Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0010520

Physical Location & Seq

Genomic Coordinates Forward (+)

32760038 .. 32762489

Gene Structure 2452 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1317700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGTCAATAATCACAACATCAATTGATCTAAGTCGGTCGGCAAGCGGTTGCGTTTTTGTGAAGCATCCTGGAGTAGTAGTTCAACCATTTTCATCATCATCAACATGGAAATGCCAACAAGGTTTCAGAAGCAACCCTGCATTATTGTCTCTAATTAGCAGCCAACCATGTCGGAAGAAGATTGTACGCAGTAGCTCTACATCACCTGGAGATCAAAGTCCTTCTGTAGAGTATTCAAACTCCTGGAGAGGCTGGATGATAGGGATGGTATTCTCAGTAATTATACCTTTTTGGAGGCACAAATGGGGGCCTTTGCTACAATTGAAGAAGGAGGTGGACATGGTTGTAAACAATGTTGAAGCAGTCGTGGAGGTGGTAGAAAAGGTGGCAGAAAAAGTGGAGGAAGTGGCAGATGAAATAGGTGATCATCTTCCAGCTGATGGAAAGTTTAGGGCTGCTTCTGAAGTAGTTGAAAGTATAGCCAGAGAAGTAGCCAAAGATGCACACCTTGCAGACCAGCTAATTGAGAAGGCGGAAGCACTAGAAGATCAGGTGGAAGACTTTTTTGAGTCAGCTATGGATAATGTAGGAAATGCGACCAAAGATGTTAGCGATGAATCAAATGTACAAGTAGCTACAGAAAAGAAAAGCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

219

Amino Acids

23.97

Weight (kDa)

5.01

Isoelectric Point (pI)

46.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010520)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20180 FvH4_1g20180 FvH4_1g20180
malus_domestica	MD15G1317500.v1.1 MD15G1317700.v1.1
prunus_persica	Prupe.6G194100_v2.0.a1 Prupe.6G194200_v2.0.a1
pyrus_communis	pycom15g28020 pycom15g28030
rosa_chinensis	RchiOBHm_Chr2g0112251
rosa_laevigata	RLG00000017963
rosa_multiflora	Rmu_sc0001386.1_g000027 Rmu_sc0004467.1_g000019
rosa_roxburghii	Rroxscaffold_2G00131600
rosa_rugosa	Rorug02G0179400 Rorug02G0179500
rosa_samantha	Rh2AG231800 Rh2BG245300 Rh2CG236200 Rh2DG239700
rosa_wichuraiana	Rw2G017990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	440
AciI	CCGC	2 cut(s)	45, 533
AcuI	CTGAAG	1 cut(s)	483
AfaI	GTAC	2 cut(s)	186, 627
AfiI	CCNNNNNNNGG	1 cut(s)	440
AgsI	TTSAA	5 cut(s)	83, 237, 325, 359, 473
AjnI	CCWGG	3 cut(s)	67, 205, 242
AloI	GAACNNNNNNTCC	2 cut(s)	63, 95
AluBI	AGCT	5 cut(s)	195, 437, 520, 575, 635
AluI	AGCT	5 cut(s)	195, 437, 520, 575, 635
Alw26I	GTCTC	1 cut(s)	153
AoxI	GGCC	1 cut(s)	308
ApeKI	GCWGC	2 cut(s)	159, 455
AspS9I	GGNCC	1 cut(s)	308
AsuHPI	GGTGA	2 cut(s)	195, 434
BbsI	GAAGAC	1 cut(s)	564
BbvI	GCAGC	2 cut(s)	171, 442
BccI	CCATC	2 cut(s)	259, 434
BciT130I	CCWGG	3 cut(s)	69, 207, 244
BclI	TGATCA	1 cut(s)	424
BcoDI	GTCTC	1 cut(s)	153
BfaI	CTAG	1 cut(s)	542
BfmI	CTRYAG	2 cut(s)	225, 636
BisI	GCNGC	2 cut(s)	160, 456
BlsI	GCNGC	2 cut(s)	161, 457
Bme1390I	CCNGG	3 cut(s)	69, 207, 244
BmgT120I	GGNCC	1 cut(s)	308
BmiI	GGNNCC	1 cut(s)	309
BmrFI	CCNGG	3 cut(s)	69, 207, 244
BmsI	GCATC	2 cut(s)	73, 490
BpiI	GAAGAC	1 cut(s)	564
BpmI	CTGGAG	3 cut(s)	90, 228, 265
BsaXI	ACNNNNNCTCC	2 cut(s)	63, 93
Bsc4I	CCNNNNNNNGG	1 cut(s)	440
Bse1I	ACTGG	1 cut(s)	652
BseBI	CCWGG	3 cut(s)	69, 207, 244
BseGI	GGATG	3 cut(s)	64, 261, 270
BseLI	CCNNNNNNNGG	1 cut(s)	440
BseMII	CTCAG	1 cut(s)	288
BseNI	ACTGG	1 cut(s)	652
BseXI	GCAGC	2 cut(s)	171, 442
Bsh1285I	CGRYCG	1 cut(s)	38
BshFI	GGCC	1 cut(s)	310
BsiEI	CGRYCG	1 cut(s)	38
BslI	CCNNNNNNNGG	1 cut(s)	440
BsmAI	GTCTC	1 cut(s)	153
BsnI	GGCC	1 cut(s)	310
Bsp1407I	TGTACA	1 cut(s)	625
Bsp143I	GATC	4 cut(s)	25, 211, 424, 547
BspACI	CCGC	2 cut(s)	45, 533
BspANI	GGCC	1 cut(s)	310
BspCNI	CTCAG	1 cut(s)	287
BspLI	GGNNCC	1 cut(s)	309
BsrGI	TGTACA	1 cut(s)	625
BsrI	ACTGG	1 cut(s)	652
BssMI	GATC	4 cut(s)	25, 211, 424, 547
Bst2UI	CCWGG	3 cut(s)	69, 207, 244
BstAPI	GCANNNNNTGC	1 cut(s)	509
BstAUI	TGTACA	1 cut(s)	625
BstC8I	GCNNGC	1 cut(s)	43
BstDEI	CTNAG	2 cut(s)	29, 274
BstF5I	GGATG	3 cut(s)	64, 261, 270
BstKTI	GATC	4 cut(s)	28, 214, 427, 550
BstMAI	GTCTC	1 cut(s)	153
BstMBI	GATC	4 cut(s)	25, 211, 424, 547
BstMCI	CGRYCG	1 cut(s)	38
BstMWI	GCNNNNNNNGC	2 cut(s)	500, 509
BstNI	CCWGG	3 cut(s)	69, 207, 244
BstSCI	CCNGG	3 cut(s)	67, 205, 242
BstSFI	CTRYAG	2 cut(s)	225, 636
BstV1I	GCAGC	2 cut(s)	171, 442
BstV2I	GAAGAC	1 cut(s)	564
BsuRI	GGCC	1 cut(s)	310
BtgZI	GCGATG	1 cut(s)	627
BtsCI	GGATG	3 cut(s)	64, 261, 270
Cac8I	GCNNGC	1 cut(s)	43
Cfr13I	GGNCC	1 cut(s)	308
Csp6I	GTAC	2 cut(s)	185, 626
CviAII	CATG	3 cut(s)	105, 168, 340
CviQI	GTAC	2 cut(s)	185, 626
DdeI	CTNAG	2 cut(s)	29, 274
DpnI	GATC	4 cut(s)	27, 213, 426, 549
DpnII	GATC	4 cut(s)	25, 211, 424, 547
EciI	GGCGGA	1 cut(s)	548
Eco57I	CTGAAG	1 cut(s)	483
EcoO109I	RGGNCCY	1 cut(s)	308
EcoRII	CCWGG	3 cut(s)	67, 205, 242
FaeI	CATG	3 cut(s)	108, 171, 343
FaiI	YATR	6 cut(s)	106, 169, 284, 341, 479, 578
FatI	CATG	3 cut(s)	104, 167, 339
FbaI	TGATCA	1 cut(s)	424
Fnu4HI	GCNGC	2 cut(s)	160, 456
FokI	GGATG	3 cut(s)	51, 268, 277
Fsp4HI	GCNGC	2 cut(s)	160, 456
FspBI	CTAG	1 cut(s)	542
GluI	GCNGC	2 cut(s)	160, 456
GsuI	CTGGAG	3 cut(s)	90, 228, 265
HaeIII	GGCC	1 cut(s)	310
Hin1II	CATG	3 cut(s)	108, 171, 343
HinfI	GANTC	2 cut(s)	569, 617
HphI	GGTGA	2 cut(s)	195, 434
Hpy166II	GTNNAC	2 cut(s)	337, 349
Hpy188I	TCNGA	3 cut(s)	128, 174, 463
Hpy8I	GTNNAC	2 cut(s)	337, 349
HpyAV	CCTTC	3 cut(s)	231, 322, 523
HpyCH4V	TGCA	3 cut(s)	140, 503, 512
HpyF10VI	GCNNNNNNNGC	2 cut(s)	500, 509
HpyF3I	CTNAG	2 cut(s)	29, 274
Hsp92II	CATG	3 cut(s)	108, 171, 343
Ksp22I	TGATCA	1 cut(s)	424
Kzo9I	GATC	4 cut(s)	25, 211, 424, 547
Lsp1109I	GCAGC	2 cut(s)	171, 442
LweI	GCATC	2 cut(s)	73, 490
MaeI	CTAG	1 cut(s)	542
MalI	GATC	4 cut(s)	27, 213, 426, 549
MboI	GATC	4 cut(s)	25, 211, 424, 547
MboII	GAAGA	6 cut(s)	187, 190, 337, 422, 557, 569
MfeI	CAATTG	2 cut(s)	21, 320
MluCI	AATT	5 cut(s)	21, 153, 279, 320, 522
MlyI	GAGTC	1 cut(s)	578
MmeI	TCCRAC	1 cut(s)	152
MnlI	CCTC	5 cut(s)	242, 288, 325, 364, 394
MslI	CAYNNNNRTG	2 cut(s)	103, 109
MspA1I	CMGCKG	1 cut(s)	437
MspR9I	CCNGG	3 cut(s)	69, 207, 244
MunI	CAATTG	2 cut(s)	21, 320
MvaI	CCWGG	3 cut(s)	69, 207, 244
MwoI	GCNNNNNNNGC	2 cut(s)	500, 509
NdeII	GATC	4 cut(s)	25, 211, 424, 547
NlaIII	CATG	3 cut(s)	108, 171, 343
NlaIV	GGNNCC	1 cut(s)	309
PfeI	GAWTC	1 cut(s)	617
PflMI	CCANNNNNTGG	1 cut(s)	440
PfoI	TCCNGGA	2 cut(s)	67, 242
PkrI	GCNGC	2 cut(s)	161, 457
PleI	GAGTC	1 cut(s)	577
PpsI	GAGTC	1 cut(s)	577
Psp6I	CCWGG	3 cut(s)	67, 205, 242
PspGI	CCWGG	3 cut(s)	67, 205, 242
PspN4I	GGNNCC	1 cut(s)	309
PspPI	GGNCC	1 cut(s)	308
PvuII	CAGCTG	1 cut(s)	437
RsaI	GTAC	2 cut(s)	186, 627
RsaNI	GTAC	2 cut(s)	185, 626
RseI	CAYNNNNRTG	2 cut(s)	103, 109
SatI	GCNGC	2 cut(s)	160, 456
Sau3AI	GATC	4 cut(s)	25, 211, 424, 547
Sau96I	GGNCC	1 cut(s)	308
SchI	GAGTC	1 cut(s)	578
ScrFI	CCNGG	3 cut(s)	69, 207, 244
SfaNI	GCATC	2 cut(s)	73, 490
SfcI	CTRYAG	2 cut(s)	225, 636
SmiMI	CAYNNNNRTG	2 cut(s)	103, 109
Sse9I	AATT	5 cut(s)	21, 153, 279, 320, 522
SsiI	CCGC	2 cut(s)	45, 533
SspMI	CTAG	1 cut(s)	542
StyD4I	CCNGG	3 cut(s)	67, 205, 242
TaqII	GACCGA	1 cut(s)	24
TasI	AATT	5 cut(s)	21, 153, 279, 320, 522
TatI	WGTACW	1 cut(s)	625
TfiI	GAWTC	1 cut(s)	617
TseI	GCWGC	2 cut(s)	159, 455
TspDTI	ATGAA	3 cut(s)	81, 429, 630
Van91I	CCANNNNNTGG	1 cut(s)	440
XspI	CTAG	1 cut(s)	542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.