Rmu_sc0000929.1_g000048

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000929.1
Physical Location & Seq
Reverse (-)
167595 .. 169787
2193 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000929.1_g000048.1.cds

Sequence Viewer

Length: 2193 bp
atgttaaaccaccaccgcaatgtcctcagacacttccacccgccgccgctgttctcaatctcctccctctctctttccaccaccaccacaaaaccaaccccaactcaccctcactccaatctcctcacactcacctccaacgcccaaaccctccaccaaaccaagcaactccacgctctctctctcctccacgccctactcccccacagcgtctccctctgcgcctccctcatgctctcctacgccaccttcaactcccccgacgcctctcgccgcctctttaatcgaaccgttaagtattgccgcaccgctttcttgtggaacacgctcataagagcctgctccattgctcaggtggacgatcggtttcggacttacaatcaaatggttcggagcggcgtgcagctcgatgatcacagctttcctttcgtcatcaaggcctgttcggactctatggaggtgaacaaggggatggaggttcatggcgtggtggttaaactagggtttgattcagatgtttacgtggggaacacgcttctttcgttttatggtaactgtgggaaactaagggatgcacggaaggtgtttgatgaaatgactgagagagatgttgtgtcgtggaatacgattatcggggtgttttcggtgaatggtggttacgttgatgcactgcattgttatagggagatgaatttgggaattgggtgtaggccgaatgttgtgagtgttattagtgcattgccggtttgcgcagagcttgcggatgaggtgatggcggttcagatacattgctatgttgtgaagtctggtttgggtacgcaggtgactattgggaatgcattggttgatgtgtatggcaagtgttggaatgtgaaggcgtcgaaacaggtttttgatgagatgggtcagcggaatgaggtttcttggaatgcagctattactagtctttcttatgtggggaataacagggaagcattggatacatttaggttgatgattgatgtaggggttaaaccaaactctgtcaccatttccagcatgctaccagttttggttgaacttgacttatttggagttggtaaagagctccatggtttctgtataagaatgggtattgaatcagacgtttttattggcaactcattaattgatatgtatgcaaaatcaggccattcacatgaggcgtccaatgtgttccgagagatggatgaaaggaatattgtttcttggaatgctatgattgctaattttgctcaaaacaggcttgagttggaagcagttggacttgtgagacaaatgcaagctcatggtgaaattcccaattctgtcaccatcacaaatcttcttccagcttgtgcacggttgggttcccttcgccttgggaaagaaattcatgcaagcacaattcgcatgggatctgcctctgatttgtttgtctctaatgctctcacagacatgtacgcaaaatgtggctggctagatcttgctcgaaatgtctttaacatatcccatagagacgaggtgtcctacaacacactgataataggttattctcagaccacagattgctctgaatctctaagtttgttttctgaaatgaagctggtgggcatgatgcatgacattgtttcatttgtgggagttatatcagcttgcgcaaatctaaatgcagtcaagcaaggcaaagagatccatggatctgtaataagaaagctttttgactctcatctctttgttgcaaactcacttctggatttctataccaaatctggccgaatttatcttgctactaaggtctttgaccgcatttccaagaaggatgtagcctcctggaatactatgattttgggatatggaatgctaggtgagcttgacactgcaatcagcttctttgaagcaatgagggaagatggtgtagaatatgattctgtttcatacattgcagttttgtcatcttgtagtcatggggggttagttgagaagggcaaaagatactttgacgggatgctggcacaaaatattgagcctacacaaaagcactatgcgtgcatggttgatctccttggccgagctggcctcatggaagaagcagtagaacttattaaaggcatgccaattgtaccagatgccaacatttggggttctttacttggagcatgtcgaatccatgggaacatagagttggcaagttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

730

Amino Acids

80.66

Weight (kDa)

6.43

Isoelectric Point (pI)

31.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013595)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 811
Acc16I TGCGCA 2 cut(s) 751, 1657
Acc36I ACCTGC 1 cut(s) 811
AccB7I CCANNNNNTGG 1 cut(s) 2136
AccBSI CCGCTC 1 cut(s) 396
AclWI GGATC 3 cut(s) 1423, 1684, 1705
AcoI YGGCCR 2 cut(s) 1771, 2065
AcsI RAATTY 4 cut(s) 691, 1314, 1389, 1776
AcyI GRCGYC 3 cut(s) 264, 878, 1184
AfaI GTAC 3 cut(s) 817, 1460, 2121
AfiI CCNNNNNNNGG 2 cut(s) 1204, 2136
AflIII ACRYGT 1 cut(s) 1455
AgsI TTSAA 4 cut(s) 253, 1058, 1118, 1895
AhdI GACNNNNNGTC 1 cut(s) 1522
AhlI ACTAGT 1 cut(s) 941
AjnI CCWGG 1 cut(s) 1829
AjuI GAANNNNNNNTTGG 3 cut(s) 794, 826, 2165
Alw21I GWGCWC 2 cut(s) 1089, 1360
Alw26I GTCTC 4 cut(s) 217, 1285, 1441, 1509
Alw44I GTGCAC 1 cut(s) 1356
AlwI GGATC 3 cut(s) 1423, 1684, 1705
AoxI GGCC 6 cut(s) 438, 710, 1168, 1771, 2065, 2074
ApaLI GTGCAC 1 cut(s) 1356
ApeKI GCWGC 2 cut(s) 403, 932
ApoI RAATTY 4 cut(s) 691, 1314, 1389, 1776
AseI ATTAAT 1 cut(s) 1145
AspLEI GCGC 3 cut(s) 224, 752, 1658
BaeGI GKGCMC 1 cut(s) 1360
BaeI ACNNNNGTAYC 2 cut(s) 807, 840
BanII GRGCYC 1 cut(s) 1089
Bbv12I GWGCWC 2 cut(s) 1089, 1360
BbvI GCAGC 2 cut(s) 415, 944
BccI CCATC 6 cut(s) 466, 766, 895, 1198, 1340, 1904
BciT130I CCWGG 1 cut(s) 1831
BciVI GTATCC 1 cut(s) 973
BclI TGATCA 1 cut(s) 412
BcoDI GTCTC 4 cut(s) 217, 1285, 1441, 1509
BcuI ACTAGT 1 cut(s) 941
BfaI CTAG 4 cut(s) 500, 942, 1478, 1862
BfuAI ACCTGC 1 cut(s) 811
BfuI GTATCC 1 cut(s) 973
BglI GCCNNNNNGGC 1 cut(s) 2073
BglII AGATCT 1 cut(s) 1480
BisI GCNGC 7 cut(s) 44, 47, 274, 304, 397, 404, 933
BlsI GCNGC 7 cut(s) 45, 48, 275, 305, 398, 405, 934
Bme1390I CCNGG 1 cut(s) 1831
BmeRI GACNNNNNGTC 1 cut(s) 1522
BmiI GGNNCC 1 cut(s) 1369
BmrFI CCNGG 1 cut(s) 1831
BmsI GCATC 5 cut(s) 562, 655, 1605, 1995, 2116
BplI GAGNNNNNCTC 2 cut(s) 2061, 2093
Bpu10I CCTNAGC 1 cut(s) 351
BpuEI CTTGAG 1 cut(s) 1286
BsaAI YACGTR 1 cut(s) 523
BsaHI GRCGYC 3 cut(s) 264, 878, 1184
BsaJI CCNNGG 5 cut(s) 1090, 1378, 1693, 2062, 2167
BsaXI ACNNNNNCTCC 4 cut(s) 98, 128, 197, 227
Bsc4I CCNNNNNNNGG 2 cut(s) 1204, 2136
Bse118I RCCGGY 1 cut(s) 742
Bse1I ACTGG 1 cut(s) 1046
Bse3DI GCAATG 6 cut(s) 25, 345, 737, 787, 1905, 1938
BseBI CCWGG 1 cut(s) 1831
BseDI CCNNGG 5 cut(s) 1090, 1378, 1693, 2062, 2167
BseGI GGATG 6 cut(s) 477, 577, 769, 1213, 1825, 2010
BseLI CCNNNNNNNGG 2 cut(s) 1204, 2136
BseMI GCAATG 6 cut(s) 25, 345, 737, 787, 1905, 1938
BseMII CTCAG 4 cut(s) 40, 365, 591, 1568
BseNI ACTGG 1 cut(s) 1046
BseRI GAGGAG 3 cut(s) 52, 113, 176
BseSI GKGCMC 1 cut(s) 1360
BseXI GCAGC 2 cut(s) 415, 944
BsgI GTGCAG 1 cut(s) 422
Bsh1285I CGRYCG 1 cut(s) 364
BshFI GGCC 6 cut(s) 440, 712, 1170, 1773, 2067, 2076
BsiEI CGRYCG 1 cut(s) 364
BsiHKAI GWGCWC 2 cut(s) 1089, 1360
BsiSI CCGG 1 cut(s) 743
BslI CCNNNNNNNGG 2 cut(s) 1204, 2136
BsmAI GTCTC 4 cut(s) 217, 1285, 1441, 1509
BsmBI CGTCTC 2 cut(s) 217, 1509
BsmI GAATGC 4 cut(s) 841, 934, 1237, 1863
BsnI GGCC 6 cut(s) 440, 712, 1170, 1773, 2067, 2076
Bsp1286I GDGCHC 2 cut(s) 1089, 1360
Bsp143I GATC 7 cut(s) 361, 412, 1415, 1480, 1689, 1697, 2056
Bsp19I CCATGG 3 cut(s) 1090, 1693, 2167
BspANI GGCC 6 cut(s) 440, 712, 1170, 1773, 2067, 2076
BspCNI CTCAG 4 cut(s) 39, 364, 592, 1567
BspLI GGNNCC 1 cut(s) 1369
BspMI ACCTGC 1 cut(s) 811
BspPI GGATC 3 cut(s) 1423, 1684, 1705
BsrBI CCGCTC 1 cut(s) 396
BsrDI GCAATG 6 cut(s) 25, 345, 737, 787, 1905, 1938
BsrFI RCCGGY 1 cut(s) 742
BsrI ACTGG 1 cut(s) 1046
BssAI RCCGGY 1 cut(s) 742
BssECI CCNNGG 5 cut(s) 1090, 1378, 1693, 2062, 2167
BssMI GATC 7 cut(s) 361, 412, 1415, 1480, 1689, 1697, 2056
BssNI GRCGYC 3 cut(s) 264, 878, 1184
BssT1I CCWWGG 5 cut(s) 1090, 1378, 1693, 2062, 2167
Bst2UI CCWGG 1 cut(s) 1831
Bst4CI ACNGT 3 cut(s) 292, 557, 1362
BstACI GRCGYC 3 cut(s) 264, 878, 1184
BstAPI GCANNNNNTGC 1 cut(s) 758
BstBAI YACGTR 1 cut(s) 523
BstDEI CTNAG 7 cut(s) 26, 351, 566, 600, 1554, 1580, 1791
BstDSI CCRYGG 3 cut(s) 1090, 1693, 2167
BstF5I GGATG 6 cut(s) 477, 577, 769, 1213, 1825, 2010
BstHHI GCGC 3 cut(s) 224, 752, 1658
BstKTI GATC 7 cut(s) 364, 415, 1418, 1483, 1692, 1700, 2059
BstMAI GTCTC 4 cut(s) 217, 1285, 1441, 1509
BstMBI GATC 7 cut(s) 361, 412, 1415, 1480, 1689, 1697, 2056
BstMCI CGRYCG 1 cut(s) 364
BstMWI GCNNNNNNNGC 6 cut(s) 758, 1241, 1250, 1407, 1867, 2073
BstNI CCWGG 1 cut(s) 1831
BstNSI RCATGY 4 cut(s) 1042, 1459, 2113, 2160
BstSCI CCNGG 1 cut(s) 1829
BstSLI GKGCMC 1 cut(s) 1360
BstV1I GCAGC 2 cut(s) 415, 944
BstX2I RGATCY 4 cut(s) 1415, 1480, 1689, 1697
BstYI RGATCY 4 cut(s) 1415, 1480, 1689, 1697
BsuI GTATCC 1 cut(s) 973
BsuRI GGCC 6 cut(s) 440, 712, 1170, 1773, 2067, 2076
BtgI CCRYGG 3 cut(s) 1090, 1693, 2167
BtsCI GGATG 6 cut(s) 477, 577, 769, 1213, 1825, 2010
BtsI GCAGTG 2 cut(s) 668, 1875
BtsIMutI CAGTG 3 cut(s) 668, 1535, 1875
BveI ACCTGC 1 cut(s) 811
CfoI GCGC 3 cut(s) 224, 752, 1658
Cfr10I RCCGGY 1 cut(s) 742
CseI GACGC 4 cut(s) 199, 272, 867, 1173
Csp6I GTAC 3 cut(s) 816, 1459, 2120
CviQI GTAC 3 cut(s) 816, 1459, 2120
DdeI CTNAG 7 cut(s) 26, 351, 566, 600, 1554, 1580, 1791
DpnI GATC 7 cut(s) 363, 414, 1417, 1482, 1691, 1699, 2058
DpnII GATC 7 cut(s) 361, 412, 1415, 1480, 1689, 1697, 2056
DriI GACNNNNNGTC 1 cut(s) 1522
EaeI YGGCCR 2 cut(s) 1771, 2065
Eam1105I GACNNNNNGTC 1 cut(s) 1522
Ecl136II GAGCTC 1 cut(s) 1087
Eco130I CCWWGG 5 cut(s) 1090, 1378, 1693, 2062, 2167
Eco147I AGGCCT 1 cut(s) 440
Eco24I GRGCYC 1 cut(s) 1089
Eco53kI GAGCTC 1 cut(s) 1087
EcoICRI GAGCTC 1 cut(s) 1087
EcoRII CCWGG 1 cut(s) 1829
EcoT14I CCWWGG 5 cut(s) 1090, 1378, 1693, 2062, 2167
EcoT22I ATGCAT 2 cut(s) 841, 1620
EcoT38I GRGCYC 1 cut(s) 1089
ErhI CCWWGG 5 cut(s) 1090, 1378, 1693, 2062, 2167
Esp3I CGTCTC 2 cut(s) 217, 1509
FauI CCCGC 1 cut(s) 48
FbaI TGATCA 1 cut(s) 412
Fnu4HI GCNGC 7 cut(s) 44, 47, 274, 304, 397, 404, 933
FokI GGATG 6 cut(s) 484, 584, 776, 1220, 1832, 2017
FriOI GRGCYC 1 cut(s) 1089
Fsp4HI GCNGC 7 cut(s) 44, 47, 274, 304, 397, 404, 933
FspBI CTAG 4 cut(s) 500, 942, 1478, 1862
FspI TGCGCA 2 cut(s) 751, 1657
GlaI GCGC 3 cut(s) 223, 751, 1657
GluI GCNGC 7 cut(s) 44, 47, 274, 304, 397, 404, 933
HaeIII GGCC 6 cut(s) 440, 712, 1170, 1773, 2067, 2076
HapII CCGG 1 cut(s) 743
HgaI GACGC 4 cut(s) 199, 272, 867, 1173
HhaI GCGC 3 cut(s) 224, 752, 1658
Hin1I GRCGYC 3 cut(s) 264, 878, 1184
Hin6I GCGC 3 cut(s) 222, 750, 1656
HinP1I GCGC 3 cut(s) 222, 750, 1656
HindIII AAGCTT 1 cut(s) 1712
HinfI GANTC 7 cut(s) 449, 509, 1118, 1574, 1721, 1925, 2163
HpaII CCGG 1 cut(s) 743
Hpy166II GTNNAC 4 cut(s) 358, 463, 520, 1358
Hpy188III TCNNGA 1 cut(s) 1751
Hpy8I GTNNAC 4 cut(s) 358, 463, 520, 1358
Hpy99I CGWCG 2 cut(s) 266, 883
HpyAV CCTTC 6 cut(s) 259, 574, 868, 1382, 1810, 1975
HpyCH4III ACNGT 3 cut(s) 292, 557, 1362
HpyCH4IV ACGT 3 cut(s) 522, 660, 1125
HpyF10VI GCNNNNNNNGC 6 cut(s) 758, 1241, 1250, 1407, 1867, 2073
HpyF3I CTNAG 7 cut(s) 26, 351, 566, 600, 1554, 1580, 1791
HpySE526I ACGT 3 cut(s) 522, 660, 1125
Hsp92I GRCGYC 3 cut(s) 264, 878, 1184
HspAI GCGC 3 cut(s) 222, 750, 1656
Ksp22I TGATCA 1 cut(s) 412
Kzo9I GATC 7 cut(s) 361, 412, 1415, 1480, 1689, 1697, 2056
LmnI GCTCC 4 cut(s) 347, 393, 1092, 2153
Lsp1109I GCAGC 2 cut(s) 415, 944
LweI GCATC 5 cut(s) 562, 655, 1605, 1995, 2116
MaeI CTAG 4 cut(s) 500, 942, 1478, 1862
MaeII ACGT 3 cut(s) 522, 660, 1125
MaeIII GTNAC 5 cut(s) 551, 656, 823, 1024, 1327
MalI GATC 7 cut(s) 363, 414, 1417, 1482, 1691, 1699, 2058
MbiI CCGCTC 1 cut(s) 396
MboI GATC 7 cut(s) 361, 412, 1415, 1480, 1689, 1697, 2056
MboII GAAGA 4 cut(s) 1334, 1337, 1919, 2096
MfeI CAATTG 1 cut(s) 2115
MflI RGATCY 4 cut(s) 1415, 1480, 1689, 1697
MhlI GDGCHC 2 cut(s) 1089, 1360
MlyI GAGTC 2 cut(s) 443, 1715
MmeI TCCRAC 4 cut(s) 162, 845, 1251, 1261
Mph1103I ATGCAT 2 cut(s) 841, 1620
MseI TTAA 8 cut(s) 5, 282, 294, 495, 1011, 1145, 1500, 2103
MslI CAYNNNNRTG 4 cut(s) 18, 792, 1176, 1454
MspA1I CMGCKG 2 cut(s) 49, 910
MspI CCGG 1 cut(s) 743
MspR9I CCNGG 1 cut(s) 1831
MunI CAATTG 1 cut(s) 2115
Mva1269I GAATGC 4 cut(s) 841, 934, 1237, 1863
MvaI CCWGG 1 cut(s) 1831
MwoI GCNNNNNNNGC 6 cut(s) 758, 1241, 1250, 1407, 1867, 2073
NcoI CCATGG 3 cut(s) 1090, 1693, 2167
NdeII GATC 7 cut(s) 361, 412, 1415, 1480, 1689, 1697, 2056
NlaIV GGNNCC 1 cut(s) 1369
NmeAIII GCCGAG 1 cut(s) 2093
NmuCI GTSAC 3 cut(s) 823, 1024, 1327
NsbI TGCGCA 2 cut(s) 751, 1657
NsiI ATGCAT 2 cut(s) 841, 1620
NspI RCATGY 4 cut(s) 1042, 1459, 2113, 2160
PaeI GCATGC 2 cut(s) 1042, 2113
PaqCI CACCTGC 1 cut(s) 811
PceI AGGCCT 1 cut(s) 440
PciI ACATGT 1 cut(s) 1455
PcsI WCGNNNNNNNCGW 2 cut(s) 539, 623
PctI GAATGC 4 cut(s) 841, 934, 1237, 1863
PfeI GAWTC 5 cut(s) 509, 1118, 1574, 1925, 2163
PflMI CCANNNNNTGG 1 cut(s) 2136
PfoI TCCNGGA 1 cut(s) 1829
PkrI GCNGC 7 cut(s) 45, 48, 275, 305, 398, 405, 934
Ple19I CGATCG 1 cut(s) 364
PleI GAGTC 2 cut(s) 443, 1715
PpsI GAGTC 2 cut(s) 443, 1715
Ppu21I YACGTR 1 cut(s) 523
PscI ACATGT 1 cut(s) 1455
PshBI ATTAAT 1 cut(s) 1145
Psp124BI GAGCTC 1 cut(s) 1089
Psp6I CCWGG 1 cut(s) 1829
PspGI CCWGG 1 cut(s) 1829
PspN4I GGNNCC 1 cut(s) 1369
PsuI RGATCY 4 cut(s) 1415, 1480, 1689, 1697
PvuI CGATCG 1 cut(s) 364
RsaI GTAC 3 cut(s) 817, 1460, 2121
RsaNI GTAC 3 cut(s) 816, 1459, 2120
RseI CAYNNNNRTG 4 cut(s) 18, 792, 1176, 1454
SacI GAGCTC 1 cut(s) 1089
SaqAI TTAA 8 cut(s) 5, 282, 294, 495, 1011, 1145, 1500, 2103
SatI GCNGC 7 cut(s) 44, 47, 274, 304, 397, 404, 933
Sau3AI GATC 7 cut(s) 361, 412, 1415, 1480, 1689, 1697, 2056
SchI GAGTC 2 cut(s) 443, 1715
ScrFI CCNGG 1 cut(s) 1831
SduI GDGCHC 2 cut(s) 1089, 1360
SfaNI GCATC 5 cut(s) 562, 655, 1605, 1995, 2116
SfiI GGCCNNNNNGGCC 1 cut(s) 2073
SmiMI CAYNNNNRTG 4 cut(s) 18, 792, 1176, 1454
SmlI CTYRAG 1 cut(s) 1265
SmoI CTYRAG 1 cut(s) 1265
SpeI ACTAGT 1 cut(s) 941
SphI GCATGC 2 cut(s) 1042, 2113
SseBI AGGCCT 1 cut(s) 440
SspI AATATT 2 cut(s) 1219, 2020
SspMI CTAG 4 cut(s) 500, 942, 1478, 1862
SstI GAGCTC 1 cut(s) 1089
StuI AGGCCT 1 cut(s) 440
StyD4I CCNGG 1 cut(s) 1829
StyI CCWWGG 5 cut(s) 1090, 1378, 1693, 2062, 2167
TaaI ACNGT 3 cut(s) 292, 557, 1362
TaiI ACGT 3 cut(s) 525, 663, 1128
TaqI TCGA 5 cut(s) 286, 408, 881, 1489, 2161
TauI GCSGC 5 cut(s) 46, 49, 276, 306, 399
TfiI GAWTC 5 cut(s) 509, 1118, 1574, 1925, 2163
Tru1I TTAA 8 cut(s) 5, 282, 294, 495, 1011, 1145, 1500, 2103
Tru9I TTAA 8 cut(s) 5, 282, 294, 495, 1011, 1145, 1500, 2103
TscAI CASTG 3 cut(s) 675, 1542, 1882
TseFI GTSAC 3 cut(s) 823, 1024, 1327
TseI GCWGC 2 cut(s) 403, 932
Tsp45I GTSAC 3 cut(s) 823, 1024, 1327
TspDTI ATGAA 8 cut(s) 470, 606, 704, 1224, 1382, 1613, 1620, 1923
TspGWI ACGGA 1 cut(s) 592
TspRI CASTG 3 cut(s) 675, 1542, 1882
Van91I CCANNNNNTGG 1 cut(s) 2136
VneI GTGCAC 1 cut(s) 1356
VspI ATTAAT 1 cut(s) 1145
XapI RAATTY 4 cut(s) 691, 1314, 1389, 1776
XceI RCATGY 4 cut(s) 1042, 1459, 2113, 2160
XcmI CCANNNNNNNNNTGG 1 cut(s) 352
XspI CTAG 4 cut(s) 500, 942, 1478, 1862
Zsp2I ATGCAT 2 cut(s) 841, 1620
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.