Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0010520

Physical Location & Seq

Genomic Coordinates Forward (+)

32749459 .. 32750651

Gene Structure 1193 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1317500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGTCGACATTCACATCAACTGATCTTTGCAAGTGGCCTCCTGGATTGTTCCGGCATGTTTCATCATCGACGTTGAAATGCCAGCAAGGTTTCAGAACCAACCATGCATTGTTGCCTCTCACAATTGGTCAAAGGAGTAGTCTCAGCAATCAACCATGTAGGAAGAACAAGATTGTATGCAATAGTTTTCCATTACCTGGAGTTCCAGGTCCTTCCCACTCTTGGAAAGGATGGTTGATAGGGATTGTACTATCAGTAATATTACCCTTCTCGAGGAGCAAATGGGGGCCCTTGCTAGCATTGAAAAAGGAGGTGGACATGATTGTAGACACAGTTGAAGCAGTGGTGGAGGTGGTAGAACAGGTAGCAGAGAAAGTGGAGGAAGTGGCAGATGATATAGGTGATAGTCTTCCTGAGGGAAAGCTTAAGACTGCACTTGAATTAGTTGAAAATATAGCCAAAGAAGCAGCCAAAGACGCTCACCTTGCTGATGAGCTGATTGAGAAGGCGGAAGCACTGGAAGACCGGGTGGAAGACTTTTTTGAGTCAGCCTTGGATAAAGCAGGAGATGTTATCAAAGATGTTGGTGATGAATCAAATGTACAAGTAGCTACAGAAAAGAAAACCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

211

Amino Acids

22.99

Weight (kDa)

5.02

Isoelectric Point (pI)

34.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010520)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20180 FvH4_1g20180 FvH4_1g20180
malus_domestica	MD15G1317500.v1.1 MD15G1317700.v1.1
prunus_persica	Prupe.6G194100_v2.0.a1 Prupe.6G194200_v2.0.a1
pyrus_communis	pycom15g28020 pycom15g28030
rosa_chinensis	RchiOBHm_Chr2g0112251
rosa_laevigata	RLG00000017963
rosa_multiflora	Rmu_sc0001386.1_g000027 Rmu_sc0004467.1_g000019
rosa_roxburghii	Rroxscaffold_2G00131600
rosa_rugosa	Rorug02G0179400 Rorug02G0179500
rosa_samantha	Rh2AG231800 Rh2BG245300 Rh2CG236200 Rh2DG239700
rosa_wichuraiana	Rw2G017990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	197
AccI	GTMKAC	2 cut(s)	5, 327
AciI	CCGC	1 cut(s)	509
AfaI	GTAC	2 cut(s)	249, 603
AfiI	CCNNNNNNNGG	3 cut(s)	197, 222, 273
AflII	CTTAAG	1 cut(s)	425
AgsI	TTSAA	5 cut(s)	76, 304, 338, 440, 449
AjnI	CCWGG	3 cut(s)	40, 196, 205
AluBI	AGCT	3 cut(s)	424, 496, 611
AluI	AGCT	3 cut(s)	424, 496, 611
Alw26I	GTCTC	1 cut(s)	146
Ama87I	CYCGRG	1 cut(s)	271
AoxI	GGCC	2 cut(s)	35, 287
ApaI	GGGCCC	1 cut(s)	291
ApeKI	GCWGC	1 cut(s)	467
ArsI	GACNNNNNNTTYG	2 cut(s)	124, 156
AspS9I	GGNCC	3 cut(s)	209, 287, 288
AsuC2I	CCSGG	1 cut(s)	527
AsuHPI	GGTGA	3 cut(s)	413, 473, 599
AsuNHI	GCTAGC	1 cut(s)	295
AvaI	CYCGRG	1 cut(s)	271
AvaII	GGWCC	1 cut(s)	209
AxyI	CCTNAGG	1 cut(s)	414
BaeGI	GKGCMC	1 cut(s)	291
BanII	GRGCYC	1 cut(s)	291
BbsI	GAAGAC	3 cut(s)	401, 528, 540
BbvI	GCAGC	1 cut(s)	479
BccI	CCATC	1 cut(s)	225
BciT130I	CCWGG	3 cut(s)	42, 198, 207
BcnI	CCSGG	1 cut(s)	527
BcoDI	GTCTC	1 cut(s)	146
BfaI	CTAG	1 cut(s)	296
BfmI	CTRYAG	1 cut(s)	612
BfrI	CTTAAG	1 cut(s)	425
BisI	GCNGC	1 cut(s)	468
BlsI	GCNGC	1 cut(s)	469
Bme1390I	CCNGG	4 cut(s)	42, 198, 207, 527
Bme18I	GGWCC	1 cut(s)	209
BmeT110I	CYCGRG	1 cut(s)	271
BmgT120I	GGNCC	3 cut(s)	209, 287, 288
BmiI	GGNNCC	2 cut(s)	288, 289
BmrFI	CCNGG	4 cut(s)	42, 198, 207, 527
BmrI	ACTGGG	1 cut(s)	622
BmtI	GCTAGC	1 cut(s)	299
BmuI	ACTGGG	1 cut(s)	622
BpiI	GAAGAC	3 cut(s)	401, 528, 540
BpmI	CTGGAG	1 cut(s)	219
BpuMI	CCSGG	1 cut(s)	527
BsaJI	CCNNGG	1 cut(s)	552
Bsc4I	CCNNNNNNNGG	3 cut(s)	197, 222, 273
Bse1I	ACTGG	2 cut(s)	522, 628
Bse21I	CCTNAGG	1 cut(s)	414
BseBI	CCWGG	3 cut(s)	42, 198, 207
BseDI	CCNNGG	1 cut(s)	552
BseGI	GGATG	1 cut(s)	236
BseLI	CCNNNNNNNGG	3 cut(s)	197, 222, 273
BseMII	CTCAG	2 cut(s)	157, 405
BseNI	ACTGG	2 cut(s)	522, 628
BseRI	GAGGAG	1 cut(s)	289
BseSI	GKGCMC	1 cut(s)	291
BseXI	GCAGC	1 cut(s)	479
BsgI	GTGCAG	1 cut(s)	417
BshFI	GGCC	2 cut(s)	37, 289
BsiHKCI	CYCGRG	1 cut(s)	271
BsiSI	CCGG	2 cut(s)	52, 526
BslI	CCNNNNNNNGG	3 cut(s)	197, 222, 273
BsmAI	GTCTC	1 cut(s)	146
BsnI	GGCC	2 cut(s)	37, 289
BsoBI	CYCGRG	1 cut(s)	271
Bsp120I	GGGCCC	1 cut(s)	287
Bsp1286I	GDGCHC	1 cut(s)	291
Bsp1407I	TGTACA	1 cut(s)	601
Bsp143I	GATC	1 cut(s)	22
BspACI	CCGC	1 cut(s)	509
BspANI	GGCC	2 cut(s)	37, 289
BspCNI	CTCAG	2 cut(s)	156, 406
BspLI	GGNNCC	2 cut(s)	288, 289
BspOI	GCTAGC	1 cut(s)	299
BspTI	CTTAAG	1 cut(s)	425
BsrGI	TGTACA	1 cut(s)	601
BsrI	ACTGG	2 cut(s)	522, 628
BssECI	CCNNGG	1 cut(s)	552
BssMI	GATC	1 cut(s)	22
BssT1I	CCWWGG	1 cut(s)	552
Bst2UI	CCWGG	3 cut(s)	42, 198, 207
Bst4CI	ACNGT	1 cut(s)	334
BstAFI	CTTAAG	1 cut(s)	425
BstAUI	TGTACA	1 cut(s)	601
BstC8I	GCNNGC	2 cut(s)	83, 297
BstDEI	CTNAG	2 cut(s)	143, 414
BstENI	CCTNNNNNAGG	1 cut(s)	271
BstF5I	GGATG	1 cut(s)	236
BstKTI	GATC	1 cut(s)	25
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	1 cut(s)	22
BstMWI	GCNNNNNNNGC	3 cut(s)	464, 476, 485
BstNI	CCWGG	3 cut(s)	42, 198, 207
BstNSI	RCATGY	1 cut(s)	59
BstSCI	CCNGG	4 cut(s)	40, 196, 205, 525
BstSFI	CTRYAG	1 cut(s)	612
BstSLI	GKGCMC	1 cut(s)	291
BstV1I	GCAGC	1 cut(s)	479
BstV2I	GAAGAC	3 cut(s)	401, 528, 540
Bsu36I	CCTNAGG	1 cut(s)	414
BsuRI	GGCC	2 cut(s)	37, 289
BtsCI	GGATG	1 cut(s)	236
BtsI	GCAGTG	1 cut(s)	348
BtsIMutI	CAGTG	2 cut(s)	348, 515
Cac8I	GCNNGC	2 cut(s)	83, 297
Cfr13I	GGNCC	3 cut(s)	209, 287, 288
CseI	GACGC	1 cut(s)	485
Csp6I	GTAC	2 cut(s)	248, 602
CviAII	CATG	4 cut(s)	56, 104, 156, 319
CviJI	RGCY	8 cut(s)	37, 289, 424, 458, 470, 496, 551, 611
CviKI_1	RGCY	8 cut(s)	37, 289, 424, 458, 470, 496, 551, 611
CviQI	GTAC	2 cut(s)	248, 602
DdeI	CTNAG	2 cut(s)	143, 414
DpnI	GATC	1 cut(s)	24
DpnII	GATC	1 cut(s)	22
EciI	GGCGGA	1 cut(s)	524
Eco130I	CCWWGG	1 cut(s)	552
Eco24I	GRGCYC	1 cut(s)	291
Eco47I	GGWCC	1 cut(s)	209
Eco81I	CCTNAGG	1 cut(s)	414
Eco88I	CYCGRG	1 cut(s)	271
EcoNI	CCTNNNNNAGG	1 cut(s)	271
EcoO109I	RGGNCCY	3 cut(s)	209, 287, 288
EcoRII	CCWGG	3 cut(s)	40, 196, 205
EcoT14I	CCWWGG	1 cut(s)	552
EcoT22I	ATGCAT	1 cut(s)	109
EcoT38I	GRGCYC	1 cut(s)	291
ErhI	CCWWGG	1 cut(s)	552
FaeI	CATG	4 cut(s)	59, 107, 159, 322
FaiI	YATR	7 cut(s)	57, 105, 157, 178, 320, 398, 455
FatI	CATG	4 cut(s)	55, 103, 155, 318
FblI	GTMKAC	2 cut(s)	5, 327
Fnu4HI	GCNGC	1 cut(s)	468
FokI	GGATG	1 cut(s)	243
FriOI	GRGCYC	1 cut(s)	291
Fsp4HI	GCNGC	1 cut(s)	468
FspBI	CTAG	1 cut(s)	296
GluI	GCNGC	1 cut(s)	468
GsuI	CTGGAG	1 cut(s)	219
HaeIII	GGCC	2 cut(s)	37, 289
HapII	CCGG	2 cut(s)	52, 526
HgaI	GACGC	1 cut(s)	485
Hin1II	CATG	4 cut(s)	59, 107, 159, 322
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HindIII	AAGCTT	1 cut(s)	422
HinfI	GANTC	2 cut(s)	545, 593
HpaII	CCGG	2 cut(s)	52, 526
HphI	GGTGA	3 cut(s)	413, 473, 599
Hpy166II	GTNNAC	3 cut(s)	6, 316, 328
Hpy188I	TCNGA	1 cut(s)	95
Hpy188III	TCNNGA	2 cut(s)	271, 413
Hpy8I	GTNNAC	3 cut(s)	6, 316, 328
Hpy99I	CGWCG	1 cut(s)	73
HpyAV	CCTTC	3 cut(s)	222, 277, 499
HpyCH4III	ACNGT	1 cut(s)	334
HpyCH4IV	ACGT	1 cut(s)	71
HpyCH4V	TGCA	4 cut(s)	30, 107, 180, 434
HpyF10VI	GCNNNNNNNGC	3 cut(s)	464, 476, 485
HpyF3I	CTNAG	2 cut(s)	143, 414
HpySE526I	ACGT	1 cut(s)	71
Hsp92II	CATG	4 cut(s)	59, 107, 159, 322
Kzo9I	GATC	1 cut(s)	22
LmnI	GCTCC	1 cut(s)	276
Lsp1109I	GCAGC	1 cut(s)	479
MaeI	CTAG	1 cut(s)	296
MaeII	ACGT	1 cut(s)	71
MalI	GATC	1 cut(s)	24
MboI	GATC	1 cut(s)	22
MboII	GAAGA	4 cut(s)	175, 401, 533, 545
MfeI	CAATTG	1 cut(s)	123
MhlI	GDGCHC	1 cut(s)	291
MluCI	AATT	2 cut(s)	123, 440
MlyI	GAGTC	1 cut(s)	554
MnlI	CCTC	7 cut(s)	48, 126, 267, 304, 343, 373, 409
Mph1103I	ATGCAT	1 cut(s)	109
MseI	TTAA	1 cut(s)	426
MspCI	CTTAAG	1 cut(s)	425
MspI	CCGG	2 cut(s)	52, 526
MspR9I	CCNGG	4 cut(s)	42, 198, 207, 527
MunI	CAATTG	1 cut(s)	123
MvaI	CCWGG	3 cut(s)	42, 198, 207
MwoI	GCNNNNNNNGC	3 cut(s)	464, 476, 485
NciI	CCSGG	1 cut(s)	527
NdeII	GATC	1 cut(s)	22
NheI	GCTAGC	1 cut(s)	295
NlaIII	CATG	4 cut(s)	59, 107, 159, 322
NlaIV	GGNNCC	2 cut(s)	288, 289
NsiI	ATGCAT	1 cut(s)	109
NspI	RCATGY	1 cut(s)	59
PaeR7I	CTCGAG	1 cut(s)	271
PfeI	GAWTC	1 cut(s)	593
PflMI	CCANNNNNTGG	1 cut(s)	197
PfoI	TCCNGGA	1 cut(s)	40
PkrI	GCNGC	1 cut(s)	469
PleI	GAGTC	1 cut(s)	553
PpsI	GAGTC	1 cut(s)	553
PpuMI	RGGWCCY	1 cut(s)	209
Psp5II	RGGWCCY	1 cut(s)	209
Psp6I	CCWGG	3 cut(s)	40, 196, 205
PspGI	CCWGG	3 cut(s)	40, 196, 205
PspN4I	GGNNCC	2 cut(s)	288, 289
PspOMI	GGGCCC	1 cut(s)	287
PspPI	GGNCC	3 cut(s)	209, 287, 288
PspPPI	RGGWCCY	1 cut(s)	209
RsaI	GTAC	2 cut(s)	249, 603
RsaNI	GTAC	2 cut(s)	248, 602
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	426
SatI	GCNGC	1 cut(s)	468
Sau3AI	GATC	1 cut(s)	22
Sau96I	GGNCC	3 cut(s)	209, 287, 288
SchI	GAGTC	1 cut(s)	554
ScrFI	CCNGG	4 cut(s)	42, 198, 207, 527
SduI	GDGCHC	1 cut(s)	291
SfcI	CTRYAG	1 cut(s)	612
Sfr274I	CTCGAG	1 cut(s)	271
SinI	GGWCC	1 cut(s)	209
SlaI	CTCGAG	1 cut(s)	271
SmlI	CTYRAG	2 cut(s)	271, 425
SmoI	CTYRAG	2 cut(s)	271, 425
Sse9I	AATT	2 cut(s)	123, 440
SsiI	CCGC	1 cut(s)	509
SspI	AATATT	1 cut(s)	261
SspMI	CTAG	1 cut(s)	296
StyD4I	CCNGG	4 cut(s)	40, 196, 205, 525
StyI	CCWWGG	1 cut(s)	552
TaaI	ACNGT	1 cut(s)	334
TaiI	ACGT	1 cut(s)	74
TaqI	TCGA	3 cut(s)	5, 68, 272
TasI	AATT	2 cut(s)	123, 440
TatI	WGTACW	2 cut(s)	247, 601
TfiI	GAWTC	1 cut(s)	593
Tru1I	TTAA	1 cut(s)	426
Tru9I	TTAA	1 cut(s)	426
TscAI	CASTG	2 cut(s)	348, 522
TseI	GCWGC	1 cut(s)	467
TspDTI	ATGAA	2 cut(s)	51, 606
TspRI	CASTG	2 cut(s)	348, 522
Van91I	CCANNNNNTGG	1 cut(s)	197
Vha464I	CTTAAG	1 cut(s)	425
VpaK11BI	GGWCC	1 cut(s)	209
XagI	CCTNNNNNAGG	1 cut(s)	271
XceI	RCATGY	1 cut(s)	59
XhoI	CTCGAG	1 cut(s)	271
XmiI	GTMKAC	2 cut(s)	5, 327
XspI	CTAG	1 cut(s)	296
Zsp2I	ATGCAT	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.