Rw2G018970

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0013595
Physical Location & Seq
Forward (+)
24878782 .. 24894695
15914 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G018970.1

Sequence Viewer

Length: 2439 bp
ATGTTAAACCACCACCGCAATGTCCTCAGACACTTCCACCCGCCACCGCTATTCTCAATCTCCTCCCTCTCTCTCTCCACCACCACCACCACAAAACCAACCCCAACTCACCCTCACTCCAATCTCCTCACACTCACCTCCAACGCCCAAACCCTCCACCAAACCAAGCAACTCCACGCTCTCTCTCTCCTCCACGCCCTACTCCCCCACAGCGTCTCCCTCTGCGCCTCCCTCATGCTCACCTACGCCACCTTCAACTCCCCCGACGCCTCTCGCCGCCTCTTTAATCAAACCGTTAAGTATTGCCGCACCGCTTTCTTGTGGAACACGCTCATAAGAGCCTGCTCCATTGCTCAGGTGGACGATCGGTTTCGGACTTACAATCAAATGGTTCGGAGCGGCGTGCAGCTCGATGATCACAGCTTTCCTTTCGTCATCAAGGCCTGTTCGGACTCTATGGCGGTGAAGAAGGGGATGGAGGTTCATGGGGTGGTGGTTAAACTAGGGTTTGATTCGGATGTTTACGTCGGGAACACGCTTCTTTCGTTTTATGGCAACTGTGGGAAACTAAGGGATGCACGGAAGGTGTTTGATGAAATGACTGAGAGAGATGTTGTGTCGTGGAATACGATTATCGGGGTGTTTTCGGTGAATGGGGGTTACGTTGAGGCACTGCATTGTTATAGGGAGATGAATTTGGGAATTGGGTGTAGGCCGAATGTTGTGAGTGTTATTAGTGCATTGCCGGTTTGCACAGAGCTTGCGGATGAGGTGATGGCGGTTCAGATACATTGCTATGTTGTGAAGTCTGGTTTGGGTACGCAGGTGACTATTGGGAATGCATTGGTTGATGTGTATGGCAAGTGTTGGAATGTGAAGGCTTCGAAACTGGTTTTTGATGAGATGAGTCAGCGGAATGAGGTTTCTTGGAATGCAGCTATTACTAGTCTTTCTTATGTGGGGAATAATGTAGAAGCATTGGATACATTTAGGTTGATGATTGATGTAGGGGTTAAACCAAACTCTGTCACCATTTCCAGCATGCTACCAGTTTTGGTTGAACTTGACTTATTTGGAGTTGGTAAAGAGCTCCATGGTTTCTGTATACGAATGGGTATTGAATCTGACGTTTTTATTGGCAACTCATTAATTGATATGTATGCAAAATCGGGCCATTCACATGAGGCGACCAATGCGTTCCGAGAGATGGATGAAAGGAATATTGTTTCTTGGAATGCCATGATTGCTAATTTTGCTCAAAACAGGCTTGAGTTGGAAGCAGTTGGACTTGTGAGACAAATGCAAGCTCAAGGTGAAATTCCCAATTCTGTCACCATCACAAATCTTCTTCCAGCTTGTGCACGGTTGGGTTCCCTTCGCCTTGGGAAAGAAATTCATGCAAGCACAATTCGCATGGGAACTGCCTCTGATTTGTTTGTCTCTAATGCTCTCACAGACATGTACGCAAAATGTGGCTGGCTAGATCTTGCTCGAACTGTCTTTAACATATCCCTTAGAGACGAGGTGTCCTACAACACACTGATAATAGGTTATTCTCAGACCACAGATTGCTCTGAATCTCTAAGTTTGTTTTCTGAAATGAAGCTGGTGGGCATGATGCATGACATTGTTTCATTTGTGGGAGTTATATCAGCTTGCGCAAATCTAACTGCAGTCAAGCAAGGCAAAGAGATTCATGGATCTGTAATAAGAAAGCTTTTTGACTCTCATCTCTTTGTTGCAAACTCACTTCTGGATTTCTATACCAAATCTGGCCGAATTGATCTTGCTACTAAGGTCTTTGACCGCATTTCCAACAAGGATGTAGCCTCCTGGAATACTATGATTTTGGGATATGGAATGCTAGGTGAGCTTGACACTGCAATCAGCTTCTTTGAAGCAATGAGGGAAGATGGTGTAGAATATGATTCTGTTTCATACATTGCAGTTTTGTCATCTTGTAGTCATGGGGGGTTAGTTGAGAAGGGCAAAAGATACTTTGAGGGGATGCTGGCACAAAATATTGAGCCTACACAAAAGCACTATGCGTGCATGGTCGATCTCCTTGGCCGAGCTGGCCTCATGGAAGAAGCAGTAGAACTTATTAAAGGCATGCCAATTGTACCAGATGCCAACATTTGGGGTTCTTTACTTGGAGCATGTCGAATCCATGGGAACATAGAGTTGGCGAGTTGGGCAGCAGAGTATCTGTTTAAGTTAAAACCTGACCATTGTGGGTACTATATACTGCTTTCTAACGTGTATGCAGAAGCAGGTAGATGGGAAGATGTAAAGAGGGTGAGGGAATTGATGAAGTCAAGGGGATTGAAGAAAAATCCTGCTTACAGTTGGGTTCAGATGCGAGACGAGGTGCATGCTTTCAGAGTTGGAGAGAGACTGGAGAGACTGAATTCAGATTGCTGGCTGGCAGAATCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

812

Amino Acids

90.26

Weight (kDa)

6.44

Isoelectric Point (pI)

32.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 306 - 350 8.4e-07 PPR repeat family
PPR_2 PF13041 406 - 455 1.5e-06 PPR repeat family
PPR_2 PF13041 507 - 555 2.5e-06 PPR repeat family
PPR_2 PF13041 607 - 655 7.7e-09 PPR repeat family
PPR PF01535 611 - 640 3.1e-06 PPR repeat
E_motif PF20431 724 - 786 2.3e-20 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013595)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20891
malus_domestica MD15G1186900.v1.1
prunus_persica Prupe.6G186500_v2.0.a1
pyrus_communis pycom15g16750
rosa_chinensis RchiOBHm_Chr2g0113511
rosa_laevigata RLG00000018071
rosa_multiflora Rmu_sc0000929.1_g000048 Rmu_sc0007415.1_g000023
rosa_roxburghii Rroxscaffold_2G00129180 Rroxscaffold_2G00129970
rosa_rugosa Rorug02G0187900 Rorug02G0188000
rosa_samantha Rh2AG242600 Rh2BG256500 Rh2CG246800 Rh2CG246900 Rh2DG250600
rosa_wichuraiana Rw2G018970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 814
Acc16I TGCGCA 1 cut(s) 1660
Acc36I ACCTGC 2 cut(s) 814, 2264
AccB7I CCANNNNNTGG 1 cut(s) 2139
AccBSI CCGCTC 1 cut(s) 399
AccI GTMKAC 1 cut(s) 1105
AclWI GGATC 1 cut(s) 1708
AcoI YGGCCR 2 cut(s) 1774, 2068
AcsI RAATTY 4 cut(s) 694, 1317, 1392, 2410
AcyI GRCGYC 1 cut(s) 267
AfaI GTAC 4 cut(s) 820, 1463, 2124, 2240
AfiI CCNNNNNNNGG 2 cut(s) 1207, 2139
AflIII ACRYGT 2 cut(s) 1458, 2259
AgsI TTSAA 5 cut(s) 256, 1061, 1121, 1898, 2329
AhdI GACNNNNNGTC 1 cut(s) 1525
AhlI ACTAGT 1 cut(s) 944
AjnI CCWGG 1 cut(s) 1832
AjuI GAANNNNNNNTTGG 4 cut(s) 797, 829, 2168, 2200
Alw21I GWGCWC 2 cut(s) 1092, 1363
Alw26I GTCTC 7 cut(s) 220, 1288, 1444, 1512, 2358, 2389, 2398
Alw44I GTGCAC 1 cut(s) 1359
AlwI GGATC 1 cut(s) 1708
AoxI GGCC 6 cut(s) 441, 713, 1171, 1774, 2068, 2077
ApaLI GTGCAC 1 cut(s) 1359
ApeKI GCWGC 3 cut(s) 406, 935, 2198
ApoI RAATTY 4 cut(s) 694, 1317, 1392, 2410
AseI ATTAAT 1 cut(s) 1148
AspLEI GCGC 2 cut(s) 227, 1661
AspS9I GGNCC 1 cut(s) 1171
AsuII TTCGAA 1 cut(s) 884
BaeGI GKGCMC 1 cut(s) 1363
BaeI ACNNNNGTAYC 2 cut(s) 810, 843
BanII GRGCYC 1 cut(s) 1092
Bbv12I GWGCWC 2 cut(s) 1092, 1363
BbvI GCAGC 3 cut(s) 418, 947, 2210
BccI CCATC 6 cut(s) 469, 769, 1201, 1343, 1907, 2274
BcgI CGANNNNNNTGC 2 cut(s) 2357, 2391
BciT130I CCWGG 1 cut(s) 1834
BciVI GTATCC 1 cut(s) 976
BclI TGATCA 1 cut(s) 415
BcoDI GTCTC 7 cut(s) 220, 1288, 1444, 1512, 2358, 2389, 2398
BcuI ACTAGT 1 cut(s) 944
BfaI CTAG 4 cut(s) 503, 945, 1481, 1865
BfmI CTRYAG 1 cut(s) 1671
BfuAI ACCTGC 2 cut(s) 814, 2264
BfuI GTATCC 1 cut(s) 976
BglI GCCNNNNNGGC 1 cut(s) 2076
BglII AGATCT 1 cut(s) 1483
BisI GCNGC 6 cut(s) 277, 307, 400, 407, 936, 2199
BlsI GCNGC 6 cut(s) 278, 308, 401, 408, 937, 2200
Bme1390I CCNGG 1 cut(s) 1834
BmeRI GACNNNNNGTC 1 cut(s) 1525
BmgT120I GGNCC 1 cut(s) 1171
BmiI GGNNCC 1 cut(s) 1372
BmrFI CCNGG 1 cut(s) 1834
BmsI GCATC 5 cut(s) 565, 1608, 1998, 2119, 2349
BplI GAGNNNNNCTC 2 cut(s) 2064, 2096
BpmI CTGGAG 1 cut(s) 2420
Bpu10I CCTNAGC 1 cut(s) 354
Bpu14I TTCGAA 1 cut(s) 884
BpuEI CTTGAG 2 cut(s) 1289, 1293
BsaHI GRCGYC 1 cut(s) 267
BsaJI CCNNGG 4 cut(s) 1093, 1381, 2065, 2170
BsaXI ACNNNNNCTCC 4 cut(s) 101, 131, 200, 230
Bsc4I CCNNNNNNNGG 2 cut(s) 1207, 2139
Bse118I RCCGGY 1 cut(s) 745
Bse1I ACTGG 3 cut(s) 894, 1049, 2403
Bse3DI GCAATG 6 cut(s) 25, 348, 740, 790, 1908, 1941
BseBI CCWGG 1 cut(s) 1834
BseDI CCNNGG 4 cut(s) 1093, 1381, 2065, 2170
BseGI GGATG 7 cut(s) 480, 523, 580, 772, 1216, 1828, 2013
BseLI CCNNNNNNNGG 2 cut(s) 1207, 2139
BseMI GCAATG 6 cut(s) 25, 348, 740, 790, 1908, 1941
BseMII CTCAG 4 cut(s) 40, 368, 594, 1571
BseNI ACTGG 3 cut(s) 894, 1049, 2403
BseRI GAGGAG 3 cut(s) 52, 116, 179
BseSI GKGCMC 1 cut(s) 1363
BseXI GCAGC 3 cut(s) 418, 947, 2210
BsgI GTGCAG 1 cut(s) 425
Bsh1285I CGRYCG 1 cut(s) 367
BshFI GGCC 6 cut(s) 443, 715, 1173, 1776, 2070, 2079
BsiEI CGRYCG 1 cut(s) 367
BsiHKAI GWGCWC 2 cut(s) 1092, 1363
BsiSI CCGG 1 cut(s) 746
BslI CCNNNNNNNGG 2 cut(s) 1207, 2139
BsmAI GTCTC 7 cut(s) 220, 1288, 1444, 1512, 2358, 2389, 2398
BsmBI CGTCTC 3 cut(s) 220, 1512, 2358
BsmI GAATGC 4 cut(s) 844, 937, 1240, 1866
BsnI GGCC 6 cut(s) 443, 715, 1173, 1776, 2070, 2079
Bsp119I TTCGAA 1 cut(s) 884
Bsp1286I GDGCHC 2 cut(s) 1092, 1363
Bsp143I GATC 6 cut(s) 364, 415, 1483, 1700, 1783, 2059
Bsp19I CCATGG 2 cut(s) 1093, 2170
BspANI GGCC 6 cut(s) 443, 715, 1173, 1776, 2070, 2079
BspCNI CTCAG 4 cut(s) 39, 367, 595, 1570
BspLI GGNNCC 1 cut(s) 1372
BspMAI CTGCAG 1 cut(s) 1675
BspMI ACCTGC 2 cut(s) 814, 2264
BspPI GGATC 1 cut(s) 1708
BspT104I TTCGAA 1 cut(s) 884
BsrBI CCGCTC 1 cut(s) 399
BsrDI GCAATG 6 cut(s) 25, 348, 740, 790, 1908, 1941
BsrFI RCCGGY 1 cut(s) 745
BsrI ACTGG 3 cut(s) 894, 1049, 2403
BssAI RCCGGY 1 cut(s) 745
BssECI CCNNGG 4 cut(s) 1093, 1381, 2065, 2170
BssMI GATC 6 cut(s) 364, 415, 1483, 1700, 1783, 2059
BssNAI GTATAC 1 cut(s) 1106
BssNI GRCGYC 1 cut(s) 267
BssT1I CCWWGG 4 cut(s) 1093, 1381, 2065, 2170
Bst1107I GTATAC 1 cut(s) 1106
Bst2UI CCWGG 1 cut(s) 1834
Bst4CI ACNGT 5 cut(s) 295, 560, 1365, 1498, 2348
BstACI GRCGYC 1 cut(s) 267
BstBI TTCGAA 1 cut(s) 884
BstDEI CTNAG 8 cut(s) 26, 354, 569, 603, 1514, 1557, 1583, 1794
BstDSI CCRYGG 2 cut(s) 1093, 2170
BstF5I GGATG 7 cut(s) 480, 523, 580, 772, 1216, 1828, 2013
BstHHI GCGC 2 cut(s) 227, 1661
BstKTI GATC 6 cut(s) 367, 418, 1486, 1703, 1786, 2062
BstMAI GTCTC 7 cut(s) 220, 1288, 1444, 1512, 2358, 2389, 2398
BstMBI GATC 6 cut(s) 364, 415, 1483, 1700, 1783, 2059
BstMCI CGRYCG 1 cut(s) 367
BstMWI GCNNNNNNNGC 7 cut(s) 1193, 1244, 1253, 1410, 1870, 2076, 2195
BstNI CCWGG 1 cut(s) 1834
BstNSI RCATGY 5 cut(s) 1045, 1462, 2116, 2163, 2378
BstSCI CCNGG 1 cut(s) 1832
BstSFI CTRYAG 1 cut(s) 1671
BstSLI GKGCMC 1 cut(s) 1363
BstV1I GCAGC 3 cut(s) 418, 947, 2210
BstX2I RGATCY 2 cut(s) 1483, 1700
BstYI RGATCY 2 cut(s) 1483, 1700
BstZ17I GTATAC 1 cut(s) 1106
BsuI GTATCC 1 cut(s) 976
BsuRI GGCC 6 cut(s) 443, 715, 1173, 1776, 2070, 2079
BtgI CCRYGG 2 cut(s) 1093, 2170
BtsCI GGATG 7 cut(s) 480, 523, 580, 772, 1216, 1828, 2013
BtsI GCAGTG 2 cut(s) 671, 1878
BtsIMutI CAGTG 3 cut(s) 671, 1538, 1878
BveI ACCTGC 2 cut(s) 814, 2264
CfoI GCGC 2 cut(s) 227, 1661
Cfr10I RCCGGY 1 cut(s) 745
Cfr13I GGNCC 1 cut(s) 1171
CseI GACGC 2 cut(s) 202, 275
Csp6I GTAC 4 cut(s) 819, 1462, 2123, 2239
CviQI GTAC 4 cut(s) 819, 1462, 2123, 2239
DdeI CTNAG 8 cut(s) 26, 354, 569, 603, 1514, 1557, 1583, 1794
DpnI GATC 6 cut(s) 366, 417, 1485, 1702, 1785, 2061
DpnII GATC 6 cut(s) 364, 415, 1483, 1700, 1783, 2059
DriI GACNNNNNGTC 1 cut(s) 1525
EaeI YGGCCR 2 cut(s) 1774, 2068
Eam1105I GACNNNNNGTC 1 cut(s) 1525
Ecl136II GAGCTC 1 cut(s) 1090
Eco130I CCWWGG 4 cut(s) 1093, 1381, 2065, 2170
Eco147I AGGCCT 1 cut(s) 443
Eco24I GRGCYC 1 cut(s) 1092
Eco53kI GAGCTC 1 cut(s) 1090
EcoICRI GAGCTC 1 cut(s) 1090
EcoRI GAATTC 1 cut(s) 2410
EcoRII CCWGG 1 cut(s) 1832
EcoT14I CCWWGG 4 cut(s) 1093, 1381, 2065, 2170
EcoT22I ATGCAT 2 cut(s) 844, 1623
EcoT38I GRGCYC 1 cut(s) 1092
ErhI CCWWGG 4 cut(s) 1093, 1381, 2065, 2170
Esp3I CGTCTC 3 cut(s) 220, 1512, 2358
FauI CCCGC 1 cut(s) 48
FbaI TGATCA 1 cut(s) 415
FblI GTMKAC 1 cut(s) 1105
Fnu4HI GCNGC 6 cut(s) 277, 307, 400, 407, 936, 2199
FokI GGATG 7 cut(s) 487, 530, 587, 779, 1223, 1835, 2020
FriOI GRGCYC 1 cut(s) 1092
Fsp4HI GCNGC 6 cut(s) 277, 307, 400, 407, 936, 2199
FspBI CTAG 4 cut(s) 503, 945, 1481, 1865
FspI TGCGCA 1 cut(s) 1660
GlaI GCGC 2 cut(s) 226, 1660
GluI GCNGC 6 cut(s) 277, 307, 400, 407, 936, 2199
GsuI CTGGAG 1 cut(s) 2420
HaeIII GGCC 6 cut(s) 443, 715, 1173, 1776, 2070, 2079
HapII CCGG 1 cut(s) 746
HgaI GACGC 2 cut(s) 202, 275
HhaI GCGC 2 cut(s) 227, 1661
Hin1I GRCGYC 1 cut(s) 267
Hin6I GCGC 2 cut(s) 225, 1659
HinP1I GCGC 2 cut(s) 225, 1659
HindIII AAGCTT 1 cut(s) 1715
HpaII CCGG 1 cut(s) 746
Hpy166II GTNNAC 4 cut(s) 361, 523, 1106, 1361
Hpy188III TCNNGA 2 cut(s) 529, 1754
Hpy8I GTNNAC 4 cut(s) 361, 523, 1106, 1361
Hpy99I CGWCG 2 cut(s) 269, 530
HpyAV CCTTC 6 cut(s) 262, 463, 577, 871, 1385, 1978
HpyCH4III ACNGT 5 cut(s) 295, 560, 1365, 1498, 2348
HpyCH4IV ACGT 4 cut(s) 525, 663, 1128, 2259
HpyF10VI GCNNNNNNNGC 7 cut(s) 1193, 1244, 1253, 1410, 1870, 2076, 2195
HpyF3I CTNAG 8 cut(s) 26, 354, 569, 603, 1514, 1557, 1583, 1794
HpySE526I ACGT 4 cut(s) 525, 663, 1128, 2259
Hsp92I GRCGYC 1 cut(s) 267
HspAI GCGC 2 cut(s) 225, 1659
Ksp22I TGATCA 1 cut(s) 415
Kzo9I GATC 6 cut(s) 364, 415, 1483, 1700, 1783, 2059
LmnI GCTCC 4 cut(s) 350, 396, 1095, 2156
Lsp1109I GCAGC 3 cut(s) 418, 947, 2210
LweI GCATC 5 cut(s) 565, 1608, 1998, 2119, 2349
MaeI CTAG 4 cut(s) 503, 945, 1481, 1865
MaeII ACGT 4 cut(s) 525, 663, 1128, 2259
MaeIII GTNAC 4 cut(s) 659, 826, 1027, 1330
MalI GATC 6 cut(s) 366, 417, 1485, 1702, 1785, 2061
MbiI CCGCTC 1 cut(s) 399
MboI GATC 6 cut(s) 364, 415, 1483, 1700, 1783, 2059
MboII GAAGA 7 cut(s) 478, 1337, 1340, 1922, 2099, 2297, 2341
MfeI CAATTG 1 cut(s) 2118
MflI RGATCY 2 cut(s) 1483, 1700
MhlI GDGCHC 2 cut(s) 1092, 1363
MlyI GAGTC 3 cut(s) 446, 916, 1718
MmeI TCCRAC 6 cut(s) 165, 848, 1254, 1264, 1839, 2368
Mph1103I ATGCAT 2 cut(s) 844, 1623
MslI CAYNNNNRTG 4 cut(s) 18, 795, 1179, 1457
MspA1I CMGCKG 1 cut(s) 913
MspI CCGG 1 cut(s) 746
MspR9I CCNGG 1 cut(s) 1834
MunI CAATTG 1 cut(s) 2118
Mva1269I GAATGC 4 cut(s) 844, 937, 1240, 1866
MvaI CCWGG 1 cut(s) 1834
MwoI GCNNNNNNNGC 7 cut(s) 1193, 1244, 1253, 1410, 1870, 2076, 2195
NcoI CCATGG 2 cut(s) 1093, 2170
NdeII GATC 6 cut(s) 364, 415, 1483, 1700, 1783, 2059
NlaIV GGNNCC 1 cut(s) 1372
NmeAIII GCCGAG 1 cut(s) 2096
NmuCI GTSAC 3 cut(s) 826, 1027, 1330
NsbI TGCGCA 1 cut(s) 1660
NsiI ATGCAT 2 cut(s) 844, 1623
NspI RCATGY 5 cut(s) 1045, 1462, 2116, 2163, 2378
NspV TTCGAA 1 cut(s) 884
PaeI GCATGC 3 cut(s) 1045, 2116, 2378
PaqCI CACCTGC 1 cut(s) 814
PceI AGGCCT 1 cut(s) 443
PciI ACATGT 1 cut(s) 1458
PcsI WCGNNNNNNNCGW 2 cut(s) 542, 626
PctI GAATGC 4 cut(s) 844, 937, 1240, 1866
PfeI GAWTC 7 cut(s) 512, 1121, 1577, 1693, 1928, 2166, 2432
PflMI CCANNNNNTGG 1 cut(s) 2139
PfoI TCCNGGA 1 cut(s) 1832
PkrI GCNGC 6 cut(s) 278, 308, 401, 408, 937, 2200
Ple19I CGATCG 1 cut(s) 367
PleI GAGTC 3 cut(s) 446, 915, 1718
PpsI GAGTC 3 cut(s) 446, 915, 1718
PscI ACATGT 1 cut(s) 1458
PshBI ATTAAT 1 cut(s) 1148
Psp124BI GAGCTC 1 cut(s) 1092
Psp6I CCWGG 1 cut(s) 1832
PspGI CCWGG 1 cut(s) 1832
PspN4I GGNNCC 1 cut(s) 1372
PspPI GGNCC 1 cut(s) 1171
PstI CTGCAG 1 cut(s) 1675
PsuI RGATCY 2 cut(s) 1483, 1700
PvuI CGATCG 1 cut(s) 367
RsaI GTAC 4 cut(s) 820, 1463, 2124, 2240
RsaNI GTAC 4 cut(s) 819, 1462, 2123, 2239
RseI CAYNNNNRTG 4 cut(s) 18, 795, 1179, 1457
SacI GAGCTC 1 cut(s) 1092
SatI GCNGC 6 cut(s) 277, 307, 400, 407, 936, 2199
Sau3AI GATC 6 cut(s) 364, 415, 1483, 1700, 1783, 2059
Sau96I GGNCC 1 cut(s) 1171
SchI GAGTC 3 cut(s) 446, 916, 1718
ScrFI CCNGG 1 cut(s) 1834
SduI GDGCHC 2 cut(s) 1092, 1363
SfaNI GCATC 5 cut(s) 565, 1608, 1998, 2119, 2349
SfcI CTRYAG 1 cut(s) 1671
SfiI GGCCNNNNNGGCC 1 cut(s) 2076
SfuI TTCGAA 1 cut(s) 884
SmiMI CAYNNNNRTG 4 cut(s) 18, 795, 1179, 1457
SmlI CTYRAG 2 cut(s) 1268, 1308
SmoI CTYRAG 2 cut(s) 1268, 1308
SpeI ACTAGT 1 cut(s) 944
SphI GCATGC 3 cut(s) 1045, 2116, 2378
SseBI AGGCCT 1 cut(s) 443
SspI AATATT 2 cut(s) 1222, 2023
SspMI CTAG 4 cut(s) 503, 945, 1481, 1865
SstI GAGCTC 1 cut(s) 1092
StuI AGGCCT 1 cut(s) 443
StyD4I CCNGG 1 cut(s) 1832
StyI CCWWGG 4 cut(s) 1093, 1381, 2065, 2170
TaaI ACNGT 5 cut(s) 295, 560, 1365, 1498, 2348
TaiI ACGT 4 cut(s) 528, 666, 1131, 2262
TaqI TCGA 5 cut(s) 411, 884, 1492, 2058, 2164
TauI GCSGC 3 cut(s) 279, 309, 402
TfiI GAWTC 7 cut(s) 512, 1121, 1577, 1693, 1928, 2166, 2432
TscAI CASTG 3 cut(s) 678, 1545, 1885
TseFI GTSAC 3 cut(s) 826, 1027, 1330
TseI GCWGC 3 cut(s) 406, 935, 2198
Tsp45I GTSAC 3 cut(s) 826, 1027, 1330
TspGWI ACGGA 1 cut(s) 595
TspRI CASTG 3 cut(s) 678, 1545, 1885
Van91I CCANNNNNTGG 1 cut(s) 2139
VneI GTGCAC 1 cut(s) 1359
VspI ATTAAT 1 cut(s) 1148
XapI RAATTY 4 cut(s) 694, 1317, 1392, 2410
XceI RCATGY 5 cut(s) 1045, 1462, 2116, 2163, 2378
XcmI CCANNNNNNNNNTGG 1 cut(s) 355
XmiI GTMKAC 1 cut(s) 1105
XspI CTAG 4 cut(s) 503, 945, 1481, 1865
Zsp2I ATGCAT 2 cut(s) 844, 1623
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.