Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0010520

Physical Location & Seq

Genomic Coordinates Forward (+)

12409093 .. 12410625

Gene Structure 1533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g20180.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGTCAACAATAACGTCGTCCATCGATCTTCTGAGCTCGAGAAGTCGTGTTCATGTAATTCCTCATCAAAGAGTTCACCGGAGTTTGTTTTCTTCATTGGCAAGAAAACCACGGCTGGGTTTCATGGCGGCCAACCCTTCATTCTTGTCTCTCTCAATAGGTCAGAGGAGTAGTGCTCTTAGCAGAAGCGACGCCAAGATGAACAAGATTGTATGCAATGTCTCAGGAGCTCCTACTCCATCTGGAGCACCTTCATGGGGCTGGATGATCGGGATGCTAATATCAGTGGTAATACCCTTTTGGAGACACAAATGGGGGCCCTTGCAAATAATTAAAAATAGGGTGGACATGGTAATGAACACAGTTGAAGCAGTGGCGGAGGTGGTCGAAGCGGTGGCGCATAAAGTGGAAGAGGTGGCAGATGATATAGCTGATAAACTTCCTGAAGATGGAAAGCTTAAGTCTGCATTTGAAGCAGTTGAAGCAATAGCTAAAGAAACAGCCAAAGATGCTCACATGGTGGATGAGCTAATTGAGAATGTTGAGGCAGCGGAAGATAAAGTTGAAGACTTCTTTGAGTCTGCCACGCATGGAGCTGAAGATCAGAAGACCAAAGTCGACGACGTTGGTGGAGAAGAAGGAAATAATGTAGAAGAAAAGAAAATCGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

224

Amino Acids

24.42

Weight (kDa)

5.34

Isoelectric Point (pI)

41.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010520)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20180 FvH4_1g20180 FvH4_1g20180
malus_domestica	MD15G1317500.v1.1 MD15G1317700.v1.1
prunus_persica	Prupe.6G194100_v2.0.a1 Prupe.6G194200_v2.0.a1
pyrus_communis	pycom15g28020 pycom15g28030
rosa_chinensis	RchiOBHm_Chr2g0112251
rosa_laevigata	RLG00000017963
rosa_multiflora	Rmu_sc0001386.1_g000027 Rmu_sc0004467.1_g000019
rosa_roxburghii	Rroxscaffold_2G00131600
rosa_rugosa	Rorug02G0179400 Rorug02G0179500
rosa_samantha	Rh2AG231800 Rh2BG245300 Rh2CG236200 Rh2DG239700
rosa_wichuraiana	Rw2G017990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	618
AciI	CCGC	4 cut(s)	128, 377, 392, 551
AcoI	YGGCCR	1 cut(s)	129
AcuI	CTGAAG	2 cut(s)	465, 618
AcyI	GRCGYC	1 cut(s)	192
AdeI	CACNNNGTG	1 cut(s)	520
AfiI	CCNNNNNNNGG	3 cut(s)	116, 257, 449
AflII	CTTAAG	1 cut(s)	458
AgsI	TTSAA	4 cut(s)	368, 473, 482, 566
AjuI	GAANNNNNNNTTGG	2 cut(s)	125, 157
AluBI	AGCT	7 cut(s)	36, 230, 431, 457, 491, 529, 596
AluI	AGCT	7 cut(s)	36, 230, 431, 457, 491, 529, 596
Alw21I	GWGCWC	4 cut(s)	38, 178, 232, 250
Alw26I	GTCTC	3 cut(s)	153, 226, 298
Ama87I	CYCGRG	1 cut(s)	37
AoxI	GGCC	2 cut(s)	129, 317
ApaI	GGGCCC	1 cut(s)	321
ApeKI	GCWGC	1 cut(s)	548
AspLEI	GCGC	1 cut(s)	400
AspS9I	GGNCC	2 cut(s)	317, 318
AsuHPI	GGTGA	1 cut(s)	68
AvaI	CYCGRG	1 cut(s)	37
BaeGI	GKGCMC	1 cut(s)	321
BanII	GRGCYC	3 cut(s)	38, 232, 321
BbsI	GAAGAC	2 cut(s)	573, 614
Bbv12I	GWGCWC	4 cut(s)	38, 178, 232, 250
BbvI	GCAGC	1 cut(s)	560
BccI	CCATC	3 cut(s)	29, 247, 443
BceAI	ACGGC	1 cut(s)	128
BcoDI	GTCTC	3 cut(s)	153, 226, 298
BfrI	CTTAAG	1 cut(s)	458
BisI	GCNGC	2 cut(s)	129, 549
BlsI	GCNGC	2 cut(s)	130, 550
BmeT110I	CYCGRG	1 cut(s)	37
BmgT120I	GGNCC	2 cut(s)	317, 318
BmiI	GGNNCC	2 cut(s)	318, 319
BmsI	GCATC	2 cut(s)	264, 499
BoxI	GACNNNNGTC	1 cut(s)	614
BpiI	GAAGAC	2 cut(s)	573, 614
BplI	GAGNNNNNCTC	2 cut(s)	160, 192
BpmI	CTGGAG	1 cut(s)	264
Bsa29I	ATCGAT	1 cut(s)	24
BsaHI	GRCGYC	1 cut(s)	192
BsaJI	CCNNGG	1 cut(s)	110
BsaWI	WCCGGW	1 cut(s)	78
Bsc4I	CCNNNNNNNGG	3 cut(s)	116, 257, 449
Bse3DI	GCAATG	1 cut(s)	223
BseCI	ATCGAT	1 cut(s)	24
BseDI	CCNNGG	1 cut(s)	110
BseGI	GGATG	3 cut(s)	270, 279, 529
BseLI	CCNNNNNNNGG	3 cut(s)	116, 257, 449
BseMI	GCAATG	1 cut(s)	223
BseMII	CTCAG	2 cut(s)	23, 237
BseRI	GAGGAG	1 cut(s)	181
BseSI	GKGCMC	1 cut(s)	321
BseXI	GCAGC	1 cut(s)	560
BseYI	CCCAGC	1 cut(s)	115
BshFI	GGCC	2 cut(s)	131, 319
BshVI	ATCGAT	1 cut(s)	24
BsiHKAI	GWGCWC	4 cut(s)	38, 178, 232, 250
BsiHKCI	CYCGRG	1 cut(s)	37
BsiSI	CCGG	1 cut(s)	79
BslI	CCNNNNNNNGG	3 cut(s)	116, 257, 449
BsmAI	GTCTC	3 cut(s)	153, 226, 298
BsnI	GGCC	2 cut(s)	131, 319
BsoBI	CYCGRG	1 cut(s)	37
Bsp120I	GGGCCC	1 cut(s)	317
Bsp1286I	GDGCHC	5 cut(s)	38, 178, 232, 250, 321
Bsp143I	GATC	3 cut(s)	25, 267, 601
BspACI	CCGC	4 cut(s)	128, 377, 392, 551
BspANI	GGCC	2 cut(s)	131, 319
BspCNI	CTCAG	2 cut(s)	24, 236
BspDI	ATCGAT	1 cut(s)	24
BspLI	GGNNCC	2 cut(s)	318, 319
BspTI	CTTAAG	1 cut(s)	458
BsrDI	GCAATG	1 cut(s)	223
BssECI	CCNNGG	1 cut(s)	110
BssMI	GATC	3 cut(s)	25, 267, 601
BssNI	GRCGYC	1 cut(s)	192
Bst4CI	ACNGT	1 cut(s)	364
Bst6I	CTCTTC	1 cut(s)	405
BstACI	GRCGYC	1 cut(s)	192
BstAFI	CTTAAG	1 cut(s)	458
BstDEI	CTNAG	3 cut(s)	32, 179, 223
BstDSI	CCRYGG	1 cut(s)	110
BstF5I	GGATG	3 cut(s)	270, 279, 529
BstHHI	GCGC	1 cut(s)	400
BstKTI	GATC	3 cut(s)	28, 270, 604
BstMAI	GTCTC	3 cut(s)	153, 226, 298
BstMBI	GATC	3 cut(s)	25, 267, 601
BstMWI	GCNNNNNNNGC	3 cut(s)	473, 482, 509
BstPAI	GACNNNNGTC	1 cut(s)	614
BstSLI	GKGCMC	1 cut(s)	321
BstV1I	GCAGC	1 cut(s)	560
BstV2I	GAAGAC	2 cut(s)	573, 614
Bsu15I	ATCGAT	1 cut(s)	24
BsuRI	GGCC	2 cut(s)	131, 319
BsuTUI	ATCGAT	1 cut(s)	24
BtgI	CCRYGG	1 cut(s)	110
BtsCI	GGATG	3 cut(s)	270, 279, 529
BtsI	GCAGTG	1 cut(s)	378
BtsIMutI	CAGTG	2 cut(s)	291, 378
CfoI	GCGC	1 cut(s)	400
Cfr13I	GGNCC	2 cut(s)	317, 318
ClaI	ATCGAT	1 cut(s)	24
CseI	GACGC	1 cut(s)	200
CviAII	CATG	6 cut(s)	53, 124, 255, 349, 517, 590
DdeI	CTNAG	3 cut(s)	32, 179, 223
DpnI	GATC	3 cut(s)	27, 269, 603
DpnII	GATC	3 cut(s)	25, 267, 601
DraIII	CACNNNGTG	1 cut(s)	520
EaeI	YGGCCR	1 cut(s)	129
Eam1104I	CTCTTC	1 cut(s)	405
EarI	CTCTTC	1 cut(s)	405
EciI	GGCGGA	1 cut(s)	392
Ecl136II	GAGCTC	2 cut(s)	36, 230
Eco24I	GRGCYC	3 cut(s)	38, 232, 321
Eco53kI	GAGCTC	2 cut(s)	36, 230
Eco57I	CTGAAG	2 cut(s)	465, 618
Eco88I	CYCGRG	1 cut(s)	37
EcoICRI	GAGCTC	2 cut(s)	36, 230
EcoO109I	RGGNCCY	2 cut(s)	317, 318
EcoT38I	GRGCYC	3 cut(s)	38, 232, 321
FaeI	CATG	6 cut(s)	56, 127, 258, 352, 520, 593
FaiI	YATR	9 cut(s)	54, 125, 214, 256, 350, 402, 428, 518, 591
FatI	CATG	6 cut(s)	52, 123, 254, 348, 516, 589
FblI	GTMKAC	1 cut(s)	618
Fnu4HI	GCNGC	2 cut(s)	129, 549
FokI	GGATG	3 cut(s)	277, 286, 536
FriOI	GRGCYC	3 cut(s)	38, 232, 321
Fsp4HI	GCNGC	2 cut(s)	129, 549
GlaI	GCGC	1 cut(s)	399
GluI	GCNGC	2 cut(s)	129, 549
GsaI	CCCAGC	1 cut(s)	119
GsuI	CTGGAG	1 cut(s)	264
HaeIII	GGCC	2 cut(s)	131, 319
HapII	CCGG	1 cut(s)	79
HgaI	GACGC	1 cut(s)	200
HhaI	GCGC	1 cut(s)	400
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	6 cut(s)	56, 127, 258, 352, 520, 593
Hin6I	GCGC	1 cut(s)	398
HinP1I	GCGC	1 cut(s)	398
HincII	GTYRAC	2 cut(s)	6, 619
HindII	GTYRAC	2 cut(s)	6, 619
HindIII	AAGCTT	1 cut(s)	455
HinfI	GANTC	1 cut(s)	578
HpaII	CCGG	1 cut(s)	79
HphI	GGTGA	1 cut(s)	68
Hpy166II	GTNNAC	4 cut(s)	6, 76, 346, 619
Hpy188I	TCNGA	3 cut(s)	33, 165, 606
Hpy188III	TCNNGA	5 cut(s)	39, 225, 243, 271, 443
Hpy8I	GTNNAC	4 cut(s)	6, 76, 346, 619
Hpy99I	CGWCG	4 cut(s)	19, 194, 623, 626
HpyAV	CCTTC	3 cut(s)	147, 261, 632
HpyCH4III	ACNGT	1 cut(s)	364
HpyCH4IV	ACGT	2 cut(s)	14, 624
HpyCH4V	TGCA	3 cut(s)	216, 325, 467
HpyF10VI	GCNNNNNNNGC	3 cut(s)	473, 482, 509
HpyF3I	CTNAG	3 cut(s)	32, 179, 223
HpySE526I	ACGT	2 cut(s)	14, 624
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	6 cut(s)	56, 127, 258, 352, 520, 593
HspAI	GCGC	1 cut(s)	398
Kzo9I	GATC	3 cut(s)	25, 267, 601
LmnI	GCTCC	4 cut(s)	227, 235, 245, 593
LpnPI	CCDG	6 cut(s)	92, 101, 210, 228, 247, 456
Lsp1109I	GCAGC	1 cut(s)	560
LweI	GCATC	2 cut(s)	264, 499
MaeII	ACGT	2 cut(s)	14, 624
MalI	GATC	3 cut(s)	27, 269, 603
MboI	GATC	3 cut(s)	25, 267, 601
MhlI	GDGCHC	5 cut(s)	38, 178, 232, 250, 321
MluCI	AATT	3 cut(s)	57, 330, 531
MlyI	GAGTC	1 cut(s)	587
MnlI	CCTC	5 cut(s)	72, 159, 373, 406, 538
MseI	TTAA	2 cut(s)	333, 459
MslI	CAYNNNNRTG	2 cut(s)	253, 353
MspA1I	CMGCKG	1 cut(s)	551
MspCI	CTTAAG	1 cut(s)	458
MspI	CCGG	1 cut(s)	79
MwoI	GCNNNNNNNGC	3 cut(s)	473, 482, 509
NdeII	GATC	3 cut(s)	25, 267, 601
NlaIII	CATG	6 cut(s)	56, 127, 258, 352, 520, 593
NlaIV	GGNNCC	2 cut(s)	318, 319
PaeR7I	CTCGAG	1 cut(s)	37
PkrI	GCNGC	2 cut(s)	130, 550
PleI	GAGTC	1 cut(s)	586
PpsI	GAGTC	1 cut(s)	586
PshAI	GACNNNNGTC	1 cut(s)	614
Psp124BI	GAGCTC	2 cut(s)	38, 232
PspFI	CCCAGC	1 cut(s)	115
PspN4I	GGNNCC	2 cut(s)	318, 319
PspOMI	GGGCCC	1 cut(s)	317
PspPI	GGNCC	2 cut(s)	317, 318
RseI	CAYNNNNRTG	2 cut(s)	253, 353
SacI	GAGCTC	2 cut(s)	38, 232
SalI	GTCGAC	1 cut(s)	617
SaqAI	TTAA	2 cut(s)	333, 459
SatI	GCNGC	2 cut(s)	129, 549
Sau3AI	GATC	3 cut(s)	25, 267, 601
Sau96I	GGNCC	2 cut(s)	317, 318
SchI	GAGTC	1 cut(s)	587
SduI	GDGCHC	5 cut(s)	38, 178, 232, 250, 321
SfaNI	GCATC	2 cut(s)	264, 499
Sfr274I	CTCGAG	1 cut(s)	37
SlaI	CTCGAG	1 cut(s)	37
SmiMI	CAYNNNNRTG	2 cut(s)	253, 353
SmlI	CTYRAG	2 cut(s)	37, 458
SmoI	CTYRAG	2 cut(s)	37, 458
Sse9I	AATT	3 cut(s)	57, 330, 531
SsiI	CCGC	4 cut(s)	128, 377, 392, 551
SstI	GAGCTC	2 cut(s)	38, 232
TaaI	ACNGT	1 cut(s)	364
TaiI	ACGT	2 cut(s)	17, 627
TaqI	TCGA	5 cut(s)	24, 38, 387, 618, 666
TasI	AATT	3 cut(s)	57, 330, 531
TauI	GCSGC	1 cut(s)	131
Tru1I	TTAA	2 cut(s)	333, 459
Tru9I	TTAA	2 cut(s)	333, 459
TscAI	CASTG	2 cut(s)	291, 378
TseI	GCWGC	1 cut(s)	548
TspDTI	ATGAA	7 cut(s)	41, 84, 112, 129, 215, 243, 371
TspRI	CASTG	2 cut(s)	291, 378
Vha464I	CTTAAG	1 cut(s)	458
XhoI	CTCGAG	1 cut(s)	37
XmiI	GTMKAC	1 cut(s)	618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.