Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0011724

Physical Location & Seq

Genomic Coordinates Forward (+)

15747820 .. 15749707

Gene Structure 1888 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1178200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGCTCTGCAAGAAGAACCCCAAGAGCTCCAAAACCCTCCAATGGCGTTCGATCCTTTATTATTCTGCGAAGAAGGATTTGAGGAAGATTTGGGAGACAATGGTAGTGAGGAGGAGAGCGAGAACTGTGATGGGTTTTCAAAAAAGCAATCATCTTTCCCTTTGATTTTCCTGGAAAGTGATATGTTCTGGGAAAATGATGAACTTTCCTCTCTAATCTCCAAAGAGGAACAAACCCATGTGCGTTTCAGTGGAGAAATCTCAGATGGGTCTTTGATGGCGGCTCGGAAGGAGGTGGTTGAGTGGATTCTGAGTGTAAAGGCACACTATGGCTTCTCCTCTTTGACCGCCATTCTGGCTGTGAACTACTTTGATAGGTTCATTGCCAGCCGGCCGTTTCAGAGGGACAAGCCGTGGATGAGTCAGCTCGCCGCCGTCGCCTGCGTCTCGTTGGCCGCCAAAGTCGAGGAGACCCATGTGCCCCTTCTCTTAGATTTGCAAGTGGAGGAAACAAAGTATGTTTTCGAAGCGAAGACCATTCAAAGAATGGAGCTTTTGGTGCTATCGACTCTCGGGTGGCGGATGAATCCAGTGACCCCAAATTCATACTTTGATCACATTATCAGGAGGTTTGGTTTGAAGAGCCACCTGCATTGGGAGTTTCTGTGGAGGTGTGAGTGCCTACTTCTATCAGTCATAGCGGATTTGAGATTTACATGTTATTTGCCTTCCGTATTAGCCACTGCGACAATGCTGTATGTAATTGATGAGATTGAGGCATTTAATCCTGTGGAATACCAAAATCAGCTTATGAATGTACTTAAAGTCAGTAAGGACAGGGTAAATGAGTGCTACAAGCTCATCCAGGAACTAGCAGGCAGCGTCGAAAACCAAGGCCACAAACGCAAGCATTTATCGGTACCCAGCAGCCCAAATGGAGTTATTGATGCATCTTTCAGCTGTGATACGTCAAGTGATTCGTGGGCTGTAGCATCACCGGATCCTCGATTTAAAAGGAGCAGACTGGAGGACCAGCAGATGAGGTTGCCCTCTTTAAATCGTGCGTCTGTGGACGTGCTGAGCAGCTCTCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009987 GO:0010154 GO:0010374 GO:0010440 GO:0010444 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0090558 GO:0090627

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

365

Amino Acids

41.51

Weight (kDa)

4.89

Isoelectric Point (pI)

58.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	93 - 196	1.2e-26	Cyclin, N-terminal domain
Cyclin_C	PF02984	198 - 303	3.1e-18	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011724)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50070
fragaria_vesca	FvH4_1g16680
malus_domestica	MD02G1178200.v1.1 MD15G1288100.v1.1
prunus_persica	Prupe.6G229700_v2.0.a1 Prupe.6G229700_v2.0.a1 Prupe.6G229700_v2.0.a1
pyrus_communis	pycom02g14430 pycom15g25160
rosa_chinensis	RchiOBHm_Chr2g0106601
rosa_laevigata	RLG00000017519
rosa_multiflora	Rmu_sc0006221.1_g000010
rosa_roxburghii	Rroxscaffold_2G00136990
rosa_rugosa	Rorug02G0136600
rosa_samantha	Rh2AG187800 Rh2BG198800 Rh2CG192900 Rh2DG194000
rosa_wichuraiana	Rw2G014740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	657
Acc36I	ACCTGC	1 cut(s)	657
Acc65I	GGTACC	1 cut(s)	919
AccB1I	GGYRCC	1 cut(s)	919
AciI	CCGC	6 cut(s)	281, 348, 432, 456, 580, 701
AclWI	GGATC	3 cut(s)	47, 995, 1008
AcoI	YGGCCR	2 cut(s)	392, 453
AcsI	RAATTY	1 cut(s)	601
AfaI	GTAC	2 cut(s)	819, 921
AfiI	CCNNNNNNNGG	2 cut(s)	43, 655
AflIII	ACRYGT	1 cut(s)	716
AgsI	TTSAA	3 cut(s)	141, 542, 640
AjiI	CACGTC	1 cut(s)	1075
AjnI	CCWGG	2 cut(s)	171, 864
AluBI	AGCT	7 cut(s)	28, 427, 553, 808, 859, 960, 1086
AluI	AGCT	7 cut(s)	28, 427, 553, 808, 859, 960, 1086
Alw21I	GWGCWC	1 cut(s)	30
Alw26I	GTCTC	3 cut(s)	90, 451, 464
AlwI	GGATC	3 cut(s)	47, 995, 1008
Ama87I	CYCGRG	1 cut(s)	572
AoxI	GGCC	3 cut(s)	392, 453, 895
ApeKI	GCWGC	3 cut(s)	879, 927, 1083
ApoI	RAATTY	1 cut(s)	601
Asp718I	GGTACC	1 cut(s)	919
AspS9I	GGNCC	1 cut(s)	1030
AsuHPI	GGTGA	1 cut(s)	987
AsuII	TTCGAA	1 cut(s)	525
AvaI	CYCGRG	1 cut(s)	572
AvaII	GGWCC	1 cut(s)	1030
BaeGI	GKGCMC	1 cut(s)	483
BamHI	GGATCC	1 cut(s)	1000
BanI	GGYRCC	1 cut(s)	919
BanII	GRGCYC	1 cut(s)	30
BbsI	GAAGAC	1 cut(s)	539
Bbv12I	GWGCWC	1 cut(s)	30
BbvI	GCAGC	2 cut(s)	891, 939
BccI	CCATC	3 cut(s)	125, 260, 271
BceAI	ACGGC	3 cut(s)	379, 397, 419
BciT130I	CCWGG	2 cut(s)	173, 866
BclI	TGATCA	1 cut(s)	613
BcoDI	GTCTC	3 cut(s)	90, 451, 464
BfaI	CTAG	1 cut(s)	872
BfmI	CTRYAG	1 cut(s)	987
BfuAI	ACCTGC	1 cut(s)	657
BglI	GCCNNNNNGGC	1 cut(s)	356
BisI	GCNGC	6 cut(s)	282, 432, 456, 880, 928, 1084
BlpI	GCTNAGC	1 cut(s)	1079
BlsI	GCNGC	6 cut(s)	283, 433, 457, 881, 929, 1085
Bme1390I	CCNGG	2 cut(s)	173, 866
Bme18I	GGWCC	1 cut(s)	1030
BmeT110I	CYCGRG	1 cut(s)	572
BmgBI	CACGTC	1 cut(s)	1075
BmgT120I	GGNCC	1 cut(s)	1030
BmiI	GGNNCC	2 cut(s)	921, 1002
BmrFI	CCNGG	2 cut(s)	173, 866
BmsI	GCATC	3 cut(s)	937, 959, 1001
BpiI	GAAGAC	1 cut(s)	539
BplI	GAGNNNNNCTC	1 cut(s)	1072
BpmI	CTGGAG	1 cut(s)	1046
Bpu1102I	GCTNAGC	1 cut(s)	1079
Bpu14I	TTCGAA	1 cut(s)	525
BsaI	GGTCTC	1 cut(s)	464
BsaJI	CCNNGG	2 cut(s)	413, 892
BsaWI	WCCGGW	1 cut(s)	997
BsaXI	ACNNNNNCTCC	4 cut(s)	619, 649, 650, 680
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 655
Bse118I	RCCGGY	1 cut(s)	390
Bse1I	ACTGG	2 cut(s)	590, 1029
Bse3DI	GCAATG	1 cut(s)	381
BseBI	CCWGG	2 cut(s)	173, 866
BseDI	CCNNGG	2 cut(s)	413, 892
BseGI	GGATG	3 cut(s)	423, 588, 861
BseLI	CCNNNNNNNGG	2 cut(s)	43, 655
BseMI	GCAATG	1 cut(s)	381
BseMII	CTCAG	3 cut(s)	276, 302, 1070
BseNI	ACTGG	2 cut(s)	590, 1029
BseRI	GAGGAG	4 cut(s)	125, 128, 328, 482
BseSI	GKGCMC	1 cut(s)	483
BseX3I	CGGCCG	1 cut(s)	392
BseXI	GCAGC	2 cut(s)	891, 939
BseYI	CCCAGC	1 cut(s)	923
Bsh1285I	CGRYCG	1 cut(s)	395
BshFI	GGCC	3 cut(s)	394, 455, 897
BshNI	GGYRCC	1 cut(s)	919
BsiEI	CGRYCG	1 cut(s)	395
BsiHKAI	GWGCWC	1 cut(s)	30
BsiHKCI	CYCGRG	1 cut(s)	572
BsiSI	CCGG	2 cut(s)	391, 998
BslFI	GGGAC	1 cut(s)	419
BslI	CCNNNNNNNGG	2 cut(s)	43, 655
BsmAI	GTCTC	3 cut(s)	90, 451, 464
BsmBI	CGTCTC	1 cut(s)	451
BsmFI	GGGAC	1 cut(s)	419
BsnI	GGCC	3 cut(s)	394, 455, 897
Bso31I	GGTCTC	1 cut(s)	464
BsoBI	CYCGRG	1 cut(s)	572
Bsp119I	TTCGAA	1 cut(s)	525
Bsp1286I	GDGCHC	2 cut(s)	30, 483
Bsp143I	GATC	3 cut(s)	52, 613, 1000
Bsp1720I	GCTNAGC	1 cut(s)	1079
BspACI	CCGC	6 cut(s)	281, 348, 432, 456, 580, 701
BspANI	GGCC	3 cut(s)	394, 455, 897
BspCNI	CTCAG	3 cut(s)	275, 303, 1071
BspLI	GGNNCC	2 cut(s)	921, 1002
BspMI	ACCTGC	1 cut(s)	657
BspPI	GGATC	3 cut(s)	47, 995, 1008
BspQI	GCTCTTC	1 cut(s)	635
BspT104I	TTCGAA	1 cut(s)	525
BspT107I	GGYRCC	1 cut(s)	919
BspTNI	GGTCTC	1 cut(s)	464
BsrDI	GCAATG	1 cut(s)	381
BsrFI	RCCGGY	1 cut(s)	390
BsrI	ACTGG	2 cut(s)	590, 1029
BssAI	RCCGGY	1 cut(s)	390
BssECI	CCNNGG	2 cut(s)	413, 892
BssMI	GATC	3 cut(s)	52, 613, 1000
BssT1I	CCWWGG	1 cut(s)	892
Bst2UI	CCWGG	2 cut(s)	173, 866
Bst4CI	ACNGT	1 cut(s)	128
Bst6I	CTCTTC	1 cut(s)	635
BstBI	TTCGAA	1 cut(s)	525
BstC8I	GCNNGC	6 cut(s)	388, 392, 429, 442, 877, 908
BstDEI	CTNAG	4 cut(s)	262, 311, 490, 1079
BstDSI	CCRYGG	1 cut(s)	413
BstF5I	GGATG	3 cut(s)	423, 588, 861
BstKTI	GATC	3 cut(s)	55, 616, 1003
BstMAI	GTCTC	3 cut(s)	90, 451, 464
BstMBI	GATC	3 cut(s)	52, 613, 1000
BstMCI	CGRYCG	1 cut(s)	395
BstMWI	GCNNNNNNNGC	4 cut(s)	356, 437, 559, 903
BstNI	CCWGG	2 cut(s)	173, 866
BstNSI	RCATGY	1 cut(s)	720
BstSCI	CCNGG	2 cut(s)	171, 864
BstSFI	CTRYAG	1 cut(s)	987
BstSLI	GKGCMC	1 cut(s)	483
BstV1I	GCAGC	2 cut(s)	891, 939
BstV2I	GAAGAC	1 cut(s)	539
BstX2I	RGATCY	1 cut(s)	1000
BstYI	RGATCY	1 cut(s)	1000
BstZI	CGGCCG	1 cut(s)	392
BsuRI	GGCC	3 cut(s)	394, 455, 897
BtgI	CCRYGG	1 cut(s)	413
BtrI	CACGTC	1 cut(s)	1075
BtsCI	GGATG	3 cut(s)	423, 588, 861
BtsI	GCAGTG	1 cut(s)	741
BtsIMutI	CAGTG	3 cut(s)	256, 597, 741
BveI	ACCTGC	1 cut(s)	657
Cac8I	GCNNGC	6 cut(s)	388, 392, 429, 442, 877, 908
Cfr10I	RCCGGY	1 cut(s)	390
Cfr13I	GGNCC	1 cut(s)	1030
CseI	GACGC	3 cut(s)	433, 871, 1053
Csp6I	GTAC	2 cut(s)	818, 920
CspCI	CAANNNNNGTGG	2 cut(s)	635, 670
CviAII	CATG	3 cut(s)	239, 476, 717
CviQI	GTAC	2 cut(s)	818, 920
DdeI	CTNAG	4 cut(s)	262, 311, 490, 1079
DpnI	GATC	3 cut(s)	54, 615, 1002
DpnII	GATC	3 cut(s)	52, 613, 1000
DraI	TTTAAA	2 cut(s)	1012, 1056
EaeI	YGGCCR	2 cut(s)	392, 453
EagI	CGGCCG	1 cut(s)	392
Eam1104I	CTCTTC	1 cut(s)	635
EarI	CTCTTC	1 cut(s)	635
EciI	GGCGGA	1 cut(s)	595
Ecl136II	GAGCTC	1 cut(s)	28
EclXI	CGGCCG	1 cut(s)	392
Eco130I	CCWWGG	1 cut(s)	892
Eco24I	GRGCYC	1 cut(s)	30
Eco31I	GGTCTC	1 cut(s)	464
Eco47I	GGWCC	1 cut(s)	1030
Eco52I	CGGCCG	1 cut(s)	392
Eco53kI	GAGCTC	1 cut(s)	28
Eco88I	CYCGRG	1 cut(s)	572
EcoICRI	GAGCTC	1 cut(s)	28
EcoRII	CCWGG	2 cut(s)	171, 864
EcoT14I	CCWWGG	1 cut(s)	892
EcoT22I	ATGCAT	1 cut(s)	952
EcoT38I	GRGCYC	1 cut(s)	30
ErhI	CCWWGG	1 cut(s)	892
Esp3I	CGTCTC	1 cut(s)	451
FaeI	CATG	3 cut(s)	242, 479, 720
FaqI	GGGAC	1 cut(s)	419
FatI	CATG	3 cut(s)	238, 475, 716
FbaI	TGATCA	1 cut(s)	613
Fnu4HI	GCNGC	6 cut(s)	282, 432, 456, 880, 928, 1084
FokI	GGATG	3 cut(s)	430, 595, 848
FriOI	GRGCYC	1 cut(s)	30
Fsp4HI	GCNGC	6 cut(s)	282, 432, 456, 880, 928, 1084
FspBI	CTAG	1 cut(s)	872
GluI	GCNGC	6 cut(s)	282, 432, 456, 880, 928, 1084
GsaI	CCCAGC	1 cut(s)	927
GsuI	CTGGAG	1 cut(s)	1046
HaeIII	GGCC	3 cut(s)	394, 455, 897
HapII	CCGG	2 cut(s)	391, 998
HgaI	GACGC	3 cut(s)	433, 871, 1053
Hin1II	CATG	3 cut(s)	242, 479, 720
HinfI	GANTC	5 cut(s)	307, 421, 568, 586, 977
HpaII	CCGG	2 cut(s)	391, 998
HphI	GGTGA	1 cut(s)	987
Hpy166II	GTNNAC	2 cut(s)	364, 1072
Hpy188I	TCNGA	4 cut(s)	265, 288, 312, 402
Hpy188III	TCNNGA	1 cut(s)	625
Hpy8I	GTNNAC	2 cut(s)	364, 1072
Hpy99I	CGWCG	2 cut(s)	440, 887
HpyAV	CCTTC	4 cut(s)	68, 283, 494, 738
HpyCH4III	ACNGT	1 cut(s)	128
HpyCH4IV	ACGT	2 cut(s)	968, 1074
HpyCH4V	TGCA	4 cut(s)	10, 499, 652, 950
HpyF10VI	GCNNNNNNNGC	4 cut(s)	356, 437, 559, 903
HpyF3I	CTNAG	4 cut(s)	262, 311, 490, 1079
HpySE526I	ACGT	2 cut(s)	968, 1074
Hsp92II	CATG	3 cut(s)	242, 479, 720
KpnI	GGTACC	1 cut(s)	923
KroI	GCCGGC	1 cut(s)	390
KroNI	GCCGGC	1 cut(s)	392
Ksp22I	TGATCA	1 cut(s)	613
Kzo9I	GATC	3 cut(s)	52, 613, 1000
LguI	GCTCTTC	1 cut(s)	635
LmnI	GCTCC	3 cut(s)	33, 550, 1017
Lsp1109I	GCAGC	2 cut(s)	891, 939
LweI	GCATC	3 cut(s)	937, 959, 1001
MaeI	CTAG	1 cut(s)	872
MaeII	ACGT	2 cut(s)	968, 1074
MaeIII	GTNAC	1 cut(s)	592
MalI	GATC	3 cut(s)	54, 615, 1002
MboI	GATC	3 cut(s)	52, 613, 1000
MboII	GAAGA	5 cut(s)	26, 83, 98, 544, 652
MflI	RGATCY	1 cut(s)	1000
MhlI	GDGCHC	2 cut(s)	30, 483
MluCI	AATT	2 cut(s)	601, 762
MlyI	GAGTC	2 cut(s)	430, 562
Mph1103I	ATGCAT	1 cut(s)	952
MroNI	GCCGGC	1 cut(s)	390
MseI	TTAA	4 cut(s)	783, 822, 1011, 1055
MspA1I	CMGCKG	1 cut(s)	960
MspI	CCGG	2 cut(s)	391, 998
MspR9I	CCNGG	2 cut(s)	173, 866
MvaI	CCWGG	2 cut(s)	173, 866
MwoI	GCNNNNNNNGC	4 cut(s)	356, 437, 559, 903
NaeI	GCCGGC	1 cut(s)	392
NdeII	GATC	3 cut(s)	52, 613, 1000
NgoMIV	GCCGGC	1 cut(s)	390
NlaIII	CATG	3 cut(s)	242, 479, 720
NlaIV	GGNNCC	2 cut(s)	921, 1002
NmuCI	GTSAC	1 cut(s)	592
NsiI	ATGCAT	1 cut(s)	952
NspI	RCATGY	1 cut(s)	720
NspV	TTCGAA	1 cut(s)	525
PaqCI	CACCTGC	1 cut(s)	657
PciI	ACATGT	1 cut(s)	716
PciSI	GCTCTTC	1 cut(s)	635
PdiI	GCCGGC	1 cut(s)	392
PfeI	GAWTC	3 cut(s)	307, 586, 977
PfoI	TCCNGGA	2 cut(s)	171, 864
PkrI	GCNGC	6 cut(s)	283, 433, 457, 881, 929, 1085
PleI	GAGTC	2 cut(s)	429, 562
PpsI	GAGTC	2 cut(s)	429, 562
PscI	ACATGT	1 cut(s)	716
Psp124BI	GAGCTC	1 cut(s)	30
Psp6I	CCWGG	2 cut(s)	171, 864
PspFI	CCCAGC	1 cut(s)	923
PspGI	CCWGG	2 cut(s)	171, 864
PspN4I	GGNNCC	2 cut(s)	921, 1002
PspPI	GGNCC	1 cut(s)	1030
PsuI	RGATCY	1 cut(s)	1000
PvuII	CAGCTG	1 cut(s)	960
RsaI	GTAC	2 cut(s)	819, 921
RsaNI	GTAC	2 cut(s)	818, 920
SacI	GAGCTC	1 cut(s)	30
SapI	GCTCTTC	1 cut(s)	635
SaqAI	TTAA	4 cut(s)	783, 822, 1011, 1055
SatI	GCNGC	6 cut(s)	282, 432, 456, 880, 928, 1084
Sau3AI	GATC	3 cut(s)	52, 613, 1000
Sau96I	GGNCC	1 cut(s)	1030
SchI	GAGTC	2 cut(s)	430, 562
ScrFI	CCNGG	2 cut(s)	173, 866
SduI	GDGCHC	2 cut(s)	30, 483
SfaNI	GCATC	3 cut(s)	937, 959, 1001
SfcI	CTRYAG	1 cut(s)	987
SfuI	TTCGAA	1 cut(s)	525
SinI	GGWCC	1 cut(s)	1030
Sse9I	AATT	2 cut(s)	601, 762
SsiI	CCGC	6 cut(s)	281, 348, 432, 456, 580, 701
SspMI	CTAG	1 cut(s)	872
SstI	GAGCTC	1 cut(s)	30
StyD4I	CCNGG	2 cut(s)	171, 864
StyI	CCWWGG	1 cut(s)	892
TaaI	ACNGT	1 cut(s)	128
TaiI	ACGT	2 cut(s)	971, 1077
TaqI	TCGA	6 cut(s)	51, 465, 525, 566, 885, 1006
TasI	AATT	2 cut(s)	601, 762
TatI	WGTACW	1 cut(s)	817
TauI	GCSGC	3 cut(s)	284, 434, 458
TfiI	GAWTC	3 cut(s)	307, 586, 977
Tru1I	TTAA	4 cut(s)	783, 822, 1011, 1055
Tru9I	TTAA	4 cut(s)	783, 822, 1011, 1055
TscAI	CASTG	3 cut(s)	256, 597, 748
TseFI	GTSAC	1 cut(s)	592
TseI	GCWGC	3 cut(s)	879, 927, 1083
Tsp45I	GTSAC	1 cut(s)	592
TspDTI	ATGAA	5 cut(s)	216, 370, 594, 599, 827
TspGWI	ACGGA	1 cut(s)	721
TspRI	CASTG	3 cut(s)	256, 597, 748
VpaK11BI	GGWCC	1 cut(s)	1030
XapI	RAATTY	1 cut(s)	601
XceI	RCATGY	1 cut(s)	720
XcmI	CCANNNNNNNNNTGG	1 cut(s)	544
XspI	CTAG	1 cut(s)	872
Zsp2I	ATGCAT	1 cut(s)	952

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.