Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0010520

Physical Location & Seq

Genomic Coordinates Forward (+)

22737634 .. 22738814

Gene Structure 1181 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G017990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGTCAACAATCACGTCGTCCATCGATCTTGGGAGCTCGAGAAGTCGTGTACTTGTAATTCCTCAGAGAGTTCATCGGAATTTGTTTTCTATAACGGCAATAAAACCCCCCCAGCAGGGATTCACAGCCAATCCTTTGTTGTTGTCTCTCTCAATAGGCCAGAGGAGTAGTGCTCTTAGCAGAAGCGATGCCAAGATGAACAAGATTGTATGCAATGTTTCAGGAGCTCCAACTCCTTCTGGAGCACCTTCACACTCTTGGAGGGGCTGGATGATAGGGATGTTATTAACAGTGGTTATACCCTTTTGGAGGCACAAATGGGGGCCCTTGCAAATAATTAAAAATAAGGTGGACATGGTAATGAACACAGTTGAAGTAGTGGCGGAGGTGGTCGAAACGGTGGCCCATAAAGTGGAGGAGGTGGCGGATGGAATAGCTGATAAACTTCCTGAAGATGGAAAGCTTAAAGCGGCAGTTGAAACAGTTGAAGCCATAGCTAAAGAAACAGCCAAAGATGCTCACATGGTGGATAAGCTAATTGAGAATGTTGAGGCAGCGGAAGATAAGGTTGAAGACTTCTTTGAGTCGGCTATGCATGGAGCTGGAGATCAGGTGACCAAAGTCGACGACGATGGTGGTGAACAAGGAAATGTAGAAGAAACGAAAATCGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

224

Amino Acids

24.31

Weight (kDa)

5.32

Isoelectric Point (pI)

41.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010520)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20180 FvH4_1g20180 FvH4_1g20180
malus_domestica	MD15G1317500.v1.1 MD15G1317700.v1.1
prunus_persica	Prupe.6G194100_v2.0.a1 Prupe.6G194200_v2.0.a1
pyrus_communis	pycom15g28020 pycom15g28030
rosa_chinensis	RchiOBHm_Chr2g0112251
rosa_laevigata	RLG00000017963
rosa_multiflora	Rmu_sc0001386.1_g000027 Rmu_sc0004467.1_g000019
rosa_roxburghii	Rroxscaffold_2G00131600
rosa_rugosa	Rorug02G0179400 Rorug02G0179500
rosa_samantha	Rh2AG231800 Rh2BG245300 Rh2CG236200 Rh2DG239700
rosa_wichuraiana	Rw2G017990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	412
AccI	GTMKAC	1 cut(s)	624
AciI	CCGC	4 cut(s)	383, 425, 470, 557
AcsI	RAATTY	1 cut(s)	79
AcuI	CTGAAG	1 cut(s)	471
AdeI	CACNNNGTG	1 cut(s)	526
AfaI	GTAC	1 cut(s)	51
AfiI	CCNNNNNNNGG	5 cut(s)	115, 116, 309, 412, 455
AgsI	TTSAA	4 cut(s)	374, 479, 488, 572
AjiI	CACGTC	1 cut(s)	15
AluBI	AGCT	7 cut(s)	36, 227, 437, 463, 497, 535, 602
AluI	AGCT	7 cut(s)	36, 227, 437, 463, 497, 535, 602
Alw21I	GWGCWC	4 cut(s)	38, 175, 229, 247
Alw26I	GTCTC	1 cut(s)	150
Ama87I	CYCGRG	1 cut(s)	37
AoxI	GGCC	3 cut(s)	157, 323, 402
ApaI	GGGCCC	1 cut(s)	327
ApeKI	GCWGC	1 cut(s)	554
ApoI	RAATTY	1 cut(s)	79
AspS9I	GGNCC	3 cut(s)	323, 324, 403
AsuHPI	GGTGA	2 cut(s)	625, 650
AvaI	CYCGRG	1 cut(s)	37
BaeGI	GKGCMC	1 cut(s)	327
BanII	GRGCYC	3 cut(s)	38, 229, 327
BbsI	GAAGAC	1 cut(s)	579
Bbv12I	GWGCWC	4 cut(s)	38, 175, 229, 247
BbvI	GCAGC	1 cut(s)	566
BccI	CCATC	4 cut(s)	29, 422, 449, 626
BceAI	ACGGC	1 cut(s)	111
BcoDI	GTCTC	1 cut(s)	150
BisI	GCNGC	2 cut(s)	471, 555
BlsI	GCNGC	2 cut(s)	472, 556
BmeT110I	CYCGRG	1 cut(s)	37
BmgBI	CACGTC	1 cut(s)	15
BmgT120I	GGNCC	3 cut(s)	323, 324, 403
BmiI	GGNNCC	2 cut(s)	324, 325
BmsI	GCATC	2 cut(s)	178, 505
BoxI	GACNNNNGTC	1 cut(s)	620
BpiI	GAAGAC	1 cut(s)	579
BplI	GAGNNNNNCTC	2 cut(s)	157, 189
BpmI	CTGGAG	2 cut(s)	261, 624
Bsa29I	ATCGAT	1 cut(s)	24
BsaXI	ACNNNNNCTCC	2 cut(s)	597, 627
Bsc4I	CCNNNNNNNGG	5 cut(s)	115, 116, 309, 412, 455
Bse3DI	GCAATG	1 cut(s)	220
BseCI	ATCGAT	1 cut(s)	24
BseGI	GGATG	3 cut(s)	276, 285, 433
BseLI	CCNNNNNNNGG	5 cut(s)	115, 116, 309, 412, 455
BseMI	GCAATG	1 cut(s)	220
BseMII	CTCAG	1 cut(s)	77
BseRI	GAGGAG	2 cut(s)	178, 431
BseSI	GKGCMC	1 cut(s)	327
BseXI	GCAGC	1 cut(s)	566
BseYI	CCCAGC	1 cut(s)	111
BshFI	GGCC	3 cut(s)	159, 325, 404
BshVI	ATCGAT	1 cut(s)	24
BsiHKAI	GWGCWC	4 cut(s)	38, 175, 229, 247
BsiHKCI	CYCGRG	1 cut(s)	37
BslI	CCNNNNNNNGG	5 cut(s)	115, 116, 309, 412, 455
BsmAI	GTCTC	1 cut(s)	150
BsnI	GGCC	3 cut(s)	159, 325, 404
BsoBI	CYCGRG	1 cut(s)	37
Bsp120I	GGGCCC	1 cut(s)	323
Bsp1286I	GDGCHC	5 cut(s)	38, 175, 229, 247, 327
Bsp143I	GATC	2 cut(s)	25, 607
BspACI	CCGC	4 cut(s)	383, 425, 470, 557
BspANI	GGCC	3 cut(s)	159, 325, 404
BspCNI	CTCAG	1 cut(s)	76
BspDI	ATCGAT	1 cut(s)	24
BspLI	GGNNCC	2 cut(s)	324, 325
BsrDI	GCAATG	1 cut(s)	220
BssMI	GATC	2 cut(s)	25, 607
Bst4CI	ACNGT	4 cut(s)	292, 370, 400, 484
BstDEI	CTNAG	2 cut(s)	63, 176
BstEII	GGTNACC	1 cut(s)	613
BstENI	CCTNNNNNAGG	1 cut(s)	307
BstF5I	GGATG	3 cut(s)	276, 285, 433
BstKTI	GATC	2 cut(s)	28, 610
BstMAI	GTCTC	1 cut(s)	150
BstMBI	GATC	2 cut(s)	25, 607
BstMWI	GCNNNNNNNGC	1 cut(s)	515
BstPAI	GACNNNNGTC	1 cut(s)	620
BstPI	GGTNACC	1 cut(s)	613
BstSLI	GKGCMC	1 cut(s)	327
BstV1I	GCAGC	1 cut(s)	566
BstV2I	GAAGAC	1 cut(s)	579
Bsu15I	ATCGAT	1 cut(s)	24
BsuRI	GGCC	3 cut(s)	159, 325, 404
BsuTUI	ATCGAT	1 cut(s)	24
BtgZI	GCGATG	1 cut(s)	201
BtrI	CACGTC	1 cut(s)	15
BtsCI	GGATG	3 cut(s)	276, 285, 433
BtsIMutI	CAGTG	1 cut(s)	297
Cfr13I	GGNCC	3 cut(s)	323, 324, 403
ClaI	ATCGAT	1 cut(s)	24
Csp6I	GTAC	1 cut(s)	50
CviAII	CATG	3 cut(s)	355, 523, 596
CviQI	GTAC	1 cut(s)	50
DdeI	CTNAG	2 cut(s)	63, 176
DpnI	GATC	2 cut(s)	27, 609
DpnII	GATC	2 cut(s)	25, 607
DraIII	CACNNNGTG	1 cut(s)	526
EciI	GGCGGA	2 cut(s)	398, 440
Ecl136II	GAGCTC	2 cut(s)	36, 227
Eco24I	GRGCYC	3 cut(s)	38, 229, 327
Eco53kI	GAGCTC	2 cut(s)	36, 227
Eco57I	CTGAAG	1 cut(s)	471
Eco88I	CYCGRG	1 cut(s)	37
Eco91I	GGTNACC	1 cut(s)	613
EcoICRI	GAGCTC	2 cut(s)	36, 227
EcoNI	CCTNNNNNAGG	1 cut(s)	307
EcoO109I	RGGNCCY	2 cut(s)	323, 324
EcoO65I	GGTNACC	1 cut(s)	613
EcoT22I	ATGCAT	1 cut(s)	597
EcoT38I	GRGCYC	3 cut(s)	38, 229, 327
FaeI	CATG	3 cut(s)	358, 526, 599
FaiI	YATR	9 cut(s)	92, 211, 299, 356, 408, 494, 524, 593, 597
FatI	CATG	3 cut(s)	354, 522, 595
FblI	GTMKAC	1 cut(s)	624
Fnu4HI	GCNGC	2 cut(s)	471, 555
FokI	GGATG	3 cut(s)	283, 292, 440
FriOI	GRGCYC	3 cut(s)	38, 229, 327
Fsp4HI	GCNGC	2 cut(s)	471, 555
GluI	GCNGC	2 cut(s)	471, 555
GsaI	CCCAGC	1 cut(s)	115
GsuI	CTGGAG	2 cut(s)	261, 624
HaeIII	GGCC	3 cut(s)	159, 325, 404
Hin1II	CATG	3 cut(s)	358, 526, 599
HincII	GTYRAC	2 cut(s)	6, 625
HindII	GTYRAC	2 cut(s)	6, 625
HindIII	AAGCTT	1 cut(s)	461
HinfI	GANTC	2 cut(s)	120, 584
HphI	GGTGA	2 cut(s)	625, 650
Hpy166II	GTNNAC	5 cut(s)	6, 50, 352, 625, 641
Hpy188I	TCNGA	2 cut(s)	66, 78
Hpy188III	TCNNGA	4 cut(s)	39, 222, 240, 449
Hpy8I	GTNNAC	5 cut(s)	6, 50, 352, 625, 641
Hpy99I	CGWCG	3 cut(s)	19, 629, 632
HpyAV	CCTTC	2 cut(s)	246, 258
HpyCH4III	ACNGT	4 cut(s)	292, 370, 400, 484
HpyCH4IV	ACGT	1 cut(s)	14
HpyCH4V	TGCA	3 cut(s)	213, 331, 595
HpyF10VI	GCNNNNNNNGC	1 cut(s)	515
HpyF3I	CTNAG	2 cut(s)	63, 176
HpySE526I	ACGT	1 cut(s)	14
Hsp92II	CATG	3 cut(s)	358, 526, 599
Kzo9I	GATC	2 cut(s)	25, 607
LmnI	GCTCC	5 cut(s)	33, 224, 232, 242, 599
LpnPI	CCDG	9 cut(s)	101, 125, 173, 207, 225, 253, 462, 588, 596
Lsp1109I	GCAGC	1 cut(s)	566
LweI	GCATC	2 cut(s)	178, 505
MaeII	ACGT	1 cut(s)	14
MaeIII	GTNAC	1 cut(s)	613
MalI	GATC	2 cut(s)	27, 609
MboI	GATC	2 cut(s)	25, 607
MboII	GAAGA	4 cut(s)	464, 572, 584, 668
MhlI	GDGCHC	5 cut(s)	38, 175, 229, 247, 327
MluCI	AATT	4 cut(s)	57, 79, 336, 537
MlyI	GAGTC	1 cut(s)	593
MmeI	TCCRAC	1 cut(s)	254
MnlI	CCTC	8 cut(s)	72, 156, 255, 303, 379, 409, 412, 544
Mph1103I	ATGCAT	1 cut(s)	597
MseI	TTAA	3 cut(s)	287, 339, 465
MslI	CAYNNNNRTG	1 cut(s)	359
MspA1I	CMGCKG	1 cut(s)	557
MwoI	GCNNNNNNNGC	1 cut(s)	515
NdeII	GATC	2 cut(s)	25, 607
NlaIII	CATG	3 cut(s)	358, 526, 599
NlaIV	GGNNCC	2 cut(s)	324, 325
NmuCI	GTSAC	1 cut(s)	613
NsiI	ATGCAT	1 cut(s)	597
PaeR7I	CTCGAG	1 cut(s)	37
PfeI	GAWTC	1 cut(s)	120
PflMI	CCANNNNNTGG	1 cut(s)	412
PkrI	GCNGC	2 cut(s)	472, 556
PleI	GAGTC	1 cut(s)	592
PpsI	GAGTC	1 cut(s)	592
PshAI	GACNNNNGTC	1 cut(s)	620
Psp124BI	GAGCTC	2 cut(s)	38, 229
PspEI	GGTNACC	1 cut(s)	613
PspFI	CCCAGC	1 cut(s)	111
PspN4I	GGNNCC	2 cut(s)	324, 325
PspOMI	GGGCCC	1 cut(s)	323
PspPI	GGNCC	3 cut(s)	323, 324, 403
RsaI	GTAC	1 cut(s)	51
RsaNI	GTAC	1 cut(s)	50
RseI	CAYNNNNRTG	1 cut(s)	359
SacI	GAGCTC	2 cut(s)	38, 229
SalI	GTCGAC	1 cut(s)	623
SaqAI	TTAA	3 cut(s)	287, 339, 465
SatI	GCNGC	2 cut(s)	471, 555
Sau3AI	GATC	2 cut(s)	25, 607
Sau96I	GGNCC	3 cut(s)	323, 324, 403
SchI	GAGTC	1 cut(s)	593
SduI	GDGCHC	5 cut(s)	38, 175, 229, 247, 327
SfaNI	GCATC	2 cut(s)	178, 505
Sfr274I	CTCGAG	1 cut(s)	37
SlaI	CTCGAG	1 cut(s)	37
SmiMI	CAYNNNNRTG	1 cut(s)	359
SmlI	CTYRAG	1 cut(s)	37
SmoI	CTYRAG	1 cut(s)	37
Sse9I	AATT	4 cut(s)	57, 79, 336, 537
SsiI	CCGC	4 cut(s)	383, 425, 470, 557
SstI	GAGCTC	2 cut(s)	38, 229
TaaI	ACNGT	4 cut(s)	292, 370, 400, 484
TaiI	ACGT	1 cut(s)	17
TaqI	TCGA	5 cut(s)	24, 38, 393, 624, 669
TasI	AATT	4 cut(s)	57, 79, 336, 537
TatI	WGTACW	1 cut(s)	49
TauI	GCSGC	1 cut(s)	473
TfiI	GAWTC	1 cut(s)	120
Tru1I	TTAA	3 cut(s)	287, 339, 465
Tru9I	TTAA	3 cut(s)	287, 339, 465
TscAI	CASTG	1 cut(s)	297
TseFI	GTSAC	1 cut(s)	613
TseI	GCWGC	1 cut(s)	554
Tsp45I	GTSAC	1 cut(s)	613
TspDTI	ATGAA	3 cut(s)	62, 212, 377
TspRI	CASTG	1 cut(s)	297
Van91I	CCANNNNNTGG	1 cut(s)	412
XagI	CCTNNNNNAGG	1 cut(s)	307
XapI	RAATTY	1 cut(s)	79
XhoI	CTCGAG	1 cut(s)	37
XmiI	GTMKAC	1 cut(s)	624
Zsp2I	ATGCAT	1 cut(s)	597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.