Rh2DG194000

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0011724
Physical Location & Seq
Forward (+)
17810713 .. 17812778
2066 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG194000.1

Sequence Viewer

Length: 798 bp
ATGGCTCTGCAAGAACAAGATTCCCAAGAGCTCCAAAACCCACCAATGCTTTTAGACGCTTTGTTCTGTGAAGAAGGTCTTGAGGGAGAAGAAGAAGAAGAAGATTTGGGAGACAATGGTGTTGAAGAACAGAGCGAGAGCTGTGTTGAGACTTTGGAAAAACAGGCTGTTTCCCCTTTGGTTATGTCAAAAGGCGACCTGTTTTGGGAAGAAGATGAACTTGTCTCTCTAATTTCAAAAGAGAAACAAACCCATGTCTGTTTCAGTGGTTCAAACTCAGATGGGTCTTTAATGGTGGCTCGGAGAGAAGCATTAGTCTGGATTTTGAGTGTGAAATCACACTATGGGTTGTCTTGTTTGACCACTGTTCTAGCTATGAACTACTTTGATCGGTTCAGTTCAAGCTCGGTGTTTCAAAAGGACAAGCCTTGGATGAGTCAACTAACTGCTGTGGCTTGTCTCTCTCTGGCTGCCAAAGTGGAAGAGACCCATGTGCCCCTTCTTCTGGATTTGCAAGTGGAGGAATCAAAGTATGTATTTGAAGCCAGGACTATTCAAAGAATGGAGCTTTTGGTGCTTTCAACTCTTGACTGGAGGATGAATCCGGTAACCCCAAATTCATTCTTTGATCACATGATCAGGAGGCTTGGTTTGAAGATCCATTTGCATTCGGAGTTTCTGTGGAGATGTGAGCGCCTCCTTCTCTCTGTCATTGCAGGTGAGCAATCAGATAGCTCTTCAAGTGTATTAGTATCAATCCTACACCATAAAAAAAGAAATGTACTCATAATGATATGA

Protein Analysis

265

Amino Acids

30.1

Weight (kDa)

4.77

Isoelectric Point (pI)

66.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 93 - 201 6.6e-26 Cyclin, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011724)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50070
fragaria_vesca FvH4_1g16680
malus_domestica MD02G1178200.v1.1 MD15G1288100.v1.1
prunus_persica Prupe.6G229700_v2.0.a1 Prupe.6G229700_v2.0.a1 Prupe.6G229700_v2.0.a1
pyrus_communis pycom02g14430 pycom15g25160
rosa_chinensis RchiOBHm_Chr2g0106601
rosa_laevigata RLG00000017519
rosa_multiflora Rmu_sc0006221.1_g000010
rosa_roxburghii Rroxscaffold_2G00136990
rosa_rugosa Rorug02G0136600
rosa_samantha Rh2AG187800 Rh2BG198800 Rh2CG192900 Rh2DG194000
rosa_wichuraiana Rw2G014740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 707
Acc36I ACCTGC 1 cut(s) 707
AclWI GGATC 1 cut(s) 652
AcsI RAATTY 1 cut(s) 616
AfaI GTAC 1 cut(s) 783
AfiI CCNNNNNNNGG 2 cut(s) 205, 505
AjnI CCWGG 1 cut(s) 545
AluBI AGCT 6 cut(s) 31, 141, 374, 405, 568, 735
AluI AGCT 6 cut(s) 31, 141, 374, 405, 568, 735
Alw21I GWGCWC 1 cut(s) 33
Alw26I GTCTC 5 cut(s) 105, 143, 229, 464, 479
AlwI GGATC 1 cut(s) 652
ApeKI GCWGC 1 cut(s) 470
ApoI RAATTY 1 cut(s) 616
AspLEI GCGC 1 cut(s) 696
AsuHPI GGTGA 1 cut(s) 731
BaeGI GKGCMC 1 cut(s) 498
BanII GRGCYC 1 cut(s) 33
Bbv12I GWGCWC 1 cut(s) 33
BbvI GCAGC 1 cut(s) 457
BccI CCATC 1 cut(s) 275
BciT130I CCWGG 1 cut(s) 547
BclI TGATCA 2 cut(s) 628, 636
BcoDI GTCTC 5 cut(s) 105, 143, 229, 464, 479
BfaI CTAG 1 cut(s) 371
BfoI RGCGCY 1 cut(s) 697
BfuAI ACCTGC 1 cut(s) 707
BisI GCNGC 1 cut(s) 471
BlsI GCNGC 1 cut(s) 472
Bme1390I CCNGG 1 cut(s) 547
BmrFI CCNGG 1 cut(s) 547
BpmI CTGGAG 1 cut(s) 613
BpuEI CTTGAG 1 cut(s) 101
BsaI GGTCTC 1 cut(s) 479
BsaJI CCNNGG 1 cut(s) 428
BsaWI WCCGGW 1 cut(s) 604
BsaXI ACNNNNNCTCC 4 cut(s) 634, 664, 665, 695
Bsc4I CCNNNNNNNGG 2 cut(s) 205, 505
Bse1I ACTGG 1 cut(s) 596
Bse3DI GCAATG 1 cut(s) 711
BseBI CCWGG 1 cut(s) 547
BseDI CCNNGG 1 cut(s) 428
BseGI GGATG 2 cut(s) 438, 603
BseLI CCNNNNNNNGG 2 cut(s) 205, 505
BseMI GCAATG 1 cut(s) 711
BseMII CTCAG 1 cut(s) 291
BseNI ACTGG 1 cut(s) 596
BseSI GKGCMC 1 cut(s) 498
BseXI GCAGC 1 cut(s) 457
BsiHKAI GWGCWC 1 cut(s) 33
BsiSI CCGG 1 cut(s) 605
BslI CCNNNNNNNGG 2 cut(s) 205, 505
BsmAI GTCTC 5 cut(s) 105, 143, 229, 464, 479
BsmI GAATGC 1 cut(s) 667
Bso31I GGTCTC 1 cut(s) 479
Bsp1286I GDGCHC 2 cut(s) 33, 498
Bsp143I GATC 4 cut(s) 388, 628, 636, 657
BspCNI CTCAG 1 cut(s) 290
BspMI ACCTGC 1 cut(s) 707
BspPI GGATC 1 cut(s) 652
BspQI GCTCTTC 1 cut(s) 742
BspTNI GGTCTC 1 cut(s) 479
BsrDI GCAATG 1 cut(s) 711
BsrI ACTGG 1 cut(s) 596
BssECI CCNNGG 1 cut(s) 428
BssMI GATC 4 cut(s) 388, 628, 636, 657
BssT1I CCWWGG 1 cut(s) 428
Bst2UI CCWGG 1 cut(s) 547
Bst4CI ACNGT 1 cut(s) 367
Bst6I CTCTTC 2 cut(s) 477, 742
BstDEI CTNAG 1 cut(s) 277
BstEII GGTNACC 1 cut(s) 607
BstF5I GGATG 2 cut(s) 438, 603
BstH2I RGCGCY 1 cut(s) 697
BstHHI GCGC 1 cut(s) 696
BstKTI GATC 4 cut(s) 391, 631, 639, 660
BstMAI GTCTC 5 cut(s) 105, 143, 229, 464, 479
BstMBI GATC 4 cut(s) 388, 628, 636, 657
BstMWI GCNNNNNNNGC 1 cut(s) 574
BstNI CCWGG 1 cut(s) 547
BstPI GGTNACC 1 cut(s) 607
BstSCI CCNGG 1 cut(s) 545
BstSLI GKGCMC 1 cut(s) 498
BstV1I GCAGC 1 cut(s) 457
BstX2I RGATCY 1 cut(s) 657
BstYI RGATCY 1 cut(s) 657
BtsCI GGATG 2 cut(s) 438, 603
BtsIMutI CAGTG 2 cut(s) 271, 363
BveI ACCTGC 1 cut(s) 707
CfoI GCGC 1 cut(s) 696
CseI GACGC 1 cut(s) 65
Csp6I GTAC 1 cut(s) 782
CviAII CATG 3 cut(s) 254, 491, 634
CviQI GTAC 1 cut(s) 782
DdeI CTNAG 1 cut(s) 277
DpnI GATC 4 cut(s) 390, 630, 638, 659
DpnII GATC 4 cut(s) 388, 628, 636, 657
Eam1104I CTCTTC 2 cut(s) 477, 742
EarI CTCTTC 2 cut(s) 477, 742
Ecl136II GAGCTC 1 cut(s) 31
Eco130I CCWWGG 1 cut(s) 428
Eco24I GRGCYC 1 cut(s) 33
Eco31I GGTCTC 1 cut(s) 479
Eco53kI GAGCTC 1 cut(s) 31
Eco91I GGTNACC 1 cut(s) 607
EcoICRI GAGCTC 1 cut(s) 31
EcoO65I GGTNACC 1 cut(s) 607
EcoRII CCWGG 1 cut(s) 545
EcoT14I CCWWGG 1 cut(s) 428
EcoT38I GRGCYC 1 cut(s) 33
ErhI CCWWGG 1 cut(s) 428
FaeI CATG 3 cut(s) 257, 494, 637
FalI AAGNNNNNCTT 4 cut(s) 63, 95, 204, 236
FatI CATG 3 cut(s) 253, 490, 633
FbaI TGATCA 2 cut(s) 628, 636
Fnu4HI GCNGC 1 cut(s) 471
FokI GGATG 2 cut(s) 445, 610
FriOI GRGCYC 1 cut(s) 33
Fsp4HI GCNGC 1 cut(s) 471
FspBI CTAG 1 cut(s) 371
GlaI GCGC 1 cut(s) 695
GluI GCNGC 1 cut(s) 471
GsuI CTGGAG 1 cut(s) 613
HaeII RGCGCY 1 cut(s) 697
HapII CCGG 1 cut(s) 605
HgaI GACGC 1 cut(s) 65
HhaI GCGC 1 cut(s) 696
Hin1II CATG 3 cut(s) 257, 494, 637
Hin6I GCGC 1 cut(s) 694
HinP1I GCGC 1 cut(s) 694
HincII GTYRAC 1 cut(s) 440
HindII GTYRAC 1 cut(s) 440
HinfI GANTC 4 cut(s) 20, 436, 524, 601
HpaII CCGG 1 cut(s) 605
HphI GGTGA 1 cut(s) 731
Hpy166II GTNNAC 1 cut(s) 440
Hpy188I TCNGA 4 cut(s) 280, 303, 673, 730
Hpy188III TCNNGA 5 cut(s) 80, 319, 506, 587, 640
Hpy8I GTNNAC 1 cut(s) 440
HpyAV CCTTC 3 cut(s) 68, 509, 710
HpyCH4III ACNGT 1 cut(s) 367
HpyCH4V TGCA 4 cut(s) 10, 514, 667, 716
HpyF10VI GCNNNNNNNGC 1 cut(s) 574
HpyF3I CTNAG 1 cut(s) 277
Hsp92II CATG 3 cut(s) 257, 494, 637
HspAI GCGC 1 cut(s) 694
Ksp22I TGATCA 2 cut(s) 628, 636
Kzo9I GATC 4 cut(s) 388, 628, 636, 657
LguI GCTCTTC 1 cut(s) 742
LmnI GCTCC 2 cut(s) 36, 565
Lsp1109I GCAGC 1 cut(s) 457
MaeI CTAG 1 cut(s) 371
MaeIII GTNAC 1 cut(s) 607
MalI GATC 4 cut(s) 390, 630, 638, 659
MboI GATC 4 cut(s) 388, 628, 636, 657
MflI RGATCY 1 cut(s) 657
MhlI GDGCHC 2 cut(s) 33, 498
MluCI AATT 2 cut(s) 231, 616
MlyI GAGTC 1 cut(s) 445
MnlI CCTC 5 cut(s) 76, 514, 588, 636, 707
MseI TTAA 1 cut(s) 290
MspI CCGG 1 cut(s) 605
MspR9I CCNGG 1 cut(s) 547
Mva1269I GAATGC 1 cut(s) 667
MvaI CCWGG 1 cut(s) 547
MwoI GCNNNNNNNGC 1 cut(s) 574
NdeII GATC 4 cut(s) 388, 628, 636, 657
NlaIII CATG 3 cut(s) 257, 494, 637
PaqCI CACCTGC 1 cut(s) 707
PciSI GCTCTTC 1 cut(s) 742
PctI GAATGC 1 cut(s) 667
PfeI GAWTC 3 cut(s) 20, 524, 601
PkrI GCNGC 1 cut(s) 472
PleI GAGTC 1 cut(s) 444
PpsI GAGTC 1 cut(s) 444
Psp124BI GAGCTC 1 cut(s) 33
Psp6I CCWGG 1 cut(s) 545
PspEI GGTNACC 1 cut(s) 607
PspGI CCWGG 1 cut(s) 545
PsuI RGATCY 1 cut(s) 657
RsaI GTAC 1 cut(s) 783
RsaNI GTAC 1 cut(s) 782
SacI GAGCTC 1 cut(s) 33
SapI GCTCTTC 1 cut(s) 742
SaqAI TTAA 1 cut(s) 290
SatI GCNGC 1 cut(s) 471
Sau3AI GATC 4 cut(s) 388, 628, 636, 657
SchI GAGTC 1 cut(s) 445
ScrFI CCNGG 1 cut(s) 547
SduI GDGCHC 2 cut(s) 33, 498
SetI ASST 9 cut(s) 33, 79, 143, 201, 376, 407, 570, 721, 737
SmlI CTYRAG 1 cut(s) 80
SmoI CTYRAG 1 cut(s) 80
Sse9I AATT 2 cut(s) 231, 616
SspMI CTAG 1 cut(s) 371
SstI GAGCTC 1 cut(s) 33
StyD4I CCNGG 1 cut(s) 545
StyI CCWWGG 1 cut(s) 428
TaaI ACNGT 1 cut(s) 367
TasI AATT 2 cut(s) 231, 616
TatI WGTACW 1 cut(s) 781
TfiI GAWTC 3 cut(s) 20, 524, 601
Tru1I TTAA 1 cut(s) 290
Tru9I TTAA 1 cut(s) 290
TscAI CASTG 2 cut(s) 271, 370
TseI GCWGC 1 cut(s) 470
TspDTI ATGAA 4 cut(s) 231, 392, 609, 614
TspRI CASTG 2 cut(s) 271, 370
XapI RAATTY 1 cut(s) 616
XspI CTAG 1 cut(s) 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.