Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0010520

Physical Location & Seq

Genomic Coordinates Reverse (-)

68294748 .. 68296124

Gene Structure 1377 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00131600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGTCAACAATCACGTCGTCCATCGATCTTTGGAGCTCGAGAAGTCGTGTACTTGTAATTCCTCAGAGAGTTCATCGGAATTTGTTTTCTATAACGGCAATAAAACCCCAGCAGGGATTCACAGCCGATCCTTTGTTGTTGTCTCTCTCAATAGGCCAGAGGAGTAGTGCTCTTAGCAGAAGCGATGCCAAGATGAACAAGATTGTATGCAATGTTTCAGGAGCTCCAACTCCTTCTGGAGCACCTTCACACTCTTGGAGGGGCTGGATGATAGGGGTGTTATTAACAGTGGTTATACCCTTTTGGAGGCACAAATGGGGGCCCTTGCAAATAATTAAAAATAAGGTGGACATGGTAATGAACACAGTTGAAGTAGTGGCGGAGGTGGTCGAAACGGTGGCCCATAAAGTGGAGGAGGTGGCGGATGGAATAGCTGATAAACTTCCTGAAGATGGAAAGCTTAAAGCGGCAGCTGAAGCAGTTGAAGCCATAGCTAAAGAAACAGCCAAAGATGCTCACATGGTGGATAAGATAATTGAGAATGTTGAGGCAGCGGAAGATAAGGTTGAAGACTTCTTCGAGTCAGCCATGCATGGAGCTGGAGATCAGGTGACCAAAGTCGACGACGATGGTGGTGAACAAGGAAATGTAGAAGAAAAGAAAATCGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

223

Amino Acids

24.28

Weight (kDa)

5.32

Isoelectric Point (pI)

41.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010520)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20180 FvH4_1g20180 FvH4_1g20180
malus_domestica	MD15G1317500.v1.1 MD15G1317700.v1.1
prunus_persica	Prupe.6G194100_v2.0.a1 Prupe.6G194200_v2.0.a1
pyrus_communis	pycom15g28020 pycom15g28030
rosa_chinensis	RchiOBHm_Chr2g0112251
rosa_laevigata	RLG00000017963
rosa_multiflora	Rmu_sc0001386.1_g000027 Rmu_sc0004467.1_g000019
rosa_roxburghii	Rroxscaffold_2G00131600
rosa_rugosa	Rorug02G0179400 Rorug02G0179500
rosa_samantha	Rh2AG231800 Rh2BG245300 Rh2CG236200 Rh2DG239700
rosa_wichuraiana	Rw2G017990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	409
AccI	GTMKAC	1 cut(s)	621
AciI	CCGC	4 cut(s)	380, 422, 467, 554
AclWI	GGATC	1 cut(s)	122
AcsI	RAATTY	1 cut(s)	79
AcuI	CTGAAG	2 cut(s)	468, 495
AdeI	CACNNNGTG	1 cut(s)	523
AfaI	GTAC	1 cut(s)	51
AfiI	CCNNNNNNNGG	4 cut(s)	113, 306, 409, 452
AgsI	TTSAA	3 cut(s)	371, 485, 569
AjiI	CACGTC	1 cut(s)	15
AluBI	AGCT	7 cut(s)	36, 224, 434, 460, 473, 494, 599
AluI	AGCT	7 cut(s)	36, 224, 434, 460, 473, 494, 599
Alw21I	GWGCWC	4 cut(s)	38, 172, 226, 244
Alw26I	GTCTC	1 cut(s)	147
AlwI	GGATC	1 cut(s)	122
Ama87I	CYCGRG	1 cut(s)	37
AoxI	GGCC	3 cut(s)	154, 320, 399
ApaI	GGGCCC	1 cut(s)	324
ApeKI	GCWGC	2 cut(s)	470, 551
ApoI	RAATTY	1 cut(s)	79
AspS9I	GGNCC	3 cut(s)	320, 321, 400
AsuHPI	GGTGA	2 cut(s)	622, 647
AvaI	CYCGRG	1 cut(s)	37
BaeGI	GKGCMC	1 cut(s)	324
BanII	GRGCYC	3 cut(s)	38, 226, 324
BbsI	GAAGAC	1 cut(s)	576
Bbv12I	GWGCWC	4 cut(s)	38, 172, 226, 244
BbvI	GCAGC	2 cut(s)	482, 563
BccI	CCATC	4 cut(s)	29, 419, 446, 623
BceAI	ACGGC	1 cut(s)	111
BcoDI	GTCTC	1 cut(s)	147
BisI	GCNGC	3 cut(s)	468, 471, 552
BlsI	GCNGC	3 cut(s)	469, 472, 553
BmeT110I	CYCGRG	1 cut(s)	37
BmgBI	CACGTC	1 cut(s)	15
BmgT120I	GGNCC	3 cut(s)	320, 321, 400
BmiI	GGNNCC	2 cut(s)	321, 322
BmsI	GCATC	2 cut(s)	175, 502
BoxI	GACNNNNGTC	1 cut(s)	617
BpiI	GAAGAC	1 cut(s)	576
BplI	GAGNNNNNCTC	2 cut(s)	154, 186
BpmI	CTGGAG	2 cut(s)	258, 621
Bsa29I	ATCGAT	1 cut(s)	24
BsaXI	ACNNNNNCTCC	2 cut(s)	594, 624
Bsc4I	CCNNNNNNNGG	4 cut(s)	113, 306, 409, 452
Bse3DI	GCAATG	1 cut(s)	217
BseCI	ATCGAT	1 cut(s)	24
BseGI	GGATG	2 cut(s)	273, 430
BseLI	CCNNNNNNNGG	4 cut(s)	113, 306, 409, 452
BseMI	GCAATG	1 cut(s)	217
BseMII	CTCAG	1 cut(s)	77
BseRI	GAGGAG	2 cut(s)	175, 428
BseSI	GKGCMC	1 cut(s)	324
BseXI	GCAGC	2 cut(s)	482, 563
BseYI	CCCAGC	1 cut(s)	108
BshFI	GGCC	3 cut(s)	156, 322, 401
BshVI	ATCGAT	1 cut(s)	24
BsiHKAI	GWGCWC	4 cut(s)	38, 172, 226, 244
BsiHKCI	CYCGRG	1 cut(s)	37
BslI	CCNNNNNNNGG	4 cut(s)	113, 306, 409, 452
BsmAI	GTCTC	1 cut(s)	147
BsnI	GGCC	3 cut(s)	156, 322, 401
BsoBI	CYCGRG	1 cut(s)	37
Bsp120I	GGGCCC	1 cut(s)	320
Bsp1286I	GDGCHC	5 cut(s)	38, 172, 226, 244, 324
Bsp143I	GATC	3 cut(s)	25, 127, 604
BspACI	CCGC	4 cut(s)	380, 422, 467, 554
BspANI	GGCC	3 cut(s)	156, 322, 401
BspCNI	CTCAG	1 cut(s)	76
BspDI	ATCGAT	1 cut(s)	24
BspLI	GGNNCC	2 cut(s)	321, 322
BspPI	GGATC	1 cut(s)	122
BsrDI	GCAATG	1 cut(s)	217
BssMI	GATC	3 cut(s)	25, 127, 604
Bst4CI	ACNGT	3 cut(s)	289, 367, 397
BstDEI	CTNAG	2 cut(s)	63, 173
BstEII	GGTNACC	1 cut(s)	610
BstENI	CCTNNNNNAGG	1 cut(s)	304
BstF5I	GGATG	2 cut(s)	273, 430
BstKTI	GATC	3 cut(s)	28, 130, 607
BstMAI	GTCTC	1 cut(s)	147
BstMBI	GATC	3 cut(s)	25, 127, 604
BstMWI	GCNNNNNNNGC	3 cut(s)	476, 485, 512
BstPAI	GACNNNNGTC	1 cut(s)	617
BstPI	GGTNACC	1 cut(s)	610
BstSLI	GKGCMC	1 cut(s)	324
BstV1I	GCAGC	2 cut(s)	482, 563
BstV2I	GAAGAC	1 cut(s)	576
Bsu15I	ATCGAT	1 cut(s)	24
BsuRI	GGCC	3 cut(s)	156, 322, 401
BsuTUI	ATCGAT	1 cut(s)	24
BtgZI	GCGATG	1 cut(s)	198
BtrI	CACGTC	1 cut(s)	15
BtsCI	GGATG	2 cut(s)	273, 430
BtsIMutI	CAGTG	1 cut(s)	294
Cfr13I	GGNCC	3 cut(s)	320, 321, 400
ClaI	ATCGAT	1 cut(s)	24
Csp6I	GTAC	1 cut(s)	50
CviAII	CATG	4 cut(s)	352, 520, 589, 593
CviQI	GTAC	1 cut(s)	50
DdeI	CTNAG	2 cut(s)	63, 173
DpnI	GATC	3 cut(s)	27, 129, 606
DpnII	GATC	3 cut(s)	25, 127, 604
DraIII	CACNNNGTG	1 cut(s)	523
EciI	GGCGGA	2 cut(s)	395, 437
Ecl136II	GAGCTC	2 cut(s)	36, 224
Eco24I	GRGCYC	3 cut(s)	38, 226, 324
Eco53kI	GAGCTC	2 cut(s)	36, 224
Eco57I	CTGAAG	2 cut(s)	468, 495
Eco88I	CYCGRG	1 cut(s)	37
Eco91I	GGTNACC	1 cut(s)	610
EcoICRI	GAGCTC	2 cut(s)	36, 224
EcoNI	CCTNNNNNAGG	1 cut(s)	304
EcoO109I	RGGNCCY	2 cut(s)	320, 321
EcoO65I	GGTNACC	1 cut(s)	610
EcoT22I	ATGCAT	1 cut(s)	594
EcoT38I	GRGCYC	3 cut(s)	38, 226, 324
FaeI	CATG	4 cut(s)	355, 523, 592, 596
FaiI	YATR	9 cut(s)	92, 208, 296, 353, 405, 491, 521, 590, 594
FatI	CATG	4 cut(s)	351, 519, 588, 592
FblI	GTMKAC	1 cut(s)	621
Fnu4HI	GCNGC	3 cut(s)	468, 471, 552
FokI	GGATG	2 cut(s)	280, 437
FriOI	GRGCYC	3 cut(s)	38, 226, 324
Fsp4HI	GCNGC	3 cut(s)	468, 471, 552
GluI	GCNGC	3 cut(s)	468, 471, 552
GsaI	CCCAGC	1 cut(s)	112
GsuI	CTGGAG	2 cut(s)	258, 621
HaeIII	GGCC	3 cut(s)	156, 322, 401
Hin1II	CATG	4 cut(s)	355, 523, 592, 596
HincII	GTYRAC	2 cut(s)	6, 622
HindII	GTYRAC	2 cut(s)	6, 622
HindIII	AAGCTT	1 cut(s)	458
HinfI	GANTC	2 cut(s)	117, 581
HphI	GGTGA	2 cut(s)	622, 647
Hpy166II	GTNNAC	5 cut(s)	6, 50, 349, 622, 638
Hpy188I	TCNGA	2 cut(s)	66, 78
Hpy188III	TCNNGA	4 cut(s)	39, 219, 237, 446
Hpy8I	GTNNAC	5 cut(s)	6, 50, 349, 622, 638
Hpy99I	CGWCG	3 cut(s)	19, 626, 629
HpyAV	CCTTC	2 cut(s)	243, 255
HpyCH4III	ACNGT	3 cut(s)	289, 367, 397
HpyCH4IV	ACGT	1 cut(s)	14
HpyCH4V	TGCA	3 cut(s)	210, 328, 592
HpyF10VI	GCNNNNNNNGC	3 cut(s)	476, 485, 512
HpyF3I	CTNAG	2 cut(s)	63, 173
HpySE526I	ACGT	1 cut(s)	14
Hsp92II	CATG	4 cut(s)	355, 523, 592, 596
Kzo9I	GATC	3 cut(s)	25, 127, 604
LmnI	GCTCC	5 cut(s)	33, 221, 229, 239, 596
LpnPI	CCDG	9 cut(s)	98, 122, 170, 204, 222, 250, 459, 585, 593
Lsp1109I	GCAGC	2 cut(s)	482, 563
LweI	GCATC	2 cut(s)	175, 502
MaeII	ACGT	1 cut(s)	14
MaeIII	GTNAC	1 cut(s)	610
MalI	GATC	3 cut(s)	27, 129, 606
MboI	GATC	3 cut(s)	25, 127, 604
MboII	GAAGA	5 cut(s)	461, 568, 569, 581, 665
MhlI	GDGCHC	5 cut(s)	38, 172, 226, 244, 324
MluCI	AATT	4 cut(s)	57, 79, 333, 534
MlyI	GAGTC	1 cut(s)	590
MmeI	TCCRAC	1 cut(s)	251
MnlI	CCTC	8 cut(s)	72, 153, 252, 300, 376, 406, 409, 541
Mph1103I	ATGCAT	1 cut(s)	594
MseI	TTAA	3 cut(s)	284, 336, 462
MslI	CAYNNNNRTG	1 cut(s)	356
MspA1I	CMGCKG	2 cut(s)	473, 554
MwoI	GCNNNNNNNGC	3 cut(s)	476, 485, 512
NdeII	GATC	3 cut(s)	25, 127, 604
NlaIII	CATG	4 cut(s)	355, 523, 592, 596
NlaIV	GGNNCC	2 cut(s)	321, 322
NmuCI	GTSAC	1 cut(s)	610
NsiI	ATGCAT	1 cut(s)	594
PaeR7I	CTCGAG	1 cut(s)	37
PfeI	GAWTC	1 cut(s)	117
PflMI	CCANNNNNTGG	1 cut(s)	409
PkrI	GCNGC	3 cut(s)	469, 472, 553
PleI	GAGTC	1 cut(s)	589
PpsI	GAGTC	1 cut(s)	589
PshAI	GACNNNNGTC	1 cut(s)	617
Psp124BI	GAGCTC	2 cut(s)	38, 226
PspEI	GGTNACC	1 cut(s)	610
PspFI	CCCAGC	1 cut(s)	108
PspN4I	GGNNCC	2 cut(s)	321, 322
PspOMI	GGGCCC	1 cut(s)	320
PspPI	GGNCC	3 cut(s)	320, 321, 400
PvuII	CAGCTG	1 cut(s)	473
RsaI	GTAC	1 cut(s)	51
RsaNI	GTAC	1 cut(s)	50
RseI	CAYNNNNRTG	1 cut(s)	356
SacI	GAGCTC	2 cut(s)	38, 226
SalI	GTCGAC	1 cut(s)	620
SaqAI	TTAA	3 cut(s)	284, 336, 462
SatI	GCNGC	3 cut(s)	468, 471, 552
Sau3AI	GATC	3 cut(s)	25, 127, 604
Sau96I	GGNCC	3 cut(s)	320, 321, 400
SchI	GAGTC	1 cut(s)	590
SduI	GDGCHC	5 cut(s)	38, 172, 226, 244, 324
SfaNI	GCATC	2 cut(s)	175, 502
Sfr274I	CTCGAG	1 cut(s)	37
SlaI	CTCGAG	1 cut(s)	37
SmiMI	CAYNNNNRTG	1 cut(s)	356
SmlI	CTYRAG	1 cut(s)	37
SmoI	CTYRAG	1 cut(s)	37
Sse9I	AATT	4 cut(s)	57, 79, 333, 534
SsiI	CCGC	4 cut(s)	380, 422, 467, 554
SstI	GAGCTC	2 cut(s)	38, 226
TaaI	ACNGT	3 cut(s)	289, 367, 397
TaiI	ACGT	1 cut(s)	17
TaqI	TCGA	6 cut(s)	24, 38, 390, 579, 621, 666
TasI	AATT	4 cut(s)	57, 79, 333, 534
TatI	WGTACW	1 cut(s)	49
TauI	GCSGC	1 cut(s)	470
TfiI	GAWTC	1 cut(s)	117
Tru1I	TTAA	3 cut(s)	284, 336, 462
Tru9I	TTAA	3 cut(s)	284, 336, 462
TscAI	CASTG	1 cut(s)	294
TseFI	GTSAC	1 cut(s)	610
TseI	GCWGC	2 cut(s)	470, 551
Tsp45I	GTSAC	1 cut(s)	610
TspDTI	ATGAA	3 cut(s)	62, 209, 374
TspRI	CASTG	1 cut(s)	294
Van91I	CCANNNNNTGG	1 cut(s)	409
XagI	CCTNNNNNAGG	1 cut(s)	304
XapI	RAATTY	1 cut(s)	79
XhoI	CTCGAG	1 cut(s)	37
XmiI	GTMKAC	1 cut(s)	621
Zsp2I	ATGCAT	1 cut(s)	594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.