Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0011724

Physical Location & Seq

Genomic Coordinates Forward (+)

19549186 .. 19550160

Gene Structure 975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g25160.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGCTCTGCAAGAAGAACCCCAAGAGCTCCAAAACCCTCCAATGGCGTTCGACCTTTTATTATTCTGCGAGGAAGGATTTGAGGAAGATTTGAGAGACAATGGTAGTGATGAGGAGAGCGAGAACTGTGATGGGTTTTCAAAAAAGCATTCATCTTTCCCTTTGGTTGTTCTGGAAAGTGATATTTTCTGGGAAAATGATGAACTTTCCTCTCTAATCTCCAAAGAGGAACAAACCCATGTGTGTTTCAGTGGCGAAATCTCAGATGGGTCTTTAATGGCAGCTCGGAAAGAGGCGGTTGAGTGGATTCTGAGTGTAAAGGCACACTATGGGTTCTCCTCTTTGACCACCGTTCTAGCTGTGAACTACTTTGATAGATTCATTGCCAGTCGGCCGTTTCAGAGGGACAAGCCGTGGATGAGTCAGCTCGCCGCTGTGGCCTGCGTCTCGTTGGCCGCCAAAGTGGAGGAGACCCATGTGCCCCTTCTCTTAGATTTGCAAGTGGAGGAATCAAAGTATGTTTTCGAAGCAAAAACCATTCAAAGAATGGAGCTTTTGGTGCTATCGACTCTTGCGTGGAGGATGAATCCGGTGACCCCAAATTCATACTTTGATCACATCATCAGGAGGTTCGGTTTGAAGATCCACCTGCATTGGGAGTTTCTGTGGAGATGTGAGCGTTTACTTCTATCCGTCATTGCGGTCCAGATTTACTTGTTATTTGCCTTCCGTATTAGCTACTGCAACAATGCTGTATGTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009987 GO:0010154 GO:0010374 GO:0010440 GO:0010444 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0090558 GO:0090627

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

255

Amino Acids

29.35

Weight (kDa)

4.83

Isoelectric Point (pI)

50.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011724)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50070
fragaria_vesca	FvH4_1g16680
malus_domestica	MD02G1178200.v1.1 MD15G1288100.v1.1
prunus_persica	Prupe.6G229700_v2.0.a1 Prupe.6G229700_v2.0.a1 Prupe.6G229700_v2.0.a1
pyrus_communis	pycom02g14430 pycom15g25160
rosa_chinensis	RchiOBHm_Chr2g0106601
rosa_laevigata	RLG00000017519
rosa_multiflora	Rmu_sc0006221.1_g000010
rosa_roxburghii	Rroxscaffold_2G00136990
rosa_rugosa	Rorug02G0136600
rosa_samantha	Rh2AG187800 Rh2BG198800 Rh2CG192900 Rh2DG194000
rosa_wichuraiana	Rw2G014740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	657
Acc36I	ACCTGC	1 cut(s)	657
AciI	CCGC	4 cut(s)	296, 432, 456, 701
AclWI	GGATC	1 cut(s)	637
AcoI	YGGCCR	2 cut(s)	392, 453
AcsI	RAATTY	1 cut(s)	601
AfiI	CCNNNNNNNGG	2 cut(s)	43, 655
AgsI	TTSAA	3 cut(s)	141, 542, 640
AluBI	AGCT	6 cut(s)	28, 284, 359, 427, 553, 738
AluI	AGCT	6 cut(s)	28, 284, 359, 427, 553, 738
Alw21I	GWGCWC	1 cut(s)	30
Alw26I	GTCTC	3 cut(s)	90, 451, 464
AlwI	GGATC	1 cut(s)	637
AoxI	GGCC	3 cut(s)	392, 438, 453
ApeKI	GCWGC	1 cut(s)	281
ApoI	RAATTY	1 cut(s)	601
AspS9I	GGNCC	1 cut(s)	703
AsuHPI	GGTGA	1 cut(s)	604
AsuII	TTCGAA	1 cut(s)	525
AvaII	GGWCC	1 cut(s)	703
BaeGI	GKGCMC	1 cut(s)	483
BanII	GRGCYC	1 cut(s)	30
Bbv12I	GWGCWC	1 cut(s)	30
BbvI	GCAGC	1 cut(s)	293
BccI	CCATC	2 cut(s)	125, 260
BceAI	ACGGC	2 cut(s)	379, 397
BclI	TGATCA	1 cut(s)	613
BcoDI	GTCTC	3 cut(s)	90, 451, 464
BfaI	CTAG	1 cut(s)	356
BfuAI	ACCTGC	1 cut(s)	657
BglI	GCCNNNNNGGC	1 cut(s)	437
BisI	GCNGC	3 cut(s)	282, 432, 456
BlsI	GCNGC	3 cut(s)	283, 433, 457
Bme18I	GGWCC	1 cut(s)	703
BmgT120I	GGNCC	1 cut(s)	703
Bpu14I	TTCGAA	1 cut(s)	525
BsaI	GGTCTC	1 cut(s)	464
BsaJI	CCNNGG	1 cut(s)	413
BsaWI	WCCGGW	1 cut(s)	589
BsaXI	ACNNNNNCTCC	4 cut(s)	619, 649, 650, 680
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 655
Bse1I	ACTGG	1 cut(s)	387
Bse3DI	GCAATG	2 cut(s)	381, 696
BseDI	CCNNGG	1 cut(s)	413
BseGI	GGATG	2 cut(s)	423, 588
BseLI	CCNNNNNNNGG	2 cut(s)	43, 655
BseMI	GCAATG	2 cut(s)	381, 696
BseMII	CTCAG	2 cut(s)	276, 302
BseNI	ACTGG	1 cut(s)	387
BseRI	GAGGAG	3 cut(s)	128, 328, 482
BseSI	GKGCMC	1 cut(s)	483
BseX3I	CGGCCG	1 cut(s)	392
BseXI	GCAGC	1 cut(s)	293
Bsh1285I	CGRYCG	1 cut(s)	395
BshFI	GGCC	3 cut(s)	394, 440, 455
BsiEI	CGRYCG	1 cut(s)	395
BsiHKAI	GWGCWC	1 cut(s)	30
BsiSI	CCGG	1 cut(s)	590
BslFI	GGGAC	1 cut(s)	419
BslI	CCNNNNNNNGG	2 cut(s)	43, 655
BsmAI	GTCTC	3 cut(s)	90, 451, 464
BsmBI	CGTCTC	1 cut(s)	451
BsmFI	GGGAC	1 cut(s)	419
BsmI	GAATGC	1 cut(s)	148
BsnI	GGCC	3 cut(s)	394, 440, 455
Bso31I	GGTCTC	1 cut(s)	464
Bsp119I	TTCGAA	1 cut(s)	525
Bsp1286I	GDGCHC	2 cut(s)	30, 483
Bsp143I	GATC	2 cut(s)	613, 642
BspACI	CCGC	4 cut(s)	296, 432, 456, 701
BspANI	GGCC	3 cut(s)	394, 440, 455
BspCNI	CTCAG	2 cut(s)	275, 303
BspMI	ACCTGC	1 cut(s)	657
BspPI	GGATC	1 cut(s)	637
BspT104I	TTCGAA	1 cut(s)	525
BspTNI	GGTCTC	1 cut(s)	464
BsrDI	GCAATG	2 cut(s)	381, 696
BsrI	ACTGG	1 cut(s)	387
BssECI	CCNNGG	1 cut(s)	413
BssMI	GATC	2 cut(s)	613, 642
Bst4CI	ACNGT	2 cut(s)	128, 352
BstBI	TTCGAA	1 cut(s)	525
BstC8I	GCNNGC	2 cut(s)	429, 442
BstDEI	CTNAG	3 cut(s)	262, 311, 490
BstDSI	CCRYGG	1 cut(s)	413
BstEII	GGTNACC	1 cut(s)	592
BstF5I	GGATG	2 cut(s)	423, 588
BstKTI	GATC	2 cut(s)	616, 645
BstMAI	GTCTC	3 cut(s)	90, 451, 464
BstMBI	GATC	2 cut(s)	613, 642
BstMCI	CGRYCG	1 cut(s)	395
BstMWI	GCNNNNNNNGC	2 cut(s)	437, 559
BstPI	GGTNACC	1 cut(s)	592
BstSLI	GKGCMC	1 cut(s)	483
BstV1I	GCAGC	1 cut(s)	293
BstX2I	RGATCY	1 cut(s)	642
BstYI	RGATCY	1 cut(s)	642
BstZI	CGGCCG	1 cut(s)	392
BsuRI	GGCC	3 cut(s)	394, 440, 455
BtgI	CCRYGG	1 cut(s)	413
BtsCI	GGATG	2 cut(s)	423, 588
BtsIMutI	CAGTG	1 cut(s)	256
BveI	ACCTGC	1 cut(s)	657
Cac8I	GCNNGC	2 cut(s)	429, 442
Cfr13I	GGNCC	1 cut(s)	703
CseI	GACGC	1 cut(s)	433
CspCI	CAANNNNNGTGG	2 cut(s)	635, 670
CviAII	CATG	2 cut(s)	239, 476
DdeI	CTNAG	3 cut(s)	262, 311, 490
DpnI	GATC	2 cut(s)	615, 644
DpnII	GATC	2 cut(s)	613, 642
EaeI	YGGCCR	2 cut(s)	392, 453
EagI	CGGCCG	1 cut(s)	392
Ecl136II	GAGCTC	1 cut(s)	28
EclXI	CGGCCG	1 cut(s)	392
Eco24I	GRGCYC	1 cut(s)	30
Eco31I	GGTCTC	1 cut(s)	464
Eco47I	GGWCC	1 cut(s)	703
Eco52I	CGGCCG	1 cut(s)	392
Eco53kI	GAGCTC	1 cut(s)	28
Eco91I	GGTNACC	1 cut(s)	592
EcoICRI	GAGCTC	1 cut(s)	28
EcoO65I	GGTNACC	1 cut(s)	592
EcoT38I	GRGCYC	1 cut(s)	30
Esp3I	CGTCTC	1 cut(s)	451
FaeI	CATG	2 cut(s)	242, 479
FaiI	YATR	6 cut(s)	240, 330, 477, 519, 607, 757
FaqI	GGGAC	1 cut(s)	419
FatI	CATG	2 cut(s)	238, 475
FbaI	TGATCA	1 cut(s)	613
Fnu4HI	GCNGC	3 cut(s)	282, 432, 456
FokI	GGATG	2 cut(s)	430, 595
FriOI	GRGCYC	1 cut(s)	30
Fsp4HI	GCNGC	3 cut(s)	282, 432, 456
FspBI	CTAG	1 cut(s)	356
GluI	GCNGC	3 cut(s)	282, 432, 456
HaeIII	GGCC	3 cut(s)	394, 440, 455
HapII	CCGG	1 cut(s)	590
HgaI	GACGC	1 cut(s)	433
Hin1II	CATG	2 cut(s)	242, 479
HinfI	GANTC	6 cut(s)	307, 378, 421, 509, 568, 586
HpaII	CCGG	1 cut(s)	590
HphI	GGTGA	1 cut(s)	604
Hpy166II	GTNNAC	2 cut(s)	364, 683
Hpy188I	TCNGA	4 cut(s)	265, 288, 312, 402
Hpy188III	TCNNGA	3 cut(s)	173, 625, 706
Hpy8I	GTNNAC	2 cut(s)	364, 683
HpyAV	CCTTC	3 cut(s)	68, 494, 736
HpyCH4III	ACNGT	2 cut(s)	128, 352
HpyCH4V	TGCA	4 cut(s)	10, 499, 652, 744
HpyF10VI	GCNNNNNNNGC	2 cut(s)	437, 559
HpyF3I	CTNAG	3 cut(s)	262, 311, 490
Hsp92II	CATG	2 cut(s)	242, 479
Ksp22I	TGATCA	1 cut(s)	613
Kzo9I	GATC	2 cut(s)	613, 642
LmnI	GCTCC	2 cut(s)	33, 550
LpnPI	CCDG	8 cut(s)	158, 175, 400, 454, 603, 610, 662, 719
Lsp1109I	GCAGC	1 cut(s)	293
MaeI	CTAG	1 cut(s)	356
MaeIII	GTNAC	1 cut(s)	592
MalI	GATC	2 cut(s)	615, 644
MboI	GATC	2 cut(s)	613, 642
MboII	GAAGA	3 cut(s)	26, 98, 652
MflI	RGATCY	1 cut(s)	642
MhlI	GDGCHC	2 cut(s)	30, 483
MluCI	AATT	1 cut(s)	601
MlyI	GAGTC	2 cut(s)	430, 562
MseI	TTAA	1 cut(s)	275
MspA1I	CMGCKG	1 cut(s)	434
MspI	CCGG	1 cut(s)	590
Mva1269I	GAATGC	1 cut(s)	148
MwoI	GCNNNNNNNGC	2 cut(s)	437, 559
NdeII	GATC	2 cut(s)	613, 642
NlaIII	CATG	2 cut(s)	242, 479
NmuCI	GTSAC	1 cut(s)	592
NspV	TTCGAA	1 cut(s)	525
PaqCI	CACCTGC	1 cut(s)	657
PcsI	WCGNNNNNNNCGW	1 cut(s)	572
PctI	GAATGC	1 cut(s)	148
PfeI	GAWTC	4 cut(s)	307, 378, 509, 586
PkrI	GCNGC	3 cut(s)	283, 433, 457
PleI	GAGTC	2 cut(s)	429, 562
PpsI	GAGTC	2 cut(s)	429, 562
Psp124BI	GAGCTC	1 cut(s)	30
PspEI	GGTNACC	1 cut(s)	592
PspPI	GGNCC	1 cut(s)	703
PsuI	RGATCY	1 cut(s)	642
SacI	GAGCTC	1 cut(s)	30
SaqAI	TTAA	1 cut(s)	275
SatI	GCNGC	3 cut(s)	282, 432, 456
Sau3AI	GATC	2 cut(s)	613, 642
Sau96I	GGNCC	1 cut(s)	703
SchI	GAGTC	2 cut(s)	430, 562
SduI	GDGCHC	2 cut(s)	30, 483
SetI	ASST	9 cut(s)	30, 57, 286, 361, 429, 555, 632, 651, 740
SfuI	TTCGAA	1 cut(s)	525
SinI	GGWCC	1 cut(s)	703
Sse9I	AATT	1 cut(s)	601
SsiI	CCGC	4 cut(s)	296, 432, 456, 701
SspMI	CTAG	1 cut(s)	356
SstI	GAGCTC	1 cut(s)	30
TaaI	ACNGT	2 cut(s)	128, 352
TaqI	TCGA	3 cut(s)	51, 525, 566
TasI	AATT	1 cut(s)	601
TauI	GCSGC	2 cut(s)	434, 458
TfiI	GAWTC	4 cut(s)	307, 378, 509, 586
Tru1I	TTAA	1 cut(s)	275
Tru9I	TTAA	1 cut(s)	275
TscAI	CASTG	1 cut(s)	256
TseFI	GTSAC	1 cut(s)	592
TseI	GCWGC	1 cut(s)	281
Tsp45I	GTSAC	1 cut(s)	592
TspDTI	ATGAA	5 cut(s)	141, 216, 370, 594, 599
TspGWI	ACGGA	2 cut(s)	682, 719
TspRI	CASTG	1 cut(s)	256
VpaK11BI	GGWCC	1 cut(s)	703
XapI	RAATTY	1 cut(s)	601
XcmI	CCANNNNNNNNNTGG	1 cut(s)	544
XspI	CTAG	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.