FvH4_1g20891

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0013595
Physical Location & Seq
Forward (+)
13018736 .. 13023738
5003 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g20891.t1

Sequence Viewer

Length: 2433 bp
ATGTTAAGCCACCACCGCAATGCCCTCAGACACATCCACGCGCCACCGCTATTCTCAATCCCCTCCCTCCCTCTCTCAACCTCCACCGCCACAATCCCAACTCACCCTCACTCCAATCTCCTCACACTCATCTCCGCCGCCCAAACCCTCCACCAAACCAAGCACCTCCACGCCCTCTCTCTCCTCACCGGCCTCCTCCCCGGCAGCGTCTCCCTCTGCGCCTCCCTCATCCTCCGCTACGCCTCCTTCAACTCCCCCGCCGCCTCCCGCCGCCTCTTCGACCTCACCGTCCCTTATTCCCGCACCGCCTTCCTCCACAACACTCTCATCAGAGCCTTCTCCATCGCTCAATTCGACGATCGCTTCCGGACTTACAATCACATGGTCCGCACCGGCGTCCGCCTCGACGATCACACCTTTCCGTTCGTCTTCAAAGCCTGTTCGGATTCCATGGAGGTCAAGAAGGGGCTGGAGGTTCACGGCGTAGTGGTTAAGCTAGGGTTTGATTCGGATGTTTACGTAGGGAACACGCTTCTTTCGTTTTACGGCAACTGCGGGAAACTAGGGGACGCACGGAAGGTGTTTGATGAAATGCCTGAGAGAGATGCGGTGTCGTGGAACACGATTATTCGGGTTTTTGCAGTGAATGGGGGATATGTTGAGGCCTTGCATTGTTACAGGGAGATGAGTTTGGGGGTTTGGTGTAGGCCGAATGTTGTTAGTGTTGTTAGTGTGTTGCCGGTTTGCGCTGAGCTTGCGGATGAGGTGATGGCGGTGCAGATACATTGCTATGTTGTGAAGTCGGGGTTGGGTACGCAGGTGACTGTTGGAAATGCGTTGGTGGATGTGTATGGGAAGTGTTGGAATGTGAAGGCGTCGAAGCAGGTATTTGATGAGATGAGTGAGAGGAATGAGGTTTCGTGGAATGCAGCGATTACTGGTCTTTCTTATGTGGGGAATAATGCAGGAGCATTGAAGATGTTTAGGTCGATGATTGATGTAGGGGTTAAGCCGAACTCTGTCACCATTTCCAGCATGTTGCCAGTTTTGGTGGAACTAGAGTTATTTGGGGTTGGTAAAGAACTCCATGGTTTCTGTGTAAAAATGGGTATTGAATCAGATGTTTTTATTGCCAACTCGTTAATTGATATGTATGCCAAATCAGGCCATTCGTATGAGGCATCCAATGTGTTCCGAGAGATGGATGAAAGGAATATTGTTTCTTGGAATGCCATGATTGCTAATTTTGCTCAAAACAGGCTTGAGTTGGAAGCAGTTGGACTTGTGAGACAAATGCAAGCTGATGGTGAAATTCCCAATTCTGTCACCATCACAAATCTTCTTCCCGCTTGTTCATGGTTGGGTTCACTTCGGCTTGGGAAAGAAATTCATGCAAGGACAATTCGCATGGGATCTGTCTCTGATTTGTTTGTCTCTAATGCTCTGACAGACATGTACGCAAAATGTGGCTGGCTAGATCTTGCTCGAAATATCTTTAACATTTCCCTTAGAGATAAGGTGTCCTACAACACACTGATAATTGGTTATTCCCAGACAACAGATTGCTCTGAATCTCTAAGTTTGTTTTCAGAAATGAAGCAGGTGGGCATGATGCATGACACTGTTTCATTTGTGGGAGTTATATCAGCTTGCACAAATCTGACCGCTATCAAGCAAGGCAAAGAGATTCATGGATCTGTAATAAGAAATCTTTTTGACTGTCATCTCTTTGTTGCAAACTCACTTTTGGATTTCTATACCAAATCTGGCCGGATTGATCTTGCTACTAAGGTCTTTGACCGCATTCCCAATAAGGATGTAGCCTCTTGGAATACTATGATTTTGGGATATGGAATGCTAGGTGAGCTTGACACTGCAATCAGTTTCTTTGAAGCAATGAGGGAAGATGGTGTAGAATATGATTCAGTTTCATACATTGCAGTTTTGTCATCTTGTAGTCATGGAGGGTTAGTTGAAAAGGGCAAAAGATACTTTGAGGGGATGCTGGCACAAAATATCGAGCCTACACAACAGCACTACGCTTGCATGGTTGATCTCCTTGGCCGAGCTGGCCTCATGGAAGAAGCAATAAAACTTATTAATGGCATGCCAATTGTACCAGATGCCAACATTTGGGGTTCTTTACTTGGGGCATGTCGAATCCATGGGAATATAGAATTGGCGAGTTGGGCAGCCGAGTATCTATTTAAGTTAAAACCTGACCATTGTGGGTACTATATACTGCTTTCTAACATGTTTGCAGAAGCAGGTAGATGGGAAGATGTAAAGAGGGTGAGGGAATTGATGAAATCAAGGGGATTGAAGAAAAATCGTTCTTACAGCTGGGTTCAGATTCGAGATGAAGTCCATGCTTTTGGAGTTGGAGAGAGACTGGAGAGACTGAATTCAGATTGCTTGCTGGCAGAATCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

811

Amino Acids

89.89

Weight (kDa)

6.52

Isoelectric Point (pI)

36.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 304 - 348 3e-08 PPR repeat family
PPR_2 PF13041 404 - 451 1e-05 PPR repeat family
PPR_2 PF13041 505 - 552 2.4e-06 PPR repeat family
PPR_2 PF13041 605 - 653 7.7e-09 PPR repeat family
PPR PF01535 609 - 638 3e-06 PPR repeat
E_motif PF20431 722 - 784 1.7e-17 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013595)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20891
malus_domestica MD15G1186900.v1.1
prunus_persica Prupe.6G186500_v2.0.a1
pyrus_communis pycom15g16750
rosa_chinensis RchiOBHm_Chr2g0113511
rosa_laevigata RLG00000018071
rosa_multiflora Rmu_sc0000929.1_g000048 Rmu_sc0007415.1_g000023
rosa_roxburghii Rroxscaffold_2G00129180 Rroxscaffold_2G00129970
rosa_rugosa Rorug02G0187900 Rorug02G0188000
rosa_samantha Rh2AG242600 Rh2BG256500 Rh2CG246800 Rh2CG246900 Rh2DG250600
rosa_wichuraiana Rw2G018970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 808, 1591
AasI GACNNNNNNGTC 1 cut(s) 287
Acc36I ACCTGC 4 cut(s) 808, 874, 1591, 2258
AccB7I CCANNNNNTGG 1 cut(s) 2133
AccII CGCG 1 cut(s) 41
AccIII TCCGGA 1 cut(s) 366
AclWI GGATC 2 cut(s) 1420, 1702
AcoI YGGCCR 2 cut(s) 1768, 2062
AcsI RAATTY 3 cut(s) 1311, 1386, 2404
AcyI GRCGYC 2 cut(s) 396, 875
AfaI GTAC 4 cut(s) 814, 1457, 2118, 2234
AfiI CCNNNNNNNGG 2 cut(s) 1201, 2133
AflIII ACRYGT 2 cut(s) 1452, 2253
AgsI TTSAA 7 cut(s) 250, 433, 976, 1115, 1892, 1976, 2323
AjuI GAANNNNNNNTTGG 4 cut(s) 791, 823, 2162, 2194
AluBI AGCT 7 cut(s) 496, 754, 1301, 1649, 1867, 2069, 2343
AluI AGCT 7 cut(s) 496, 754, 1301, 1649, 1867, 2069, 2343
Alw26I GTCTC 6 cut(s) 214, 1282, 1423, 1438, 2383, 2392
AlwI GGATC 2 cut(s) 1420, 1702
Aor13HI TCCGGA 1 cut(s) 366
AoxI GGCC 7 cut(s) 190, 663, 707, 1165, 1768, 2062, 2071
ApeKI GCWGC 3 cut(s) 204, 929, 2192
ApoI RAATTY 3 cut(s) 1311, 1386, 2404
AseI ATTAAT 1 cut(s) 2100
AspLEI GCGC 3 cut(s) 43, 221, 749
AspS9I GGNCC 1 cut(s) 385
AsuC2I CCSGG 1 cut(s) 201
AvaII GGWCC 1 cut(s) 385
BaeI ACNNNNGTAYC 2 cut(s) 804, 837
BbsI GAAGAC 1 cut(s) 421
BbvI GCAGC 3 cut(s) 216, 941, 2204
BccI CCATC 7 cut(s) 350, 763, 1195, 1298, 1337, 1901, 2268
BceAI ACGGC 2 cut(s) 496, 562
BcnI CCSGG 1 cut(s) 201
BcoDI GTCTC 6 cut(s) 214, 1282, 1423, 1438, 2383, 2392
BfaI CTAG 5 cut(s) 497, 563, 1058, 1475, 1859
BfuAI ACCTGC 4 cut(s) 808, 874, 1591, 2258
BglI GCCNNNNNGGC 1 cut(s) 2070
BglII AGATCT 1 cut(s) 1477
BisI GCNGC 6 cut(s) 138, 205, 261, 271, 930, 2193
BlpI GCTNAGC 1 cut(s) 750
BlsI GCNGC 6 cut(s) 139, 206, 262, 272, 931, 2194
Bme1390I CCNGG 1 cut(s) 201
Bme18I GGWCC 1 cut(s) 385
BmgT120I GGNCC 1 cut(s) 385
BmrFI CCNGG 1 cut(s) 201
BmsI GCATC 5 cut(s) 595, 1190, 1602, 1992, 2113
BpiI GAAGAC 1 cut(s) 421
BplI GAGNNNNNCTC 2 cut(s) 2058, 2090
BpmI CTGGAG 2 cut(s) 491, 2414
Bpu1102I GCTNAGC 1 cut(s) 750
BpuEI CTTGAG 1 cut(s) 1283
BpuMI CCSGG 1 cut(s) 201
BsaAI YACGTR 1 cut(s) 520
BsaHI GRCGYC 2 cut(s) 396, 875
BsaJI CCNNGG 5 cut(s) 199, 450, 1087, 2059, 2164
BsaWI WCCGGW 1 cut(s) 366
BsaXI ACNNNNNCTCC 4 cut(s) 95, 125, 1956, 1986
Bsc4I CCNNNNNNNGG 2 cut(s) 1201, 2133
Bse118I RCCGGY 3 cut(s) 188, 392, 739
Bse1I ACTGG 3 cut(s) 943, 1043, 2397
Bse3DI GCAATG 4 cut(s) 25, 784, 1902, 1935
BseAI TCCGGA 1 cut(s) 366
BseDI CCNNGG 5 cut(s) 199, 450, 1087, 2059, 2164
BseGI GGATG 9 cut(s) 33, 228, 517, 766, 850, 1181, 1210, 1822, 2007
BseLI CCNNNNNNNGG 2 cut(s) 1201, 2133
BseMI GCAATG 4 cut(s) 25, 784, 1902, 1935
BseMII CTCAG 3 cut(s) 40, 588, 741
BseNI ACTGG 3 cut(s) 943, 1043, 2397
BseRI GAGGAG 3 cut(s) 110, 173, 185
BseXI GCAGC 3 cut(s) 216, 941, 2204
BseYI CCCAGC 1 cut(s) 2343
BsgI GTGCAG 1 cut(s) 797
Bsh1236I CGCG 1 cut(s) 41
Bsh1285I CGRYCG 1 cut(s) 361
BshFI GGCC 7 cut(s) 192, 665, 709, 1167, 1770, 2064, 2073
BsiEI CGRYCG 1 cut(s) 361
BsiSI CCGG 6 cut(s) 189, 201, 367, 393, 740, 1771
BslFI GGGAC 2 cut(s) 275, 581
BslI CCNNNNNNNGG 2 cut(s) 1201, 2133
BsmAI GTCTC 6 cut(s) 214, 1282, 1423, 1438, 2383, 2392
BsmBI CGTCTC 1 cut(s) 214
BsmFI GGGAC 2 cut(s) 275, 581
BsmI GAATGC 4 cut(s) 931, 1234, 1803, 1860
BsnI GGCC 7 cut(s) 192, 665, 709, 1167, 1770, 2064, 2073
Bsp13I TCCGGA 1 cut(s) 366
Bsp143I GATC 7 cut(s) 358, 409, 1412, 1477, 1694, 1777, 2053
Bsp1720I GCTNAGC 1 cut(s) 750
Bsp19I CCATGG 3 cut(s) 450, 1087, 2164
BspANI GGCC 7 cut(s) 192, 665, 709, 1167, 1770, 2064, 2073
BspCNI CTCAG 3 cut(s) 39, 589, 742
BspEI TCCGGA 1 cut(s) 366
BspFNI CGCG 1 cut(s) 41
BspMI ACCTGC 4 cut(s) 808, 874, 1591, 2258
BspPI GGATC 2 cut(s) 1420, 1702
BsrDI GCAATG 4 cut(s) 25, 784, 1902, 1935
BsrFI RCCGGY 3 cut(s) 188, 392, 739
BsrI ACTGG 3 cut(s) 943, 1043, 2397
BssAI RCCGGY 3 cut(s) 188, 392, 739
BssECI CCNNGG 5 cut(s) 199, 450, 1087, 2059, 2164
BssMI GATC 7 cut(s) 358, 409, 1412, 1477, 1694, 1777, 2053
BssNI GRCGYC 2 cut(s) 396, 875
BssT1I CCWWGG 4 cut(s) 450, 1087, 2059, 2164
Bst4CI ACNGT 4 cut(s) 289, 826, 1624, 1721
Bst6I CTCTTC 1 cut(s) 281
BstACI GRCGYC 2 cut(s) 396, 875
BstBAI YACGTR 1 cut(s) 520
BstDEI CTNAG 6 cut(s) 26, 597, 750, 1508, 1577, 1788
BstDSI CCRYGG 3 cut(s) 450, 1087, 2164
BstF5I GGATG 9 cut(s) 33, 228, 517, 766, 850, 1181, 1210, 1822, 2007
BstFNI CGCG 1 cut(s) 41
BstHHI GCGC 3 cut(s) 43, 221, 749
BstKTI GATC 7 cut(s) 361, 412, 1415, 1480, 1697, 1780, 2056
BstMAI GTCTC 6 cut(s) 214, 1282, 1423, 1438, 2383, 2392
BstMBI GATC 7 cut(s) 358, 409, 1412, 1477, 1694, 1777, 2053
BstMCI CGRYCG 1 cut(s) 361
BstMWI GCNNNNNNNGC 7 cut(s) 15, 755, 1238, 1247, 1864, 2070, 2189
BstNSI RCATGY 5 cut(s) 1039, 1456, 2110, 2157, 2257
BstSCI CCNGG 1 cut(s) 199
BstSNI TACGTA 1 cut(s) 520
BstUI CGCG 1 cut(s) 41
BstV1I GCAGC 3 cut(s) 216, 941, 2204
BstV2I GAAGAC 1 cut(s) 421
BstX2I RGATCY 3 cut(s) 1412, 1477, 1694
BstXI CCANNNNNNTGG 1 cut(s) 2375
BstYI RGATCY 3 cut(s) 1412, 1477, 1694
BsuRI GGCC 7 cut(s) 192, 665, 709, 1167, 1770, 2064, 2073
BtgI CCRYGG 3 cut(s) 450, 1087, 2164
BtgZI GCGATG 1 cut(s) 328
BtsCI GGATG 9 cut(s) 33, 228, 517, 766, 850, 1181, 1210, 1822, 2007
BtsI GCAGTG 2 cut(s) 648, 1872
BtsIMutI CAGTG 4 cut(s) 648, 1532, 1620, 1872
BveI ACCTGC 4 cut(s) 808, 874, 1591, 2258
CfoI GCGC 3 cut(s) 43, 221, 749
Cfr10I RCCGGY 3 cut(s) 188, 392, 739
Cfr13I GGNCC 1 cut(s) 385
CseI GACGC 4 cut(s) 196, 385, 578, 864
Csp6I GTAC 4 cut(s) 813, 1456, 2117, 2233
CviQI GTAC 4 cut(s) 813, 1456, 2117, 2233
DdeI CTNAG 6 cut(s) 26, 597, 750, 1508, 1577, 1788
DpnI GATC 7 cut(s) 360, 411, 1414, 1479, 1696, 1779, 2055
DpnII GATC 7 cut(s) 358, 409, 1412, 1477, 1694, 1777, 2053
DrdI GACNNNNNNGTC 1 cut(s) 287
DseDI GACNNNNNNGTC 1 cut(s) 287
EaeI YGGCCR 2 cut(s) 1768, 2062
Eam1104I CTCTTC 1 cut(s) 281
EarI CTCTTC 1 cut(s) 281
EciI GGCGGA 2 cut(s) 124, 389
Eco105I TACGTA 1 cut(s) 520
Eco130I CCWWGG 4 cut(s) 450, 1087, 2059, 2164
Eco147I AGGCCT 1 cut(s) 665
Eco47I GGWCC 1 cut(s) 385
EcoRI GAATTC 1 cut(s) 2404
EcoT14I CCWWGG 4 cut(s) 450, 1087, 2059, 2164
EcoT22I ATGCAT 1 cut(s) 1617
ErhI CCWWGG 4 cut(s) 450, 1087, 2059, 2164
Esp3I CGTCTC 1 cut(s) 214
FaqI GGGAC 2 cut(s) 275, 581
FauI CCCGC 5 cut(s) 265, 275, 308, 548, 1354
Fnu4HI GCNGC 6 cut(s) 138, 205, 261, 271, 930, 2193
FokI GGATG 9 cut(s) 20, 215, 524, 773, 857, 1168, 1217, 1829, 2014
Fsp4HI GCNGC 6 cut(s) 138, 205, 261, 271, 930, 2193
FspBI CTAG 5 cut(s) 497, 563, 1058, 1475, 1859
GlaI GCGC 3 cut(s) 42, 220, 748
GluI GCNGC 6 cut(s) 138, 205, 261, 271, 930, 2193
GsaI CCCAGC 1 cut(s) 2347
GsuI CTGGAG 2 cut(s) 491, 2414
HaeIII GGCC 7 cut(s) 192, 665, 709, 1167, 1770, 2064, 2073
HapII CCGG 6 cut(s) 189, 201, 367, 393, 740, 1771
HgaI GACGC 4 cut(s) 196, 385, 578, 864
HhaI GCGC 3 cut(s) 43, 221, 749
Hin1I GRCGYC 2 cut(s) 396, 875
Hin6I GCGC 3 cut(s) 41, 219, 747
HinP1I GCGC 3 cut(s) 41, 219, 747
HinfI GANTC 9 cut(s) 446, 506, 1115, 1571, 1687, 1922, 2160, 2353, 2426
HpaII CCGG 6 cut(s) 189, 201, 367, 393, 740, 1771
Hpy166II GTNNAC 3 cut(s) 478, 517, 1367
Hpy188III TCNNGA 3 cut(s) 367, 460, 2357
Hpy8I GTNNAC 3 cut(s) 478, 517, 1367
Hpy99I CGWCG 3 cut(s) 359, 410, 880
HpyAV CCTTC 6 cut(s) 256, 319, 346, 457, 571, 865
HpyCH4III ACNGT 4 cut(s) 289, 826, 1624, 1721
HpyCH4IV ACGT 1 cut(s) 519
HpyF10VI GCNNNNNNNGC 7 cut(s) 15, 755, 1238, 1247, 1864, 2070, 2189
HpyF3I CTNAG 6 cut(s) 26, 597, 750, 1508, 1577, 1788
HpySE526I ACGT 1 cut(s) 519
Hsp92I GRCGYC 2 cut(s) 396, 875
HspAI GCGC 3 cut(s) 41, 219, 747
Kpn2I TCCGGA 1 cut(s) 366
Kzo9I GATC 7 cut(s) 358, 409, 1412, 1477, 1694, 1777, 2053
LmnI GCTCC 1 cut(s) 968
Lsp1109I GCAGC 3 cut(s) 216, 941, 2204
LweI GCATC 5 cut(s) 595, 1190, 1602, 1992, 2113
MaeI CTAG 5 cut(s) 497, 563, 1058, 1475, 1859
MaeII ACGT 1 cut(s) 519
MaeIII GTNAC 4 cut(s) 674, 820, 1021, 1324
MalI GATC 7 cut(s) 360, 411, 1414, 1479, 1696, 1779, 2055
MboI GATC 7 cut(s) 358, 409, 1412, 1477, 1694, 1777, 2053
MboII GAAGA 9 cut(s) 268, 421, 988, 1331, 1334, 1916, 2093, 2291, 2335
MfeI CAATTG 1 cut(s) 2112
MflI RGATCY 3 cut(s) 1412, 1477, 1694
MmeI TCCRAC 5 cut(s) 808, 842, 1248, 1258, 2362
Mph1103I ATGCAT 1 cut(s) 1617
MroI TCCGGA 1 cut(s) 366
MseI TTAA 8 cut(s) 5, 492, 1008, 1142, 1497, 2100, 2208, 2213
MslI CAYNNNNRTG 3 cut(s) 18, 789, 1173
MspA1I CMGCKG 1 cut(s) 2343
MspI CCGG 6 cut(s) 189, 201, 367, 393, 740, 1771
MspR9I CCNGG 1 cut(s) 201
MunI CAATTG 1 cut(s) 2112
Mva1269I GAATGC 4 cut(s) 931, 1234, 1803, 1860
MvnI CGCG 1 cut(s) 41
MwoI GCNNNNNNNGC 7 cut(s) 15, 755, 1238, 1247, 1864, 2070, 2189
NciI CCSGG 1 cut(s) 201
NcoI CCATGG 3 cut(s) 450, 1087, 2164
NdeII GATC 7 cut(s) 358, 409, 1412, 1477, 1694, 1777, 2053
NmeAIII GCCGAG 2 cut(s) 2090, 2221
NmuCI GTSAC 3 cut(s) 820, 1021, 1324
NsiI ATGCAT 1 cut(s) 1617
NspI RCATGY 5 cut(s) 1039, 1456, 2110, 2157, 2257
PaeI GCATGC 1 cut(s) 2110
PaqCI CACCTGC 2 cut(s) 808, 1591
PceI AGGCCT 1 cut(s) 665
PciI ACATGT 2 cut(s) 1452, 2253
PcsI WCGNNNNNNNCGW 4 cut(s) 285, 351, 536, 620
PctI GAATGC 4 cut(s) 931, 1234, 1803, 1860
PfeI GAWTC 9 cut(s) 446, 506, 1115, 1571, 1687, 1922, 2160, 2353, 2426
PflMI CCANNNNNTGG 1 cut(s) 2133
PkrI GCNGC 6 cut(s) 139, 206, 262, 272, 931, 2194
Ple19I CGATCG 1 cut(s) 361
Ppu21I YACGTR 1 cut(s) 520
PscI ACATGT 2 cut(s) 1452, 2253
PshBI ATTAAT 1 cut(s) 2100
PspFI CCCAGC 1 cut(s) 2343
PspPI GGNCC 1 cut(s) 385
PsuI RGATCY 3 cut(s) 1412, 1477, 1694
PvuI CGATCG 1 cut(s) 361
PvuII CAGCTG 1 cut(s) 2343
RsaI GTAC 4 cut(s) 814, 1457, 2118, 2234
RsaNI GTAC 4 cut(s) 813, 1456, 2117, 2233
RseI CAYNNNNRTG 3 cut(s) 18, 789, 1173
SaqAI TTAA 8 cut(s) 5, 492, 1008, 1142, 1497, 2100, 2208, 2213
SatI GCNGC 6 cut(s) 138, 205, 261, 271, 930, 2193
Sau3AI GATC 7 cut(s) 358, 409, 1412, 1477, 1694, 1777, 2053
Sau96I GGNCC 1 cut(s) 385
ScrFI CCNGG 1 cut(s) 201
SfaNI GCATC 5 cut(s) 595, 1190, 1602, 1992, 2113
SfiI GGCCNNNNNGGCC 1 cut(s) 2070
SgrAI CRCCGGYG 1 cut(s) 392
SinI GGWCC 1 cut(s) 385
SmiMI CAYNNNNRTG 3 cut(s) 18, 789, 1173
SmlI CTYRAG 1 cut(s) 1262
SmoI CTYRAG 1 cut(s) 1262
SnaBI TACGTA 1 cut(s) 520
SphI GCATGC 1 cut(s) 2110
SseBI AGGCCT 1 cut(s) 665
SspI AATATT 1 cut(s) 1216
SspMI CTAG 5 cut(s) 497, 563, 1058, 1475, 1859
StuI AGGCCT 1 cut(s) 665
StyD4I CCNGG 1 cut(s) 199
StyI CCWWGG 4 cut(s) 450, 1087, 2059, 2164
TaaI ACNGT 4 cut(s) 289, 826, 1624, 1721
TaiI ACGT 1 cut(s) 522
TaqI TCGA 9 cut(s) 279, 354, 405, 878, 989, 1486, 2019, 2158, 2356
TauI GCSGC 3 cut(s) 140, 263, 273
TfiI GAWTC 9 cut(s) 446, 506, 1115, 1571, 1687, 1922, 2160, 2353, 2426
Tru1I TTAA 8 cut(s) 5, 492, 1008, 1142, 1497, 2100, 2208, 2213
Tru9I TTAA 8 cut(s) 5, 492, 1008, 1142, 1497, 2100, 2208, 2213
TscAI CASTG 4 cut(s) 648, 1539, 1627, 1879
TseFI GTSAC 3 cut(s) 820, 1021, 1324
TseI GCWGC 3 cut(s) 204, 929, 2192
Tsp45I GTSAC 3 cut(s) 820, 1021, 1324
TspGWI ACGGA 2 cut(s) 411, 589
TspRI CASTG 4 cut(s) 648, 1539, 1627, 1879
Van91I CCANNNNNTGG 1 cut(s) 2133
VpaK11BI GGWCC 1 cut(s) 385
VspI ATTAAT 1 cut(s) 2100
XapI RAATTY 3 cut(s) 1311, 1386, 2404
XceI RCATGY 5 cut(s) 1039, 1456, 2110, 2157, 2257
XspI CTAG 5 cut(s) 497, 563, 1058, 1475, 1859
Zsp2I ATGCAT 1 cut(s) 1617
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.