Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0010520

Physical Location & Seq

Genomic Coordinates Forward (+)

24965872 .. 24968436

Gene Structure 2565 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG231800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGATAGGGATGTTATTAACAGTGGTTATACCCTTTTGGAGGCACAAATGGGGGCCCTTCCAAATAATTAAAAGTAACTATACTCGGAGCTTACATTATTGTCAGCTATGGATGATTTACCTCATGTCTCAAGAGTTAAGATTTGAATTATTTGATTGTGTAGATAAGGTGGACATGGTAATGAACACAGTTGAAGTAGTGGCGGAGGTGGTCGAAACGGTGGCCCATAAAGTGGAGGAGGTGGCGGATGGAATAGCTGATAAACTTCCTGAAGATGGAAAGCTTAAAGCGGCAGTTGAAACAGTTGAAGCCATAGCTAAAGAAACAGCCAAAGATGCTCACATGGTGGATAAGCTAATTGAGAGTGTTGAGGCAGCGGAAGATAAGGTTGAAGACTTCTTTGAGTCGGCCATGCATGGAGCTGGAGATCAGGTGACCAAAGTCGACGACGGTGGTGGTGAACAAGGAAATGTAGAAGAAAAGAAAATCGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

164

Amino Acids

18.45

Weight (kDa)

4.63

Isoelectric Point (pI)

34.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010520)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20180 FvH4_1g20180 FvH4_1g20180
malus_domestica	MD15G1317500.v1.1 MD15G1317700.v1.1
prunus_persica	Prupe.6G194100_v2.0.a1 Prupe.6G194200_v2.0.a1
pyrus_communis	pycom15g28020 pycom15g28030
rosa_chinensis	RchiOBHm_Chr2g0112251
rosa_laevigata	RLG00000017963
rosa_multiflora	Rmu_sc0001386.1_g000027 Rmu_sc0004467.1_g000019
rosa_roxburghii	Rroxscaffold_2G00131600
rosa_rugosa	Rorug02G0179400 Rorug02G0179500
rosa_samantha	Rh2AG231800 Rh2BG245300 Rh2CG236200 Rh2DG239700
rosa_wichuraiana	Rw2G017990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	232
AccI	GTMKAC	1 cut(s)	444
AciI	CCGC	4 cut(s)	203, 245, 290, 377
AcoI	YGGCCR	1 cut(s)	408
AcuI	CTGAAG	1 cut(s)	291
AdeI	CACNNNGTG	1 cut(s)	346
AfiI	CCNNNNNNNGG	3 cut(s)	39, 232, 275
AgsI	TTSAA	5 cut(s)	146, 194, 299, 308, 392
AluBI	AGCT	7 cut(s)	90, 106, 257, 283, 317, 355, 422
AluI	AGCT	7 cut(s)	90, 106, 257, 283, 317, 355, 422
Alw26I	GTCTC	1 cut(s)	132
AoxI	GGCC	3 cut(s)	53, 222, 408
ApaI	GGGCCC	1 cut(s)	57
ApeKI	GCWGC	1 cut(s)	374
AspS9I	GGNCC	3 cut(s)	53, 54, 223
AsuHPI	GGTGA	2 cut(s)	445, 470
BaeGI	GKGCMC	1 cut(s)	57
BanII	GRGCYC	1 cut(s)	57
BbsI	GAAGAC	1 cut(s)	399
BbvI	GCAGC	1 cut(s)	386
BccI	CCATC	2 cut(s)	242, 269
BcoDI	GTCTC	1 cut(s)	132
BisI	GCNGC	2 cut(s)	291, 375
BlsI	GCNGC	2 cut(s)	292, 376
BmgT120I	GGNCC	3 cut(s)	53, 54, 223
BmiI	GGNNCC	2 cut(s)	54, 55
BmsI	GCATC	1 cut(s)	325
BoxI	GACNNNNGTC	1 cut(s)	440
BpiI	GAAGAC	1 cut(s)	399
BpmI	CTGGAG	1 cut(s)	444
BpuEI	CTTGAG	1 cut(s)	114
BsaXI	ACNNNNNCTCC	2 cut(s)	417, 447
Bsc4I	CCNNNNNNNGG	3 cut(s)	39, 232, 275
BseGI	GGATG	3 cut(s)	15, 117, 253
BseLI	CCNNNNNNNGG	3 cut(s)	39, 232, 275
BseRI	GAGGAG	1 cut(s)	251
BseSI	GKGCMC	1 cut(s)	57
BseXI	GCAGC	1 cut(s)	386
BshFI	GGCC	3 cut(s)	55, 224, 410
BslI	CCNNNNNNNGG	3 cut(s)	39, 232, 275
BsmAI	GTCTC	1 cut(s)	132
BsnI	GGCC	3 cut(s)	55, 224, 410
Bsp120I	GGGCCC	1 cut(s)	53
Bsp1286I	GDGCHC	1 cut(s)	57
Bsp143I	GATC	1 cut(s)	427
BspACI	CCGC	4 cut(s)	203, 245, 290, 377
BspANI	GGCC	3 cut(s)	55, 224, 410
BspLI	GGNNCC	2 cut(s)	54, 55
BssMI	GATC	1 cut(s)	427
Bst4CI	ACNGT	5 cut(s)	22, 190, 220, 304, 452
BstEII	GGTNACC	1 cut(s)	433
BstENI	CCTNNNNNAGG	1 cut(s)	37
BstF5I	GGATG	3 cut(s)	15, 117, 253
BstKTI	GATC	1 cut(s)	430
BstMAI	GTCTC	1 cut(s)	132
BstMBI	GATC	1 cut(s)	427
BstMWI	GCNNNNNNNGC	1 cut(s)	335
BstPAI	GACNNNNGTC	1 cut(s)	440
BstPI	GGTNACC	1 cut(s)	433
BstSLI	GKGCMC	1 cut(s)	57
BstV1I	GCAGC	1 cut(s)	386
BstV2I	GAAGAC	1 cut(s)	399
BsuRI	GGCC	3 cut(s)	55, 224, 410
BtsCI	GGATG	3 cut(s)	15, 117, 253
BtsIMutI	CAGTG	1 cut(s)	27
Cfr13I	GGNCC	3 cut(s)	53, 54, 223
CviAII	CATG	5 cut(s)	124, 175, 343, 412, 416
DpnI	GATC	1 cut(s)	429
DpnII	GATC	1 cut(s)	427
DraIII	CACNNNGTG	1 cut(s)	346
EaeI	YGGCCR	1 cut(s)	408
EciI	GGCGGA	2 cut(s)	218, 260
Eco24I	GRGCYC	1 cut(s)	57
Eco57I	CTGAAG	1 cut(s)	291
Eco91I	GGTNACC	1 cut(s)	433
EcoNI	CCTNNNNNAGG	1 cut(s)	37
EcoO109I	RGGNCCY	2 cut(s)	53, 54
EcoO65I	GGTNACC	1 cut(s)	433
EcoT22I	ATGCAT	1 cut(s)	417
EcoT38I	GRGCYC	1 cut(s)	57
FaeI	CATG	5 cut(s)	127, 178, 346, 415, 419
FatI	CATG	5 cut(s)	123, 174, 342, 411, 415
FblI	GTMKAC	1 cut(s)	444
Fnu4HI	GCNGC	2 cut(s)	291, 375
FokI	GGATG	3 cut(s)	22, 124, 260
FriOI	GRGCYC	1 cut(s)	57
Fsp4HI	GCNGC	2 cut(s)	291, 375
GluI	GCNGC	2 cut(s)	291, 375
GsuI	CTGGAG	1 cut(s)	444
HaeIII	GGCC	3 cut(s)	55, 224, 410
Hin1II	CATG	5 cut(s)	127, 178, 346, 415, 419
HincII	GTYRAC	1 cut(s)	445
HindII	GTYRAC	1 cut(s)	445
HindIII	AAGCTT	1 cut(s)	281
HinfI	GANTC	1 cut(s)	404
HphI	GGTGA	2 cut(s)	445, 470
Hpy166II	GTNNAC	3 cut(s)	172, 445, 461
Hpy188I	TCNGA	1 cut(s)	87
Hpy188III	TCNNGA	2 cut(s)	131, 269
Hpy8I	GTNNAC	3 cut(s)	172, 445, 461
Hpy99I	CGWCG	2 cut(s)	449, 452
HpyAV	CCTTC	1 cut(s)	67
HpyCH4III	ACNGT	5 cut(s)	22, 190, 220, 304, 452
HpyCH4V	TGCA	1 cut(s)	415
HpyF10VI	GCNNNNNNNGC	1 cut(s)	335
Hsp92II	CATG	5 cut(s)	127, 178, 346, 415, 419
Kzo9I	GATC	1 cut(s)	427
LmnI	GCTCC	2 cut(s)	87, 419
LpnPI	CCDG	3 cut(s)	282, 408, 416
Lsp1109I	GCAGC	1 cut(s)	386
LweI	GCATC	1 cut(s)	325
MaeIII	GTNAC	2 cut(s)	74, 433
MalI	GATC	1 cut(s)	429
MboI	GATC	1 cut(s)	427
MboII	GAAGA	4 cut(s)	284, 392, 404, 488
MhlI	GDGCHC	1 cut(s)	57
MluCI	AATT	3 cut(s)	66, 146, 357
MlyI	GAGTC	1 cut(s)	413
MnlI	CCTC	6 cut(s)	33, 131, 199, 229, 232, 364
Mph1103I	ATGCAT	1 cut(s)	417
MseI	TTAA	4 cut(s)	17, 69, 137, 285
MslI	CAYNNNNRTG	1 cut(s)	179
MspA1I	CMGCKG	1 cut(s)	377
MwoI	GCNNNNNNNGC	1 cut(s)	335
NdeII	GATC	1 cut(s)	427
NlaIII	CATG	5 cut(s)	127, 178, 346, 415, 419
NlaIV	GGNNCC	2 cut(s)	54, 55
NmuCI	GTSAC	1 cut(s)	433
NsiI	ATGCAT	1 cut(s)	417
PflMI	CCANNNNNTGG	1 cut(s)	232
PkrI	GCNGC	2 cut(s)	292, 376
PleI	GAGTC	1 cut(s)	412
PpsI	GAGTC	1 cut(s)	412
PshAI	GACNNNNGTC	1 cut(s)	440
PspEI	GGTNACC	1 cut(s)	433
PspN4I	GGNNCC	2 cut(s)	54, 55
PspOMI	GGGCCC	1 cut(s)	53
PspPI	GGNCC	3 cut(s)	53, 54, 223
RseI	CAYNNNNRTG	1 cut(s)	179
SalI	GTCGAC	1 cut(s)	443
SaqAI	TTAA	4 cut(s)	17, 69, 137, 285
SatI	GCNGC	2 cut(s)	291, 375
Sau3AI	GATC	1 cut(s)	427
Sau96I	GGNCC	3 cut(s)	53, 54, 223
SchI	GAGTC	1 cut(s)	413
SduI	GDGCHC	1 cut(s)	57
SfaNI	GCATC	1 cut(s)	325
SmiMI	CAYNNNNRTG	1 cut(s)	179
SmlI	CTYRAG	1 cut(s)	129
SmoI	CTYRAG	1 cut(s)	129
Sse9I	AATT	3 cut(s)	66, 146, 357
SsiI	CCGC	4 cut(s)	203, 245, 290, 377
TaaI	ACNGT	5 cut(s)	22, 190, 220, 304, 452
TaqI	TCGA	3 cut(s)	213, 444, 489
TasI	AATT	3 cut(s)	66, 146, 357
TauI	GCSGC	1 cut(s)	293
Tru1I	TTAA	4 cut(s)	17, 69, 137, 285
Tru9I	TTAA	4 cut(s)	17, 69, 137, 285
TscAI	CASTG	1 cut(s)	27
TseFI	GTSAC	1 cut(s)	433
TseI	GCWGC	1 cut(s)	374
Tsp45I	GTSAC	1 cut(s)	433
TspDTI	ATGAA	1 cut(s)	197
TspRI	CASTG	1 cut(s)	27
Van91I	CCANNNNNTGG	1 cut(s)	232
XagI	CCTNNNNNAGG	1 cut(s)	37
XmiI	GTMKAC	1 cut(s)	444
Zsp2I	ATGCAT	1 cut(s)	417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.