Rorug02G0179500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0010520
Physical Location & Seq
Forward (+)
16631797 .. 16635659
3863 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0179500.1

Sequence Viewer

Length: 714 bp
ATGGCCTCGATTTTCGTTCCAGACCCTTCGCTTCTCCGTAACTTCACGGCGGCGGCTCCGTCGAATCGGCTGCCGTGCCTGCTGCTTCTATCTCTCCCCGGCCGGAGGCCGTTCTCGGTGTCCGTCGCCACGTGTCCAAATTTGGGGCTAGGGAGGTCCATCGCCGCCGTCTCCGGCGCCGCTAGCGACACCTTCATGGCTAATTCGTCCAAAAATGGAGTTCTTACAGTTGGTGATTTCATGACTAGAAGAGAGGATTTGCATGTGGTGAATCCTACCACAACTGTAGATGAAGCTATAGAGCTTCTTGTGGAAAACAGAATCACTGGTTTTCCGGTGATCGACAGTGACTGGAAATTGGTGGGTCTTGTTTCAGATTATGACTTGTTAGCATTGGACACAATATCAGGTGGTGGTGGAAAAACTGACAACAGCATGTTTCCTGAAGTTGACAGCTCTTGGAAAACTTTTAATGAGGTACAGAAGTTGCTCAGTAAAACCAATGGCCAGGTGGTGGGCGATGTGATGACACCAGCTCCAGTTGTTGTTCGTGAAACCACTAATCTTGAGGATGTTGCTAGGTTATTGCTTGAAACAAAATATCGCCGACTTCCGGTTGTAGACGACAGCGGTAAACTGGTTGGAATTATTACAAGGGGGAACATCATAAGAGCTGCCCTTCAAATGAAACATGCAAGTGAATTGAAAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

237

Amino Acids

25.52

Weight (kDa)

5.75

Isoelectric Point (pI)

37.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBS PF00571 77 - 131 4.1e-14 CBS domain
CBS PF00571 172 - 226 7.8e-19 CBS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 176
AccB7I CCANNNNNTGG 1 cut(s) 514
AccI GTMKAC 1 cut(s) 621
AciI CCGC 5 cut(s) 50, 53, 165, 180, 630
AcoI YGGCCR 2 cut(s) 100, 505
AcsI RAATTY 1 cut(s) 139
AcuI CTGAAG 1 cut(s) 465
AcvI CACGTG 1 cut(s) 132
AcyI GRCGYC 1 cut(s) 177
AfaI GTAC 1 cut(s) 480
AfiI CCNNNNNNNGG 4 cut(s) 105, 143, 514, 613
AflIII ACRYGT 1 cut(s) 131
AgsI TTSAA 3 cut(s) 593, 683, 706
AjnI CCWGG 1 cut(s) 507
AluBI AGCT 5 cut(s) 296, 304, 456, 536, 674
AluI AGCT 5 cut(s) 296, 304, 456, 536, 674
Alw26I GTCTC 1 cut(s) 175
AlwNI CAGNNNCTG 1 cut(s) 351
AoxI GGCC 4 cut(s) 3, 100, 107, 505
ApeKI GCWGC 3 cut(s) 70, 82, 674
ApoI RAATTY 1 cut(s) 139
AspLEI GCGC 1 cut(s) 179
AspS9I GGNCC 1 cut(s) 156
AsuC2I CCSGG 1 cut(s) 99
AsuHPI GGTGA 3 cut(s) 245, 280, 349
AsuNHI GCTAGC 1 cut(s) 182
AvaII GGWCC 1 cut(s) 156
BaeI ACNNNNGTAYC 2 cut(s) 470, 503
BalI TGGCCA 1 cut(s) 507
BanI GGYRCC 1 cut(s) 176
BbrPI CACGTG 1 cut(s) 132
BbvI GCAGC 3 cut(s) 57, 69, 661
BccI CCATC 1 cut(s) 167
BceAI ACGGC 4 cut(s) 58, 63, 94, 152
BcgI CGANNNNNNTGC 2 cut(s) 52, 86
BciT130I CCWGG 1 cut(s) 509
BcnI CCSGG 1 cut(s) 99
BcoDI GTCTC 1 cut(s) 175
BfaI CTAG 4 cut(s) 149, 183, 246, 579
BfmI CTRYAG 2 cut(s) 285, 297
BfoI RGCGCY 1 cut(s) 180
BisI GCNGC 7 cut(s) 51, 54, 71, 83, 165, 180, 675
BlsI GCNGC 7 cut(s) 52, 55, 72, 84, 166, 181, 676
Bme1390I CCNGG 2 cut(s) 99, 509
Bme18I GGWCC 1 cut(s) 156
BmgT120I GGNCC 1 cut(s) 156
BmiI GGNNCC 2 cut(s) 57, 178
BmrFI CCNGG 2 cut(s) 99, 509
BmtI GCTAGC 1 cut(s) 186
BpmI CTGGAG 1 cut(s) 522
BpuEI CTTGAG 1 cut(s) 587
BpuMI CCSGG 1 cut(s) 99
BsaAI YACGTR 1 cut(s) 132
BsaHI GRCGYC 1 cut(s) 177
BsaJI CCNNGG 1 cut(s) 97
BsaWI WCCGGW 2 cut(s) 334, 613
BsaXI ACNNNNNCTCC 2 cut(s) 520, 550
Bsc4I CCNNNNNNNGG 4 cut(s) 105, 143, 514, 613
Bse1I ACTGG 4 cut(s) 331, 356, 539, 642
BseBI CCWGG 1 cut(s) 509
BseDI CCNNGG 1 cut(s) 97
BseGI GGATG 1 cut(s) 577
BseLI CCNNNNNNNGG 4 cut(s) 105, 143, 514, 613
BseMII CTCAG 1 cut(s) 505
BseNI ACTGG 4 cut(s) 331, 356, 539, 642
BseX3I CGGCCG 1 cut(s) 100
BseXI GCAGC 3 cut(s) 57, 69, 661
Bsh1285I CGRYCG 1 cut(s) 103
BshFI GGCC 4 cut(s) 5, 102, 109, 507
BshNI GGYRCC 1 cut(s) 176
BsiEI CGRYCG 1 cut(s) 103
BsiSI CCGG 5 cut(s) 99, 103, 174, 335, 614
BslI CCNNNNNNNGG 4 cut(s) 105, 143, 514, 613
BsmAI GTCTC 1 cut(s) 175
BsmBI CGTCTC 1 cut(s) 175
BsnI GGCC 4 cut(s) 5, 102, 109, 507
Bsp143I GATC 1 cut(s) 339
BspACI CCGC 5 cut(s) 50, 53, 165, 180, 630
BspANI GGCC 4 cut(s) 5, 102, 109, 507
BspCNI CTCAG 1 cut(s) 504
BspHI TCATGA 1 cut(s) 240
BspLI GGNNCC 2 cut(s) 57, 178
BspOI GCTAGC 1 cut(s) 186
BspT107I GGYRCC 1 cut(s) 176
BsrI ACTGG 4 cut(s) 331, 356, 539, 642
BssECI CCNNGG 1 cut(s) 97
BssMI GATC 1 cut(s) 339
BssNI GRCGYC 1 cut(s) 177
Bst2UI CCWGG 1 cut(s) 509
Bst4CI ACNGT 3 cut(s) 229, 286, 347
Bst6I CTCTTC 1 cut(s) 244
BstACI GRCGYC 1 cut(s) 177
BstBAI YACGTR 1 cut(s) 132
BstC8I GCNNGC 2 cut(s) 80, 184
BstDEI CTNAG 1 cut(s) 491
BstF5I GGATG 1 cut(s) 577
BstH2I RGCGCY 1 cut(s) 180
BstHHI GCGC 1 cut(s) 179
BstKTI GATC 1 cut(s) 342
BstMAI GTCTC 1 cut(s) 175
BstMBI GATC 1 cut(s) 339
BstMCI CGRYCG 1 cut(s) 103
BstMWI GCNNNNNNNGC 2 cut(s) 79, 183
BstNI CCWGG 1 cut(s) 509
BstNSI RCATGY 3 cut(s) 266, 439, 695
BstSCI CCNGG 2 cut(s) 97, 507
BstSFI CTRYAG 2 cut(s) 285, 297
BstV1I GCAGC 3 cut(s) 57, 69, 661
BstZI CGGCCG 1 cut(s) 100
BsuRI GGCC 4 cut(s) 5, 102, 109, 507
BtgZI GCGATG 2 cut(s) 145, 534
BtsCI GGATG 1 cut(s) 577
BtsIMutI CAGTG 2 cut(s) 324, 352
Cac8I GCNNGC 2 cut(s) 80, 184
CaiI CAGNNNCTG 1 cut(s) 351
CciI TCATGA 1 cut(s) 240
CfoI GCGC 1 cut(s) 179
Cfr13I GGNCC 1 cut(s) 156
Csp6I GTAC 1 cut(s) 479
CspCI CAANNNNNGTGG 2 cut(s) 547, 582
CviAII CATG 5 cut(s) 196, 241, 263, 436, 692
CviQI GTAC 1 cut(s) 479
DdeI CTNAG 1 cut(s) 491
DinI GGCGCC 1 cut(s) 178
DpnI GATC 1 cut(s) 341
DpnII GATC 1 cut(s) 339
EaeI YGGCCR 2 cut(s) 100, 505
EagI CGGCCG 1 cut(s) 100
Eam1104I CTCTTC 1 cut(s) 244
EarI CTCTTC 1 cut(s) 244
EclXI CGGCCG 1 cut(s) 100
Eco47I GGWCC 1 cut(s) 156
Eco52I CGGCCG 1 cut(s) 100
Eco57I CTGAAG 1 cut(s) 465
Eco72I CACGTG 1 cut(s) 132
EcoRII CCWGG 1 cut(s) 507
EgeI GGCGCC 1 cut(s) 178
EheI GGCGCC 1 cut(s) 178
Esp3I CGTCTC 1 cut(s) 175
FaeI CATG 5 cut(s) 199, 244, 266, 439, 695
FaiI YATR 9 cut(s) 197, 242, 264, 299, 381, 437, 668, 693, 712
FatI CATG 5 cut(s) 195, 240, 262, 435, 691
FblI GTMKAC 1 cut(s) 621
Fnu4HI GCNGC 7 cut(s) 51, 54, 71, 83, 165, 180, 675
FokI GGATG 1 cut(s) 584
Fsp4HI GCNGC 7 cut(s) 51, 54, 71, 83, 165, 180, 675
FspBI CTAG 4 cut(s) 149, 183, 246, 579
GlaI GCGC 1 cut(s) 178
GluI GCNGC 7 cut(s) 51, 54, 71, 83, 165, 180, 675
GsuI CTGGAG 1 cut(s) 522
HaeII RGCGCY 1 cut(s) 180
HaeIII GGCC 4 cut(s) 5, 102, 109, 507
HapII CCGG 5 cut(s) 99, 103, 174, 335, 614
HhaI GCGC 1 cut(s) 179
Hin1I GRCGYC 1 cut(s) 177
Hin1II CATG 5 cut(s) 199, 244, 266, 439, 695
Hin6I GCGC 1 cut(s) 177
HinP1I GCGC 1 cut(s) 177
HincII GTYRAC 1 cut(s) 451
HindII GTYRAC 1 cut(s) 451
HinfI GANTC 3 cut(s) 64, 271, 321
HpaII CCGG 5 cut(s) 99, 103, 174, 335, 614
HphI GGTGA 3 cut(s) 245, 280, 349
Hpy166II GTNNAC 3 cut(s) 451, 622, 635
Hpy188I TCNGA 1 cut(s) 376
Hpy188III TCNNGA 5 cut(s) 20, 241, 443, 551, 566
Hpy8I GTNNAC 3 cut(s) 451, 622, 635
Hpy99I CGWCG 2 cut(s) 64, 128
HpyAV CCTTC 3 cut(s) 36, 202, 689
HpyCH4III ACNGT 3 cut(s) 229, 286, 347
HpyCH4IV ACGT 1 cut(s) 131
HpyCH4V TGCA 2 cut(s) 262, 695
HpyF10VI GCNNNNNNNGC 2 cut(s) 79, 183
HpyF3I CTNAG 1 cut(s) 491
HpySE526I ACGT 1 cut(s) 131
Hsp92I GRCGYC 1 cut(s) 177
Hsp92II CATG 5 cut(s) 199, 244, 266, 439, 695
HspAI GCGC 1 cut(s) 177
KasI GGCGCC 1 cut(s) 176
Kzo9I GATC 1 cut(s) 339
LmnI GCTCC 2 cut(s) 61, 541
Lsp1109I GCAGC 3 cut(s) 57, 69, 661
MaeI CTAG 4 cut(s) 149, 183, 246, 579
MaeII ACGT 1 cut(s) 131
MaeIII GTNAC 2 cut(s) 38, 347
MalI GATC 1 cut(s) 341
MboI GATC 1 cut(s) 339
MboII GAAGA 1 cut(s) 261
MlsI TGGCCA 1 cut(s) 507
MluCI AATT 5 cut(s) 139, 202, 356, 645, 701
MluNI TGGCCA 1 cut(s) 507
Mly113I GGCGCC 1 cut(s) 177
MmeI TCCRAC 1 cut(s) 622
MnlI CCTC 6 cut(s) 16, 99, 147, 247, 469, 562
Mox20I TGGCCA 1 cut(s) 507
MscI TGGCCA 1 cut(s) 507
MseI TTAA 1 cut(s) 471
MslI CAYNNNNRTG 2 cut(s) 194, 696
Msp20I TGGCCA 1 cut(s) 507
MspA1I CMGCKG 1 cut(s) 630
MspI CCGG 5 cut(s) 99, 103, 174, 335, 614
MspR9I CCNGG 2 cut(s) 99, 509
MvaI CCWGG 1 cut(s) 509
MwoI GCNNNNNNNGC 2 cut(s) 79, 183
NarI GGCGCC 1 cut(s) 177
NciI CCSGG 1 cut(s) 99
NdeII GATC 1 cut(s) 339
NheI GCTAGC 1 cut(s) 182
NlaIII CATG 5 cut(s) 199, 244, 266, 439, 695
NlaIV GGNNCC 2 cut(s) 57, 178
NmuCI GTSAC 1 cut(s) 347
NspI RCATGY 3 cut(s) 266, 439, 695
PagI TCATGA 1 cut(s) 240
PfeI GAWTC 3 cut(s) 64, 271, 321
PflMI CCANNNNNTGG 1 cut(s) 514
PkrI GCNGC 7 cut(s) 52, 55, 72, 84, 166, 181, 676
PluTI GGCGCC 1 cut(s) 180
PmaCI CACGTG 1 cut(s) 132
PmlI CACGTG 1 cut(s) 132
Ppu21I YACGTR 1 cut(s) 132
Psp6I CCWGG 1 cut(s) 507
PspCI CACGTG 1 cut(s) 132
PspGI CCWGG 1 cut(s) 507
PspN4I GGNNCC 2 cut(s) 57, 178
PspPI GGNCC 1 cut(s) 156
PstNI CAGNNNCTG 1 cut(s) 351
RsaI GTAC 1 cut(s) 480
RsaNI GTAC 1 cut(s) 479
RseI CAYNNNNRTG 2 cut(s) 194, 696
SaqAI TTAA 1 cut(s) 471
SatI GCNGC 7 cut(s) 51, 54, 71, 83, 165, 180, 675
Sau3AI GATC 1 cut(s) 339
Sau96I GGNCC 1 cut(s) 156
ScrFI CCNGG 2 cut(s) 99, 509
SfcI CTRYAG 2 cut(s) 285, 297
SfoI GGCGCC 1 cut(s) 178
SinI GGWCC 1 cut(s) 156
SmiMI CAYNNNNRTG 2 cut(s) 194, 696
SmlI CTYRAG 1 cut(s) 566
SmoI CTYRAG 1 cut(s) 566
Sse9I AATT 5 cut(s) 139, 202, 356, 645, 701
SsiI CCGC 5 cut(s) 50, 53, 165, 180, 630
SspDI GGCGCC 1 cut(s) 176
SspMI CTAG 4 cut(s) 149, 183, 246, 579
StyD4I CCNGG 2 cut(s) 97, 507
TaaI ACNGT 3 cut(s) 229, 286, 347
TaiI ACGT 1 cut(s) 134
TaqI TCGA 3 cut(s) 8, 62, 342
TasI AATT 5 cut(s) 139, 202, 356, 645, 701
TauI GCSGC 4 cut(s) 53, 56, 167, 182
TfiI GAWTC 3 cut(s) 64, 271, 321
Tru1I TTAA 1 cut(s) 471
Tru9I TTAA 1 cut(s) 471
TscAI CASTG 2 cut(s) 331, 352
TseFI GTSAC 1 cut(s) 347
TseI GCWGC 3 cut(s) 70, 82, 674
Tsp45I GTSAC 1 cut(s) 347
TspDTI ATGAA 4 cut(s) 184, 229, 306, 701
TspGWI ACGGA 3 cut(s) 26, 48, 112
TspRI CASTG 2 cut(s) 331, 352
Van91I CCANNNNNTGG 1 cut(s) 514
VpaK11BI GGWCC 1 cut(s) 156
XapI RAATTY 1 cut(s) 139
XceI RCATGY 3 cut(s) 266, 439, 695
XcmI CCANNNNNNNNNTGG 1 cut(s) 508
XmiI GTMKAC 1 cut(s) 621
XspI CTAG 4 cut(s) 149, 183, 246, 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.