Prupe.6G194100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0010520
Physical Location & Seq
Reverse (-)
20123349 .. 20124981
1633 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G194100.1

Sequence Viewer

Length: 678 bp
ATGTCGGCAATCGCATCATCGATTCATCTTAGCCGATGGACGAGCAGTCCTCGCCTTTTTGCTAAGCATCCTGGACCTGGAGCAGTTCAACATTTTTCATCATCGTCAACATGGAAATGCCAACAAGGTTTCAGAACCAACCATGCATTGTTGTCTCTCACAATAGGACAGAGGAGAACTCTTAGCAGCCAACCATGTAGGAATAAGATTGTGTGCAATAGTTCTCCATCACCTGAAGTTCAAAGTCCTTCTGGGGCCCCTTCACACTCTTTGAGAAGCTGGATGATTGGGATGGTATTCTCAGTACTTATACCCTTTTGGAGGCACAAATGGGGGCCCTTGCTACAATTGAAAAAGGAGGTGGACATGATTGTAGACAATGTTGAAGCAGTGGTGGAGGTGGTAGAACAGGTAGCTGAGAAAGTGGAGGAAGTGGCGGATGAAATAGGTGATCGTCTTCCTGATGGAAAGCTCAAGGTTGCAGCTGATTTAGTTGAAAGTTTAGCCAGAGAAGCAGCCAAAGATGCTCATCTTGCAGACCAGCTGATTGAGAAGGCAGAAGAAGTGGAAGATCGGGTGGAAAACTTTTTTGAGTCAGCCATGGATAAAGCAGGAGACTTGACCAAAGTTGTTGCTGATGAACCAAATATTGTACCAGTAGAGAAGAAATTTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

226

Amino Acids

24.89

Weight (kDa)

5.83

Isoelectric Point (pI)

50.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 375
AciI CCGC 1 cut(s) 437
AcsI RAATTY 1 cut(s) 668
AcuI CTGAAG 1 cut(s) 255
AfaI GTAC 2 cut(s) 306, 654
AfiI CCNNNNNNNGG 2 cut(s) 77, 321
AgsI TTSAA 5 cut(s) 89, 242, 352, 386, 497
AhdI GACNNNNNGTC 1 cut(s) 45
AjnI CCWGG 2 cut(s) 70, 76
AluBI AGCT 5 cut(s) 279, 416, 472, 485, 544
AluI AGCT 5 cut(s) 279, 416, 472, 485, 544
Alw26I GTCTC 2 cut(s) 159, 609
AoxI GGCC 2 cut(s) 255, 335
ApaI GGGCCC 2 cut(s) 259, 339
ApeKI GCWGC 3 cut(s) 186, 482, 515
ApoI RAATTY 1 cut(s) 668
AspS9I GGNCC 5 cut(s) 74, 255, 256, 335, 336
AsuHPI GGTGA 2 cut(s) 222, 461
AvaII GGWCC 1 cut(s) 74
BaeGI GKGCMC 2 cut(s) 259, 339
BanII GRGCYC 2 cut(s) 259, 339
BbsI GAAGAC 1 cut(s) 449
BbvI GCAGC 3 cut(s) 198, 494, 527
BccI CCATC 4 cut(s) 30, 235, 286, 458
BciT130I CCWGG 2 cut(s) 72, 78
BcoDI GTCTC 2 cut(s) 159, 609
BisI GCNGC 3 cut(s) 187, 483, 516
BlpI GCTNAGC 1 cut(s) 63
BlsI GCNGC 3 cut(s) 188, 484, 517
BmcAI AGTACT 1 cut(s) 306
Bme1390I CCNGG 2 cut(s) 72, 78
Bme18I GGWCC 1 cut(s) 74
BmeRI GACNNNNNGTC 1 cut(s) 45
BmgT120I GGNCC 5 cut(s) 74, 255, 256, 335, 336
BmiI GGNNCC 5 cut(s) 256, 257, 258, 336, 337
BmrFI CCNGG 2 cut(s) 72, 78
BmsI GCATC 3 cut(s) 23, 76, 514
BpiI GAAGAC 1 cut(s) 449
BplI GAGNNNNNCTC 4 cut(s) 34, 66, 163, 195
BpmI CTGGAG 1 cut(s) 99
Bpu1102I GCTNAGC 1 cut(s) 63
BpuEI CTTGAG 1 cut(s) 458
Bsa29I ATCGAT 1 cut(s) 20
BsaBI GATNNNNATC 1 cut(s) 528
BsaJI CCNNGG 1 cut(s) 600
Bsc4I CCNNNNNNNGG 2 cut(s) 77, 321
Bse1I ACTGG 1 cut(s) 656
Bse8I GATNNNNATC 1 cut(s) 528
BseBI CCWGG 2 cut(s) 72, 78
BseCI ATCGAT 1 cut(s) 20
BseDI CCNNGG 1 cut(s) 600
BseGI GGATG 4 cut(s) 67, 288, 297, 445
BseJI GATNNNNATC 1 cut(s) 528
BseLI CCNNNNNNNGG 2 cut(s) 77, 321
BseMII CTCAG 2 cut(s) 315, 408
BseNI ACTGG 1 cut(s) 656
BseRI GAGGAG 1 cut(s) 187
BseSI GKGCMC 2 cut(s) 259, 339
BseXI GCAGC 3 cut(s) 198, 494, 527
BshFI GGCC 2 cut(s) 257, 337
BshVI ATCGAT 1 cut(s) 20
BslI CCNNNNNNNGG 2 cut(s) 77, 321
BsmAI GTCTC 2 cut(s) 159, 609
BsnI GGCC 2 cut(s) 257, 337
Bsp120I GGGCCC 2 cut(s) 255, 335
Bsp1286I GDGCHC 2 cut(s) 259, 339
Bsp143I GATC 2 cut(s) 451, 571
Bsp1720I GCTNAGC 1 cut(s) 63
Bsp19I CCATGG 1 cut(s) 600
BspACI CCGC 1 cut(s) 437
BspANI GGCC 2 cut(s) 257, 337
BspCNI CTCAG 2 cut(s) 314, 409
BspDI ATCGAT 1 cut(s) 20
BspLI GGNNCC 5 cut(s) 256, 257, 258, 336, 337
BsrI ACTGG 1 cut(s) 656
BssECI CCNNGG 1 cut(s) 600
BssMI GATC 2 cut(s) 451, 571
BssT1I CCWWGG 1 cut(s) 600
Bst2UI CCWGG 2 cut(s) 72, 78
BstDEI CTNAG 5 cut(s) 29, 63, 182, 301, 417
BstDSI CCRYGG 1 cut(s) 600
BstENI CCTNNNNNAGG 1 cut(s) 319
BstF5I GGATG 4 cut(s) 67, 288, 297, 445
BstKTI GATC 2 cut(s) 454, 574
BstMAI GTCTC 2 cut(s) 159, 609
BstMBI GATC 2 cut(s) 451, 571
BstMWI GCNNNNNNNGC 4 cut(s) 51, 512, 524, 533
BstNI CCWGG 2 cut(s) 72, 78
BstSCI CCNGG 2 cut(s) 70, 76
BstSLI GKGCMC 2 cut(s) 259, 339
BstV1I GCAGC 3 cut(s) 198, 494, 527
BstV2I GAAGAC 1 cut(s) 449
Bsu15I ATCGAT 1 cut(s) 20
BsuRI GGCC 2 cut(s) 257, 337
BsuTUI ATCGAT 1 cut(s) 20
BtgI CCRYGG 1 cut(s) 600
BtsCI GGATG 4 cut(s) 67, 288, 297, 445
BtsI GCAGTG 1 cut(s) 396
BtsIMutI CAGTG 1 cut(s) 396
Cfr13I GGNCC 5 cut(s) 74, 255, 256, 335, 336
ClaI ATCGAT 1 cut(s) 20
Csp6I GTAC 2 cut(s) 305, 653
CviAII CATG 5 cut(s) 111, 143, 195, 367, 601
CviQI GTAC 2 cut(s) 305, 653
DdeI CTNAG 5 cut(s) 29, 63, 182, 301, 417
DpnI GATC 2 cut(s) 453, 573
DpnII GATC 2 cut(s) 451, 571
DriI GACNNNNNGTC 1 cut(s) 45
Eam1105I GACNNNNNGTC 1 cut(s) 45
EciI GGCGGA 1 cut(s) 452
Eco130I CCWWGG 1 cut(s) 600
Eco24I GRGCYC 2 cut(s) 259, 339
Eco47I GGWCC 1 cut(s) 74
Eco57I CTGAAG 1 cut(s) 255
EcoNI CCTNNNNNAGG 1 cut(s) 319
EcoO109I RGGNCCY 4 cut(s) 255, 256, 335, 336
EcoRII CCWGG 2 cut(s) 70, 76
EcoT14I CCWWGG 1 cut(s) 600
EcoT22I ATGCAT 1 cut(s) 148
EcoT38I GRGCYC 2 cut(s) 259, 339
ErhI CCWWGG 1 cut(s) 600
FaeI CATG 5 cut(s) 114, 146, 198, 370, 604
FaiI YATR 6 cut(s) 112, 144, 196, 311, 368, 602
FatI CATG 5 cut(s) 110, 142, 194, 366, 600
FblI GTMKAC 1 cut(s) 375
Fnu4HI GCNGC 3 cut(s) 187, 483, 516
FokI GGATG 4 cut(s) 54, 295, 304, 452
FriOI GRGCYC 2 cut(s) 259, 339
Fsp4HI GCNGC 3 cut(s) 187, 483, 516
GluI GCNGC 3 cut(s) 187, 483, 516
GsuI CTGGAG 1 cut(s) 99
HaeIII GGCC 2 cut(s) 257, 337
Hin1II CATG 5 cut(s) 114, 146, 198, 370, 604
HincII GTYRAC 1 cut(s) 108
HindII GTYRAC 1 cut(s) 108
HinfI GANTC 2 cut(s) 22, 593
HphI GGTGA 2 cut(s) 222, 461
Hpy166II GTNNAC 3 cut(s) 108, 364, 376
Hpy188I TCNGA 1 cut(s) 134
Hpy188III TCNNGA 1 cut(s) 461
Hpy8I GTNNAC 3 cut(s) 108, 364, 376
HpyAV CCTTC 3 cut(s) 258, 270, 547
HpyCH4V TGCA 4 cut(s) 146, 216, 482, 536
HpyF10VI GCNNNNNNNGC 4 cut(s) 51, 512, 524, 533
HpyF3I CTNAG 5 cut(s) 29, 63, 182, 301, 417
Hsp92II CATG 5 cut(s) 114, 146, 198, 370, 604
Kzo9I GATC 2 cut(s) 451, 571
LmnI GCTCC 1 cut(s) 80
Lsp1109I GCAGC 3 cut(s) 198, 494, 527
LweI GCATC 3 cut(s) 23, 76, 514
MalI GATC 2 cut(s) 453, 573
MboI GATC 2 cut(s) 451, 571
MboII GAAGA 4 cut(s) 449, 572, 581, 676
MfeI CAATTG 1 cut(s) 347
MhlI GDGCHC 2 cut(s) 259, 339
MluCI AATT 2 cut(s) 347, 668
MlyI GAGTC 1 cut(s) 602
MnlI CCTC 6 cut(s) 60, 165, 315, 352, 391, 421
Mph1103I ATGCAT 1 cut(s) 148
MslI CAYNNNNRTG 1 cut(s) 115
MspA1I CMGCKG 2 cut(s) 485, 544
MspR9I CCNGG 2 cut(s) 72, 78
MunI CAATTG 1 cut(s) 347
MvaI CCWGG 2 cut(s) 72, 78
MwoI GCNNNNNNNGC 4 cut(s) 51, 512, 524, 533
NcoI CCATGG 1 cut(s) 600
NdeII GATC 2 cut(s) 451, 571
NlaIII CATG 5 cut(s) 114, 146, 198, 370, 604
NlaIV GGNNCC 5 cut(s) 256, 257, 258, 336, 337
NsiI ATGCAT 1 cut(s) 148
PfeI GAWTC 1 cut(s) 22
PfoI TCCNGGA 1 cut(s) 70
PkrI GCNGC 3 cut(s) 188, 484, 517
PleI GAGTC 1 cut(s) 601
PpsI GAGTC 1 cut(s) 601
Psp6I CCWGG 2 cut(s) 70, 76
PspGI CCWGG 2 cut(s) 70, 76
PspN4I GGNNCC 5 cut(s) 256, 257, 258, 336, 337
PspOMI GGGCCC 2 cut(s) 255, 335
PspPI GGNCC 5 cut(s) 74, 255, 256, 335, 336
PvuII CAGCTG 2 cut(s) 485, 544
RsaI GTAC 2 cut(s) 306, 654
RsaNI GTAC 2 cut(s) 305, 653
RseI CAYNNNNRTG 1 cut(s) 115
SatI GCNGC 3 cut(s) 187, 483, 516
Sau3AI GATC 2 cut(s) 451, 571
Sau96I GGNCC 5 cut(s) 74, 255, 256, 335, 336
ScaI AGTACT 1 cut(s) 306
SchI GAGTC 1 cut(s) 602
ScrFI CCNGG 2 cut(s) 72, 78
SduI GDGCHC 2 cut(s) 259, 339
SfaNI GCATC 3 cut(s) 23, 76, 514
SinI GGWCC 1 cut(s) 74
SmiMI CAYNNNNRTG 1 cut(s) 115
SmlI CTYRAG 1 cut(s) 473
SmoI CTYRAG 1 cut(s) 473
Sse9I AATT 2 cut(s) 347, 668
SsiI CCGC 1 cut(s) 437
SspI AATATT 1 cut(s) 649
StyD4I CCNGG 2 cut(s) 70, 76
StyI CCWWGG 1 cut(s) 600
TaqI TCGA 1 cut(s) 20
TasI AATT 2 cut(s) 347, 668
TatI WGTACW 1 cut(s) 304
TfiI GAWTC 1 cut(s) 22
TscAI CASTG 1 cut(s) 396
TseI GCWGC 3 cut(s) 186, 482, 515
TspDTI ATGAA 4 cut(s) 14, 87, 456, 654
TspRI CASTG 1 cut(s) 396
VpaK11BI GGWCC 1 cut(s) 74
XagI CCTNNNNNAGG 1 cut(s) 319
XapI RAATTY 1 cut(s) 668
XmiI GTMKAC 1 cut(s) 375
ZrmI AGTACT 1 cut(s) 306
Zsp2I ATGCAT 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.