshBI	ATTAAT	1 cut(s)	780
Psp124BI	GAGCTC	1 cut(s)	33
Psp6I	CCWGG	3 cut(s)	545, 846, 879
PspGI	CCWGG	3 cut(s)	545, 846, 879
PspPI	GGNCC	1 cut(s)	1063
PstI	CTGCAG	1 cut(s)	763
PsuI	RGATCY	2 cut(s)	657, 1033
RsaI	GTAC	2 cut(s)	834, 885
RsaNI	GTAC	2 cut(s)	833, 884
SacI	GAGCTC	1 cut(s)	33
SaqAI	TTAA	4 cut(s)	290, 780, 1044, 1088
SatI	GCNGC	6 cut(s)	471, 756, 759, 946, 1076, 1117
Sau3AI	GATC	5 cut(s)	388, 628, 636, 657, 1033
Sau96I	GGNCC	1 cut(s)	1063
SchI	GAGTC	1 cut(s)	445
ScrFI	CCNGG	3 cut(s)	547, 848, 881
SduI	GDGCHC	2 cut(s)	33, 498
SfaNI	GCATC	1 cut(s)	1062
SfcI	CTRYAG	2 cut(s)	747, 759
SinI	GGWCC	1 cut(s)	1063
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
Sse9I	AATT	3 cut(s)	231, 616, 786
SsiI	CCGC	2 cut(s)	1016, 1075
SspMI	CTAG	2 cut(s)	371, 942
SstI	GAGCTC	1 cut(s)	33
StyD4I	CCNGG	3 cut(s)	545, 846, 879
StyI	CCWWGG	2 cut(s)	428, 910
TaaI	ACNGT	3 cut(s)	165, 367, 901
TaqI	TCGA	3 cut(s)	527, 807, 1039
TasI	AATT	3 cut(s)	231, 616, 786
TatI	WGTACW	1 cut(s)	832
TauI	GCSGC	1 cut(s)	1078
TfiI	GAWTC	6 cut(s)	20, 524, 601, 719, 817, 995
Tru1I	TTAA	4 cut(s)	290, 780, 1044, 1088
Tru9I	TTAA	4 cut(s)	290, 780, 1044, 1088
TscAI	CASTG	4 cut(s)	271, 370, 865, 904
TseI	GCWGC	5 cut(s)	470, 755, 758, 945, 1116
TspDTI	ATGAA	7 cut(s)	231, 392, 609, 614, 798, 921, 987
TspRI	CASTG	4 cut(s)	271, 370, 865, 904
VpaK11BI	GGWCC	1 cut(s)	1063
VspI	ATTAAT	1 cut(s)	780
XapI	RAATTY	1 cut(s)	616
XspI	CTAG	2 cut(s)	371, 942

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.