Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011724

Physical Location & Seq

Genomic Coordinates Forward (+)

17989595 .. 17991525

Gene Structure 1931 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48067

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGCTCTGCAAGAACAAGATTCCCAAGAGCTCCAAAACCCACCAATGCTTTTAGACGCTTTGTTCTGTGAAGAAGGTCTTGAGGGAGAAGAAGAAGATTTGGGAGACAATGGTGTTGAAGAACAGAGCGAGAGCTGTGTTGAGACTTTGGAAAAACAGTCTTCCCCTTTGGTTATGTCAAAAGGCGACCTGTTTTGGGAAGAAGATGAACTTGTCTCTCTAATTTCAAAAGAGAAACAAACCCATGTCAGTTTCAGTGGTTCAAACTCAGATGGGTCTTTAATGGTGGCTCGGAGAGAAGCATTAGTCTGGATTTTGAGTGTGAAATCACACTATGGGTTGTCTTGTTTGACCACTGTTCTAGCTATGAACTACTTTGATCGGTTCAGTTCAAGCTCGGTGTTTCAAAAGGACAAGCCTTGGATGAGTCAACTAACTGCTGTGGCTTGTCTCTCTCTGGCTGCCAAAGTGGAAGAGACCCATGTGCCCCTTCTTCTGGATTTGCAAGTGGAGGAATCAAAGTATGTATTTGAAGCCAGGACTATTCAAAGAATGGAGCTTTTGGTGCTTTCAACTCTTGACTGGAGGATGAATCCGGTAACCCCAAATTCATTCTTTGATCACATGATCAGGAGGCTTGGTTTGAAGATCCATTTGCATTCGGAGTTTCTGTGGAGATGTGAGCGCCTCCTTCTCTCTGTCATTGCAGATTCCAGATTTCTGGTCTTTCTGCCTTCTATAGTAGCTGCTGCAGTAATGCTGTATGTTATTAATGAAATTGAAACATTCAATCCTGTCGATTATCAGAATCAGGTTTTGAGTGTACTCAAAGTCAGCCAGGGCATAGTCAGTGAATGCTACAAGCTCATCCTGGTACTATCAGCCAGCACTGTGCAAAACCAAGGGCATAAACGCAAGCATTCATTCATACCTAGCAGCCCAAGTGGAGTTATAGATGTATGTTTCAGCTCTGATACCTCAAATGATTCATGGGCTGTGGCTTCACCGCTCTCATCTTTGCCAGATCCTCGATTTAAAAGGAGCAGACTTCAGGACCAGCAGATGCGGCTACCCTCGTTAAATCGTGTATCTGTTGATGTGCTTAGCAGCTCTCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009987 GO:0010154 GO:0010374 GO:0010440 GO:0010444 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0090558 GO:0090627

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

372

Amino Acids

41.92

Weight (kDa)

4.98

Isoelectric Point (pI)

61.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	94 - 198	1.3e-25	Cyclin, N-terminal domain
Cyclin_C	PF02984	200 - 308	1.1e-16	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011724)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50070
fragaria_vesca	FvH4_1g16680
malus_domestica	MD02G1178200.v1.1 MD15G1288100.v1.1
prunus_persica	Prupe.6G229700_v2.0.a1 Prupe.6G229700_v2.0.a1 Prupe.6G229700_v2.0.a1
pyrus_communis	pycom02g14430 pycom15g25160
rosa_chinensis	RchiOBHm_Chr2g0106601
rosa_laevigata	RLG00000017519
rosa_multiflora	Rmu_sc0006221.1_g000010
rosa_roxburghii	Rroxscaffold_2G00136990
rosa_rugosa	Rorug02G0136600
rosa_samantha	Rh2AG187800 Rh2BG198800 Rh2CG192900 Rh2DG194000
rosa_wichuraiana	Rw2G014740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1009
AciI	CCGC	2 cut(s)	1007, 1066
AclWI	GGATC	2 cut(s)	643, 1019
AcsI	RAATTY	1 cut(s)	607
AcuI	CTGAAG	1 cut(s)	1034
AfaI	GTAC	2 cut(s)	825, 876
AfiI	CCNNNNNNNGG	2 cut(s)	196, 496
AjnI	CCWGG	3 cut(s)	536, 837, 870
AluBI	AGCT	9 cut(s)	31, 135, 365, 396, 559, 746, 865, 969, 1110
AluI	AGCT	9 cut(s)	31, 135, 365, 396, 559, 746, 865, 969, 1110
Alw21I	GWGCWC	1 cut(s)	33
Alw26I	GTCTC	5 cut(s)	99, 137, 220, 455, 470
AlwI	GGATC	2 cut(s)	643, 1019
ApeKI	GCWGC	5 cut(s)	461, 746, 749, 936, 1107
ApoI	RAATTY	1 cut(s)	607
AseI	ATTAAT	1 cut(s)	771
AspLEI	GCGC	1 cut(s)	687
AspS9I	GGNCC	1 cut(s)	1054
AsuHPI	GGTGA	1 cut(s)	996
AvaII	GGWCC	1 cut(s)	1054
BaeGI	GKGCMC	1 cut(s)	489
BanII	GRGCYC	1 cut(s)	33
BbsI	GAAGAC	1 cut(s)	153
Bbv12I	GWGCWC	1 cut(s)	33
BbvI	GCAGC	4 cut(s)	448, 733, 736, 948
BccI	CCATC	1 cut(s)	266
BciT130I	CCWGG	3 cut(s)	538, 839, 872
BclI	TGATCA	2 cut(s)	619, 627
BcoDI	GTCTC	5 cut(s)	99, 137, 220, 455, 470
BfaI	CTAG	2 cut(s)	362, 933
BfmI	CTRYAG	2 cut(s)	738, 750
BfoI	RGCGCY	1 cut(s)	688
BisI	GCNGC	6 cut(s)	462, 747, 750, 937, 1067, 1108
BlpI	GCTNAGC	1 cut(s)	1103
BlsI	GCNGC	6 cut(s)	463, 748, 751, 938, 1068, 1109
Bme1390I	CCNGG	3 cut(s)	538, 839, 872
Bme18I	GGWCC	1 cut(s)	1054
BmgT120I	GGNCC	1 cut(s)	1054
BmrFI	CCNGG	3 cut(s)	538, 839, 872
BmsI	GCATC	1 cut(s)	1053
BpiI	GAAGAC	1 cut(s)	153
BpmI	CTGGAG	1 cut(s)	604
Bpu1102I	GCTNAGC	1 cut(s)	1103
BpuEI	CTTGAG	1 cut(s)	101
BsaI	GGTCTC	1 cut(s)	470
BsaJI	CCNNGG	3 cut(s)	419, 838, 901
BsaWI	WCCGGW	1 cut(s)	595
BsaXI	ACNNNNNCTCC	4 cut(s)	625, 655, 656, 686
Bsc4I	CCNNNNNNNGG	2 cut(s)	196, 496
Bse1I	ACTGG	1 cut(s)	587
Bse3DI	GCAATG	1 cut(s)	702
BseBI	CCWGG	3 cut(s)	538, 839, 872
BseDI	CCNNGG	3 cut(s)	419, 838, 901
BseGI	GGATG	3 cut(s)	429, 594, 867
BseLI	CCNNNNNNNGG	2 cut(s)	196, 496
BseMI	GCAATG	1 cut(s)	702
BseMII	CTCAG	1 cut(s)	282
BseNI	ACTGG	1 cut(s)	587
BseSI	GKGCMC	1 cut(s)	489
BseXI	GCAGC	4 cut(s)	448, 733, 736, 948
BsiHKAI	GWGCWC	1 cut(s)	33
BsiSI	CCGG	1 cut(s)	596
BslI	CCNNNNNNNGG	2 cut(s)	196, 496
BsmAI	GTCTC	5 cut(s)	99, 137, 220, 455, 470
BsmI	GAATGC	3 cut(s)	658, 860, 919
Bso31I	GGTCTC	1 cut(s)	470
Bsp1286I	GDGCHC	2 cut(s)	33, 489
Bsp143I	GATC	5 cut(s)	379, 619, 627, 648, 1024
Bsp1720I	GCTNAGC	1 cut(s)	1103
BspACI	CCGC	2 cut(s)	1007, 1066
BspCNI	CTCAG	1 cut(s)	281
BspMAI	CTGCAG	1 cut(s)	754
BspPI	GGATC	2 cut(s)	643, 1019
BspTNI	GGTCTC	1 cut(s)	470
BsrBI	CCGCTC	1 cut(s)	1009
BsrDI	GCAATG	1 cut(s)	702
BsrI	ACTGG	1 cut(s)	587
BssECI	CCNNGG	3 cut(s)	419, 838, 901
BssMI	GATC	5 cut(s)	379, 619, 627, 648, 1024
BssT1I	CCWWGG	2 cut(s)	419, 901
Bst2UI	CCWGG	3 cut(s)	538, 839, 872
Bst4CI	ACNGT	3 cut(s)	159, 358, 892
Bst6I	CTCTTC	1 cut(s)	468
BstC8I	GCNNGC	2 cut(s)	886, 917
BstDEI	CTNAG	2 cut(s)	268, 1103
BstEII	GGTNACC	1 cut(s)	598
BstF5I	GGATG	3 cut(s)	429, 594, 867
BstH2I	RGCGCY	1 cut(s)	688
BstHHI	GCGC	1 cut(s)	687
BstKTI	GATC	5 cut(s)	382, 622, 630, 651, 1027
BstMAI	GTCTC	5 cut(s)	99, 137, 220, 455, 470
BstMBI	GATC	5 cut(s)	379, 619, 627, 648, 1024
BstMWI	GCNNNNNNNGC	2 cut(s)	565, 1066
BstNI	CCWGG	3 cut(s)	538, 839, 872
BstPI	GGTNACC	1 cut(s)	598
BstSCI	CCNGG	3 cut(s)	536, 837, 870
BstSFI	CTRYAG	2 cut(s)	738, 750
BstSLI	GKGCMC	1 cut(s)	489
BstV1I	GCAGC	4 cut(s)	448, 733, 736, 948
BstV2I	GAAGAC	1 cut(s)	153
BstX2I	RGATCY	2 cut(s)	648, 1024
BstXI	CCANNNNNNTGG	1 cut(s)	721
BstYI	RGATCY	2 cut(s)	648, 1024
BtsCI	GGATG	3 cut(s)	429, 594, 867
BtsIMutI	CAGTG	4 cut(s)	262, 354, 856, 888
Cac8I	GCNNGC	2 cut(s)	886, 917
CfoI	GCGC	1 cut(s)	687
Cfr13I	GGNCC	1 cut(s)	1054
CseI	GACGC	1 cut(s)	65
Csp6I	GTAC	2 cut(s)	824, 875
CviAII	CATG	4 cut(s)	245, 482, 625, 990
CviQI	GTAC	2 cut(s)	824, 875
DdeI	CTNAG	2 cut(s)	268, 1103
DpnI	GATC	5 cut(s)	381, 621, 629, 650, 1026
DpnII	GATC	5 cut(s)	379, 619, 627, 648, 1024
DraI	TTTAAA	1 cut(s)	1036
Eam1104I	CTCTTC	1 cut(s)	468
EarI	CTCTTC	1 cut(s)	468
Ecl136II	GAGCTC	1 cut(s)	31
Eco130I	CCWWGG	2 cut(s)	419, 901
Eco24I	GRGCYC	1 cut(s)	33
Eco31I	GGTCTC	1 cut(s)	470
Eco47I	GGWCC	1 cut(s)	1054
Eco53kI	GAGCTC	1 cut(s)	31
Eco57I	CTGAAG	1 cut(s)	1034
Eco91I	GGTNACC	1 cut(s)	598
EcoICRI	GAGCTC	1 cut(s)	31
EcoO65I	GGTNACC	1 cut(s)	598
EcoRII	CCWGG	3 cut(s)	536, 837, 870
EcoT14I	CCWWGG	2 cut(s)	419, 901
EcoT38I	GRGCYC	1 cut(s)	33
ErhI	CCWWGG	2 cut(s)	419, 901
FaeI	CATG	4 cut(s)	248, 485, 628, 993
FalI	AAGNNNNNCTT	4 cut(s)	63, 95, 195, 227
FatI	CATG	4 cut(s)	244, 481, 624, 989
FbaI	TGATCA	2 cut(s)	619, 627
Fnu4HI	GCNGC	6 cut(s)	462, 747, 750, 937, 1067, 1108
FokI	GGATG	3 cut(s)	436, 601, 854
FriOI	GRGCYC	1 cut(s)	33
Fsp4HI	GCNGC	6 cut(s)	462, 747, 750, 937, 1067, 1108
FspBI	CTAG	2 cut(s)	362, 933
GlaI	GCGC	1 cut(s)	686
GluI	GCNGC	6 cut(s)	462, 747, 750, 937, 1067, 1108
GsuI	CTGGAG	1 cut(s)	604
HaeII	RGCGCY	1 cut(s)	688
HapII	CCGG	1 cut(s)	596
HgaI	GACGC	1 cut(s)	65
HhaI	GCGC	1 cut(s)	687
Hin1II	CATG	4 cut(s)	248, 485, 628, 993
Hin6I	GCGC	1 cut(s)	685
HinP1I	GCGC	1 cut(s)	685
HincII	GTYRAC	1 cut(s)	431
HindII	GTYRAC	1 cut(s)	431
HinfI	GANTC	7 cut(s)	20, 427, 515, 592, 710, 808, 986
HpaII	CCGG	1 cut(s)	596
HphI	GGTGA	1 cut(s)	996
Hpy166II	GTNNAC	2 cut(s)	431, 824
Hpy188I	TCNGA	5 cut(s)	271, 294, 664, 807, 973
Hpy188III	TCNNGA	7 cut(s)	80, 310, 497, 578, 631, 714, 1052
Hpy8I	GTNNAC	2 cut(s)	431, 824
HpyAV	CCTTC	4 cut(s)	68, 500, 701, 744
HpyCH4III	ACNGT	3 cut(s)	159, 358, 892
HpyCH4V	TGCA	6 cut(s)	10, 505, 658, 707, 752, 895
HpyF10VI	GCNNNNNNNGC	2 cut(s)	565, 1066
HpyF3I	CTNAG	2 cut(s)	268, 1103
Hsp92II	CATG	4 cut(s)	248, 485, 628, 993
HspAI	GCGC	1 cut(s)	685
Ksp22I	TGATCA	2 cut(s)	619, 627
Kzo9I	GATC	5 cut(s)	379, 619, 627, 648, 1024
LmnI	GCTCC	3 cut(s)	36, 556, 1041
Lsp1109I	GCAGC	4 cut(s)	448, 733, 736, 948
LweI	GCATC	1 cut(s)	1053
MaeI	CTAG	2 cut(s)	362, 933
MaeIII	GTNAC	1 cut(s)	598
MalI	GATC	5 cut(s)	381, 621, 629, 650, 1026
MbiI	CCGCTC	1 cut(s)	1009
MboI	GATC	5 cut(s)	379, 619, 627, 648, 1024
MflI	RGATCY	2 cut(s)	648, 1024
MhlI	GDGCHC	2 cut(s)	33, 489
MluCI	AATT	3 cut(s)	222, 607, 777
MlyI	GAGTC	1 cut(s)	436
MnlI	CCTC	8 cut(s)	76, 505, 579, 627, 698, 988, 1038, 1084
MseI	TTAA	4 cut(s)	281, 771, 1035, 1079
MspI	CCGG	1 cut(s)	596
MspR9I	CCNGG	3 cut(s)	538, 839, 872
Mva1269I	GAATGC	3 cut(s)	658, 860, 919
MvaI	CCWGG	3 cut(s)	538, 839, 872
MwoI	GCNNNNNNNGC	2 cut(s)	565, 1066
NdeII	GATC	5 cut(s)	379, 619, 627, 648, 1024
NlaIII	CATG	4 cut(s)	248, 485, 628, 993
PctI	GAATGC	3 cut(s)	658, 860, 919
PfeI	GAWTC	6 cut(s)	20, 515, 592, 710, 808, 986
PkrI	GCNGC	6 cut(s)	463, 748, 751, 938, 1068, 1109
PleI	GAGTC	1 cut(s)	435
PpsI	GAGTC	1 cut(s)	435
PshBI	ATTAAT	1 cut(s)	771
Psp124BI	GAGCTC	1 cut(s)	33
Psp6I	CCWGG	3 cut(s)	536, 837, 870
PspEI	GGTNACC	1 cut(s)	598
PspGI	CCWGG	3 cut(s)	536, 837, 870
PspPI	GGNCC	1 cut(s)	1054
PstI	CTGCAG	1 cut(s)	754
PsuI	RGATCY	2 cut(s)	648, 1024
RsaI	GTAC	2 cut(s)	825, 876
RsaNI	GTAC	2 cut(s)	824, 875
SacI	GAGCTC	1 cut(s)	33
SaqAI	TTAA	4 cut(s)	281, 771, 1035, 1079
SatI	GCNGC	6 cut(s)	462, 747, 750, 937, 1067, 1108
Sau3AI	GATC	5 cut(s)	379, 619, 627, 648, 1024
Sau96I	GGNCC	1 cut(s)	1054
SchI	GAGTC	1 cut(s)	436
ScrFI	CCNGG	3 cut(s)	538, 839, 872
SduI	GDGCHC	2 cut(s)	33, 489
SfaNI	GCATC	1 cut(s)	1053
SfcI	CTRYAG	2 cut(s)	738, 750
SinI	GGWCC	1 cut(s)	1054
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
Sse9I	AATT	3 cut(s)	222, 607, 777
SsiI	CCGC	2 cut(s)	1007, 1066
SspMI	CTAG	2 cut(s)	362, 933
SstI	GAGCTC	1 cut(s)	33
StyD4I	CCNGG	3 cut(s)	536, 837, 870
StyI	CCWWGG	2 cut(s)	419, 901
TaaI	ACNGT	3 cut(s)	159, 358, 892
TaqI	TCGA	2 cut(s)	798, 1030
TasI	AATT	3 cut(s)	222, 607, 777
TatI	WGTACW	1 cut(s)	823
TauI	GCSGC	1 cut(s)	1069
TfiI	GAWTC	6 cut(s)	20, 515, 592, 710, 808, 986
Tru1I	TTAA	4 cut(s)	281, 771, 1035, 1079
Tru9I	TTAA	4 cut(s)	281, 771, 1035, 1079
TscAI	CASTG	4 cut(s)	262, 361, 856, 895
TseI	GCWGC	5 cut(s)	461, 746, 749, 936, 1107
TspDTI	ATGAA	8 cut(s)	222, 383, 600, 605, 789, 912, 916, 978
TspRI	CASTG	4 cut(s)	262, 361, 856, 895
VpaK11BI	GGWCC	1 cut(s)	1054
VspI	ATTAAT	1 cut(s)	771
XapI	RAATTY	1 cut(s)	607
XspI	CTAG	2 cut(s)	362, 933

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.