Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0010520

Physical Location & Seq

Genomic Coordinates Reverse (-)

20126245 .. 20127536

Gene Structure 1292 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G194200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGTCAACAATCACATCGGTTGATCTTTGCCGGTCTAGTAGCCGCCTTTTCGTCAAGCATCCTGGAGTGTTTCAGCATTTCTCATCAGCAACATTGAAATTCCAACAAGGTTTCAGAACCAACCATGAATTTTTGTCTCTCACAATAGGGCAGAGGAATGTTTTTAGCAGGCAGCCATGTAGGAATAAGATTATGTGCAGTAGTTCTCCGTTACCTGGAGCTCCAGGCCCTTCACACTCCTGGAAAGGATGGATGATAGGGATTATATTATCAGTAATTATACCCTTTTGGAGGAACAAATGGGCGCCCTTGCTAGCGTTGAAAAAGGAGGTGGACATGATTGTAGACACAGTTGAGGCAGTGGTGGAGGTGGCAGAGCAGGTAGCTGAGAAAGTGGAGGAAGTGGCAGATGATATAGGTGATCATCTTCCTGATGGAAAGCTTAAGGATGCACTTGAAGCAGTTGAAAGTATAGCCAAAGAAGCAGCCAAAGATGCTCACCTTGCAGACCAGCTAATTGAGAAGGCAGAAGAAGTGGAAGATCGGGTAGAAGACTTCTTTGAGTCAGCCGTGGATCAAGCAGGGAATGTGATCACCAAAGATGTTGGTGATGAACAAAATGCACAAGTAGAAAAGAAAATCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

216

Amino Acids

23.87

Weight (kDa)

5.1

Isoelectric Point (pI)

32.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010520)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20180 FvH4_1g20180 FvH4_1g20180
malus_domestica	MD15G1317500.v1.1 MD15G1317700.v1.1
prunus_persica	Prupe.6G194100_v2.0.a1 Prupe.6G194200_v2.0.a1
pyrus_communis	pycom15g28020 pycom15g28030
rosa_chinensis	RchiOBHm_Chr2g0112251
rosa_laevigata	RLG00000017963
rosa_multiflora	Rmu_sc0001386.1_g000027 Rmu_sc0004467.1_g000019
rosa_roxburghii	Rroxscaffold_2G00131600
rosa_rugosa	Rorug02G0179400 Rorug02G0179500
rosa_samantha	Rh2AG231800 Rh2BG245300 Rh2CG236200 Rh2DG239700
rosa_wichuraiana	Rw2G017990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	370
AccB1I	GGYRCC	1 cut(s)	304
AccI	GTMKAC	1 cut(s)	345
AciI	CCGC	1 cut(s)	43
AclWI	GGATC	1 cut(s)	582
AcsI	RAATTY	2 cut(s)	98, 128
AcyI	GRCGYC	1 cut(s)	305
AfiI	CCNNNNNNNGG	2 cut(s)	215, 291
AflII	CTTAAG	1 cut(s)	443
AgsI	TTSAA	4 cut(s)	97, 322, 458, 467
AjnI	CCWGG	4 cut(s)	61, 214, 223, 239
AluBI	AGCT	4 cut(s)	221, 386, 442, 514
AluI	AGCT	4 cut(s)	221, 386, 442, 514
Alw21I	GWGCWC	1 cut(s)	223
Alw26I	GTCTC	1 cut(s)	141
AlwI	GGATC	1 cut(s)	582
AoxI	GGCC	1 cut(s)	226
ApeKI	GCWGC	2 cut(s)	172, 485
ApoI	RAATTY	2 cut(s)	98, 128
AspLEI	GCGC	1 cut(s)	307
AspS9I	GGNCC	1 cut(s)	227
AsuHPI	GGTGA	4 cut(s)	431, 491, 586, 620
AsuNHI	GCTAGC	1 cut(s)	313
BanI	GGYRCC	1 cut(s)	304
BanII	GRGCYC	1 cut(s)	223
BbsI	GAAGAC	1 cut(s)	558
Bbv12I	GWGCWC	1 cut(s)	223
BbvI	GCAGC	2 cut(s)	184, 497
BccI	CCATC	2 cut(s)	243, 428
BceAI	ACGGC	1 cut(s)	554
BciT130I	CCWGG	4 cut(s)	63, 216, 225, 241
BclI	TGATCA	2 cut(s)	421, 591
BcoDI	GTCTC	1 cut(s)	141
BfaI	CTAG	2 cut(s)	36, 314
BfoI	RGCGCY	1 cut(s)	308
BfrI	CTTAAG	1 cut(s)	443
BfuAI	ACCTGC	1 cut(s)	370
BisI	GCNGC	3 cut(s)	43, 173, 486
BlsI	GCNGC	3 cut(s)	44, 174, 487
Bme1390I	CCNGG	4 cut(s)	63, 216, 225, 241
BmgT120I	GGNCC	1 cut(s)	227
BmiI	GGNNCC	1 cut(s)	306
BmrFI	CCNGG	4 cut(s)	63, 216, 225, 241
BmsI	GCATC	3 cut(s)	67, 439, 484
BmtI	GCTAGC	1 cut(s)	317
BpiI	GAAGAC	1 cut(s)	558
BpmI	CTGGAG	3 cut(s)	84, 207, 237
BsaHI	GRCGYC	1 cut(s)	305
BsaJI	CCNNGG	1 cut(s)	570
Bsc4I	CCNNNNNNNGG	2 cut(s)	215, 291
Bse118I	RCCGGY	1 cut(s)	30
Bse1I	ACTGG	1 cut(s)	643
BseBI	CCWGG	4 cut(s)	63, 216, 225, 241
BseDI	CCNNGG	1 cut(s)	570
BseGI	GGATG	4 cut(s)	58, 254, 258, 454
BseLI	CCNNNNNNNGG	2 cut(s)	215, 291
BseMII	CTCAG	1 cut(s)	378
BseNI	ACTGG	1 cut(s)	643
BseXI	GCAGC	2 cut(s)	184, 497
BsgI	GTGCAG	1 cut(s)	217
BshFI	GGCC	1 cut(s)	228
BshNI	GGYRCC	1 cut(s)	304
BsiHKAI	GWGCWC	1 cut(s)	223
BsiSI	CCGG	1 cut(s)	31
BslI	CCNNNNNNNGG	2 cut(s)	215, 291
BsmAI	GTCTC	1 cut(s)	141
BsnI	GGCC	1 cut(s)	228
Bsp1286I	GDGCHC	1 cut(s)	223
Bsp143I	GATC	5 cut(s)	22, 421, 541, 574, 591
BspACI	CCGC	1 cut(s)	43
BspANI	GGCC	1 cut(s)	228
BspCNI	CTCAG	1 cut(s)	379
BspLI	GGNNCC	1 cut(s)	306
BspMI	ACCTGC	1 cut(s)	370
BspOI	GCTAGC	1 cut(s)	317
BspPI	GGATC	1 cut(s)	582
BspT107I	GGYRCC	1 cut(s)	304
BspTI	CTTAAG	1 cut(s)	443
BsrFI	RCCGGY	1 cut(s)	30
BsrI	ACTGG	1 cut(s)	643
BssAI	RCCGGY	1 cut(s)	30
BssECI	CCNNGG	1 cut(s)	570
BssMI	GATC	5 cut(s)	22, 421, 541, 574, 591
BssNI	GRCGYC	1 cut(s)	305
Bst2UI	CCWGG	4 cut(s)	63, 216, 225, 241
Bst4CI	ACNGT	1 cut(s)	352
BstACI	GRCGYC	1 cut(s)	305
BstAFI	CTTAAG	1 cut(s)	443
BstC8I	GCNNGC	2 cut(s)	170, 315
BstDEI	CTNAG	1 cut(s)	387
BstDSI	CCRYGG	1 cut(s)	570
BstENI	CCTNNNNNAGG	1 cut(s)	289
BstF5I	GGATG	4 cut(s)	58, 254, 258, 454
BstH2I	RGCGCY	1 cut(s)	308
BstHHI	GCGC	1 cut(s)	307
BstKTI	GATC	5 cut(s)	25, 424, 544, 577, 594
BstMAI	GTCTC	1 cut(s)	141
BstMBI	GATC	5 cut(s)	22, 421, 541, 574, 591
BstMWI	GCNNNNNNNGC	4 cut(s)	458, 482, 494, 503
BstNI	CCWGG	4 cut(s)	63, 216, 225, 241
BstSCI	CCNGG	4 cut(s)	61, 214, 223, 239
BstV1I	GCAGC	2 cut(s)	184, 497
BstV2I	GAAGAC	1 cut(s)	558
BsuRI	GGCC	1 cut(s)	228
BtgI	CCRYGG	1 cut(s)	570
BtsCI	GGATG	4 cut(s)	58, 254, 258, 454
BtsI	GCAGTG	1 cut(s)	366
BtsIMutI	CAGTG	1 cut(s)	366
BveI	ACCTGC	1 cut(s)	370
Cac8I	GCNNGC	2 cut(s)	170, 315
CfoI	GCGC	1 cut(s)	307
Cfr10I	RCCGGY	1 cut(s)	30
Cfr13I	GGNCC	1 cut(s)	227
CviAII	CATG	3 cut(s)	125, 177, 337
DdeI	CTNAG	1 cut(s)	387
DinI	GGCGCC	1 cut(s)	306
DpnI	GATC	5 cut(s)	24, 423, 543, 576, 593
DpnII	GATC	5 cut(s)	22, 421, 541, 574, 591
Ecl136II	GAGCTC	1 cut(s)	221
Eco24I	GRGCYC	1 cut(s)	223
Eco53kI	GAGCTC	1 cut(s)	221
EcoICRI	GAGCTC	1 cut(s)	221
EcoNI	CCTNNNNNAGG	1 cut(s)	289
EcoO109I	RGGNCCY	1 cut(s)	227
EcoRII	CCWGG	4 cut(s)	61, 214, 223, 239
EcoT38I	GRGCYC	1 cut(s)	223
EgeI	GGCGCC	1 cut(s)	306
EheI	GGCGCC	1 cut(s)	306
FaeI	CATG	3 cut(s)	128, 180, 340
FaiI	YATR	8 cut(s)	126, 178, 194, 266, 281, 338, 416, 473
FatI	CATG	3 cut(s)	124, 176, 336
FbaI	TGATCA	2 cut(s)	421, 591
FblI	GTMKAC	1 cut(s)	345
Fnu4HI	GCNGC	3 cut(s)	43, 173, 486
FokI	GGATG	4 cut(s)	45, 261, 265, 461
FriOI	GRGCYC	1 cut(s)	223
Fsp4HI	GCNGC	3 cut(s)	43, 173, 486
FspBI	CTAG	2 cut(s)	36, 314
GlaI	GCGC	1 cut(s)	306
GluI	GCNGC	3 cut(s)	43, 173, 486
GsuI	CTGGAG	3 cut(s)	84, 207, 237
HaeII	RGCGCY	1 cut(s)	308
HaeIII	GGCC	1 cut(s)	228
HapII	CCGG	1 cut(s)	31
HhaI	GCGC	1 cut(s)	307
Hin1I	GRCGYC	1 cut(s)	305
Hin1II	CATG	3 cut(s)	128, 180, 340
Hin6I	GCGC	1 cut(s)	305
HinP1I	GCGC	1 cut(s)	305
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HindIII	AAGCTT	1 cut(s)	440
HinfI	GANTC	1 cut(s)	563
HpaII	CCGG	1 cut(s)	31
HphI	GGTGA	4 cut(s)	431, 491, 586, 620
Hpy166II	GTNNAC	3 cut(s)	6, 334, 346
Hpy188I	TCNGA	1 cut(s)	116
Hpy188III	TCNNGA	1 cut(s)	431
Hpy8I	GTNNAC	3 cut(s)	6, 334, 346
HpyAV	CCTTC	2 cut(s)	240, 517
HpyCH4III	ACNGT	1 cut(s)	352
HpyCH4V	TGCA	4 cut(s)	198, 452, 506, 623
HpyF10VI	GCNNNNNNNGC	4 cut(s)	458, 482, 494, 503
HpyF3I	CTNAG	1 cut(s)	387
Hsp92I	GRCGYC	1 cut(s)	305
Hsp92II	CATG	3 cut(s)	128, 180, 340
HspAI	GCGC	1 cut(s)	305
KasI	GGCGCC	1 cut(s)	304
Ksp22I	TGATCA	2 cut(s)	421, 591
Kzo9I	GATC	5 cut(s)	22, 421, 541, 574, 591
LmnI	GCTCC	2 cut(s)	218, 226
Lsp1109I	GCAGC	2 cut(s)	184, 497
LweI	GCATC	3 cut(s)	67, 439, 484
MaeI	CTAG	2 cut(s)	36, 314
MaeIII	GTNAC	1 cut(s)	210
MalI	GATC	5 cut(s)	24, 423, 543, 576, 593
MboI	GATC	5 cut(s)	22, 421, 541, 574, 591
MboII	GAAGA	4 cut(s)	419, 542, 551, 563
MhlI	GDGCHC	1 cut(s)	223
MluCI	AATT	4 cut(s)	98, 128, 276, 516
Mly113I	GGCGCC	1 cut(s)	305
MlyI	GAGTC	1 cut(s)	572
MmeI	TCCRAC	1 cut(s)	127
MnlI	CCTC	6 cut(s)	147, 285, 322, 349, 361, 391
MseI	TTAA	1 cut(s)	444
MspCI	CTTAAG	1 cut(s)	443
MspI	CCGG	1 cut(s)	31
MspR9I	CCNGG	4 cut(s)	63, 216, 225, 241
MvaI	CCWGG	4 cut(s)	63, 216, 225, 241
MwoI	GCNNNNNNNGC	4 cut(s)	458, 482, 494, 503
NarI	GGCGCC	1 cut(s)	305
NdeII	GATC	5 cut(s)	22, 421, 541, 574, 591
NheI	GCTAGC	1 cut(s)	313
NlaIII	CATG	3 cut(s)	128, 180, 340
NlaIV	GGNNCC	1 cut(s)	306
PfoI	TCCNGGA	2 cut(s)	61, 239
PkrI	GCNGC	3 cut(s)	44, 174, 487
PleI	GAGTC	1 cut(s)	571
PluTI	GGCGCC	1 cut(s)	308
PpsI	GAGTC	1 cut(s)	571
Psp124BI	GAGCTC	1 cut(s)	223
Psp6I	CCWGG	4 cut(s)	61, 214, 223, 239
PspGI	CCWGG	4 cut(s)	61, 214, 223, 239
PspN4I	GGNNCC	1 cut(s)	306
PspPI	GGNCC	1 cut(s)	227
SacI	GAGCTC	1 cut(s)	223
SaqAI	TTAA	1 cut(s)	444
SatI	GCNGC	3 cut(s)	43, 173, 486
Sau3AI	GATC	5 cut(s)	22, 421, 541, 574, 591
Sau96I	GGNCC	1 cut(s)	227
SchI	GAGTC	1 cut(s)	572
ScrFI	CCNGG	4 cut(s)	63, 216, 225, 241
SduI	GDGCHC	1 cut(s)	223
SfaNI	GCATC	3 cut(s)	67, 439, 484
SfoI	GGCGCC	1 cut(s)	306
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
Sse9I	AATT	4 cut(s)	98, 128, 276, 516
SsiI	CCGC	1 cut(s)	43
SspDI	GGCGCC	1 cut(s)	304
SspMI	CTAG	2 cut(s)	36, 314
SstI	GAGCTC	1 cut(s)	223
StyD4I	CCNGG	4 cut(s)	61, 214, 223, 239
TaaI	ACNGT	1 cut(s)	352
TasI	AATT	4 cut(s)	98, 128, 276, 516
TauI	GCSGC	1 cut(s)	45
Tru1I	TTAA	1 cut(s)	444
Tru9I	TTAA	1 cut(s)	444
TscAI	CASTG	1 cut(s)	366
TseI	GCWGC	2 cut(s)	172, 485
TspDTI	ATGAA	2 cut(s)	141, 627
TspGWI	ACGGA	1 cut(s)	198
TspRI	CASTG	1 cut(s)	366
Vha464I	CTTAAG	1 cut(s)	443
XagI	CCTNNNNNAGG	1 cut(s)	289
XapI	RAATTY	2 cut(s)	98, 128
XmiI	GTMKAC	1 cut(s)	345
XspI	CTAG	2 cut(s)	36, 314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.