Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g20891 |
| malus_domestica | MD15G1186900.v1.1 |
| prunus_persica | Prupe.6G186500_v2.0.a1 |
| pyrus_communis | pycom15g16750 |
| rosa_chinensis | RchiOBHm_Chr2g0113511 |
| rosa_laevigata | RLG00000018071 |
| rosa_multiflora | Rmu_sc0000929.1_g000048 Rmu_sc0007415.1_g000023 |
| rosa_roxburghii | Rroxscaffold_2G00129180 Rroxscaffold_2G00129970 |
| rosa_rugosa | Rorug02G0187900 Rorug02G0188000 |
| rosa_samantha | Rh2AG242600 Rh2BG256500 Rh2CG246800 Rh2CG246900 Rh2DG250600 |
| rosa_wichuraiana | Rw2G018970 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 811 |
| Acc16I | TGCGCA | 2 cut(s) | 751, 1657 |
| Acc36I | ACCTGC | 1 cut(s) | 811 |
| AccB1I | GGYRCC | 1 cut(s) | 2264 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2136 |
| AccBSI | CCGCTC | 2 cut(s) | 396, 2246 |
| AccI | GTMKAC | 1 cut(s) | 709 |
| AclWI | GGATC | 3 cut(s) | 1423, 1705, 2392 |
| AcoI | YGGCCR | 2 cut(s) | 1771, 2065 |
| AcsI | RAATTY | 3 cut(s) | 691, 1314, 1389 |
| AcyI | GRCGYC | 3 cut(s) | 264, 878, 1184 |
| AfaI | GTAC | 3 cut(s) | 817, 1460, 2121 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 1204, 2068, 2136, 2451, 2579 |
| AflIII | ACRYGT | 1 cut(s) | 1455 |
| AgsI | TTSAA | 5 cut(s) | 253, 1058, 1118, 1895, 2436 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1522 |
| AhlI | ACTAGT | 1 cut(s) | 941 |
| AjnI | CCWGG | 1 cut(s) | 2578 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 794, 826, 2165, 2197 |
| Alw21I | GWGCWC | 1 cut(s) | 1360 |
| Alw26I | GTCTC | 5 cut(s) | 217, 1285, 1441, 1509, 2360 |
| Alw44I | GTGCAC | 1 cut(s) | 1356 |
| AlwI | GGATC | 3 cut(s) | 1423, 1705, 2392 |
| Ama87I | CYCGRG | 1 cut(s) | 2449 |
| AoxI | GGCC | 5 cut(s) | 438, 1168, 1771, 2065, 2074 |
| ApaLI | GTGCAC | 1 cut(s) | 1356 |
| ApeKI | GCWGC | 5 cut(s) | 403, 932, 2195, 2336, 2525 |
| ApoI | RAATTY | 3 cut(s) | 691, 1314, 1389 |
| AseI | ATTAAT | 2 cut(s) | 1145, 2598 |
| AspLEI | GCGC | 3 cut(s) | 224, 752, 1658 |
| AsuC2I | CCSGG | 2 cut(s) | 2069, 2378 |
| AvaI | CYCGRG | 1 cut(s) | 2449 |
| AxyI | CCTNAGG | 1 cut(s) | 2294 |
| BaeGI | GKGCMC | 2 cut(s) | 1360, 2431 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 807, 840 |
| BanI | GGYRCC | 1 cut(s) | 2264 |
| BbsI | GAAGAC | 1 cut(s) | 2405 |
| Bbv12I | GWGCWC | 1 cut(s) | 1360 |
| BbvI | GCAGC | 5 cut(s) | 415, 944, 2207, 2348, 2512 |
| BccI | CCATC | 7 cut(s) | 466, 766, 1198, 1340, 1904, 2453, 2473 |
| BciT130I | CCWGG | 1 cut(s) | 2580 |
| BciVI | GTATCC | 2 cut(s) | 973, 1844 |
| BclI | TGATCA | 1 cut(s) | 412 |
| BcnI | CCSGG | 2 cut(s) | 2069, 2378 |
| BcoDI | GTCTC | 5 cut(s) | 217, 1285, 1441, 1509, 2360 |
| BcuI | ACTAGT | 1 cut(s) | 941 |
| BfaI | CTAG | 5 cut(s) | 500, 942, 1061, 1478, 1862 |
| BfmI | CTRYAG | 1 cut(s) | 1668 |
| BfuAI | ACCTGC | 1 cut(s) | 811 |
| BfuI | GTATCC | 2 cut(s) | 973, 1844 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2073 |
| BglII | AGATCT | 2 cut(s) | 1480, 2590 |
| Bme1390I | CCNGG | 3 cut(s) | 2069, 2378, 2580 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1522 |
| BmeT110I | CYCGRG | 1 cut(s) | 2449 |
| BmiI | GGNNCC | 3 cut(s) | 1369, 2266, 2326 |
| BmrFI | CCNGG | 3 cut(s) | 2069, 2378, 2580 |
| BmrI | ACTGGG | 1 cut(s) | 711 |
| BmuI | ACTGGG | 1 cut(s) | 711 |
| BpiI | GAAGAC | 1 cut(s) | 2405 |
| Bpu10I | CCTNAGC | 1 cut(s) | 351 |
| BpuEI | CTTGAG | 1 cut(s) | 1286 |
| BpuMI | CCSGG | 2 cut(s) | 2069, 2378 |
| BsaAI | YACGTR | 1 cut(s) | 523 |
| BsaHI | GRCGYC | 3 cut(s) | 264, 878, 1184 |
| BsaI | GGTCTC | 1 cut(s) | 2360 |
| BsaJI | CCNNGG | 7 cut(s) | 1090, 1378, 2062, 2167, 2260, 2450, 2579 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 98, 128, 197, 227 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 1204, 2068, 2136, 2451, 2579 |
| Bse118I | RCCGGY | 1 cut(s) | 742 |
| Bse1I | ACTGG | 2 cut(s) | 706, 1046 |
| Bse21I | CCTNAGG | 1 cut(s) | 2294 |
| Bse3DI | GCAATG | 7 cut(s) | 25, 345, 737, 787, 1875, 1905, 1938 |
| BseBI | CCWGG | 1 cut(s) | 2580 |
| BseDI | CCNNGG | 7 cut(s) | 1090, 1378, 2062, 2167, 2260, 2450, 2579 |
| BseGI | GGATG | 9 cut(s) | 477, 520, 577, 769, 1213, 1825, 2304, 2445, 2608 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 1204, 2068, 2136, 2451, 2579 |
| BseMI | GCAATG | 7 cut(s) | 25, 345, 737, 787, 1875, 1905, 1938 |
| BseMII | CTCAG | 5 cut(s) | 40, 365, 591, 1568, 2308 |
| BseNI | ACTGG | 2 cut(s) | 706, 1046 |
| BseRI | GAGGAG | 4 cut(s) | 52, 113, 176, 2276 |
| BseSI | GKGCMC | 2 cut(s) | 1360, 2431 |
| BseXI | GCAGC | 5 cut(s) | 415, 944, 2207, 2348, 2512 |
| BsgI | GTGCAG | 1 cut(s) | 422 |
| Bsh1285I | CGRYCG | 1 cut(s) | 364 |
| BshFI | GGCC | 5 cut(s) | 440, 1170, 1773, 2067, 2076 |
| BshNI | GGYRCC | 1 cut(s) | 2264 |
| BsiEI | CGRYCG | 1 cut(s) | 364 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1360 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2449 |
| BsiSI | CCGG | 3 cut(s) | 743, 2068, 2378 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 1204, 2068, 2136, 2451, 2579 |
| BsmAI | GTCTC | 5 cut(s) | 217, 1285, 1441, 1509, 2360 |
| BsmBI | CGTCTC | 2 cut(s) | 217, 1509 |
| BsmI | GAATGC | 4 cut(s) | 841, 934, 1237, 1863 |
| BsnI | GGCC | 5 cut(s) | 440, 1170, 1773, 2067, 2076 |
| Bso31I | GGTCTC | 1 cut(s) | 2360 |
| BsoBI | CYCGRG | 1 cut(s) | 2449 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1360, 2431 |
| Bsp19I | CCATGG | 2 cut(s) | 1090, 2167 |
| BspANI | GGCC | 5 cut(s) | 440, 1170, 1773, 2067, 2076 |
| BspCNI | CTCAG | 5 cut(s) | 39, 364, 592, 1567, 2307 |
| BspLI | GGNNCC | 3 cut(s) | 1369, 2266, 2326 |
| BspMAI | CTGCAG | 1 cut(s) | 1672 |
| BspMI | ACCTGC | 1 cut(s) | 811 |
| BspPI | GGATC | 3 cut(s) | 1423, 1705, 2392 |
| BspT107I | GGYRCC | 1 cut(s) | 2264 |
| BspTNI | GGTCTC | 1 cut(s) | 2360 |
| BsrBI | CCGCTC | 2 cut(s) | 396, 2246 |
| BsrDI | GCAATG | 7 cut(s) | 25, 345, 737, 787, 1875, 1905, 1938 |
| BsrFI | RCCGGY | 1 cut(s) | 742 |
| BsrI | ACTGG | 2 cut(s) | 706, 1046 |
| BssAI | RCCGGY | 1 cut(s) | 742 |
| BssECI | CCNNGG | 7 cut(s) | 1090, 1378, 2062, 2167, 2260, 2450, 2579 |
| BssNI | GRCGYC | 3 cut(s) | 264, 878, 1184 |
| BssT1I | CCWWGG | 5 cut(s) | 1090, 1378, 2062, 2167, 2260 |
| Bst2UI | CCWGG | 1 cut(s) | 2580 |
| Bst4CI | ACNGT | 3 cut(s) | 292, 557, 1362 |
| Bst6I | CTCTTC | 1 cut(s) | 2294 |
| BstACI | GRCGYC | 3 cut(s) | 264, 878, 1184 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 758 |
| BstBAI | YACGTR | 1 cut(s) | 523 |
| BstDEI | CTNAG | 9 cut(s) | 26, 351, 566, 600, 1511, 1554, 1580, 1791, 2294 |
| BstDSI | CCRYGG | 2 cut(s) | 1090, 2167 |
| BstF5I | GGATG | 9 cut(s) | 477, 520, 577, 769, 1213, 1825, 2304, 2445, 2608 |
| BstHHI | GCGC | 3 cut(s) | 224, 752, 1658 |
| BstMAI | GTCTC | 5 cut(s) | 217, 1285, 1441, 1509, 2360 |
| BstMCI | CGRYCG | 1 cut(s) | 364 |
| BstNI | CCWGG | 1 cut(s) | 2580 |
| BstNSI | RCATGY | 5 cut(s) | 1042, 1459, 2049, 2113, 2160 |
| BstSCI | CCNGG | 3 cut(s) | 2067, 2376, 2578 |
| BstSFI | CTRYAG | 1 cut(s) | 1668 |
| BstSLI | GKGCMC | 2 cut(s) | 1360, 2431 |
| BstV1I | GCAGC | 5 cut(s) | 415, 944, 2207, 2348, 2512 |
| BstV2I | GAAGAC | 1 cut(s) | 2405 |
| BstX2I | RGATCY | 4 cut(s) | 1415, 1480, 1697, 2590 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2362 |
| BstYI | RGATCY | 4 cut(s) | 1415, 1480, 1697, 2590 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2294 |
| BsuI | GTATCC | 2 cut(s) | 973, 1844 |
| BsuRI | GGCC | 5 cut(s) | 440, 1170, 1773, 2067, 2076 |
| BtgI | CCRYGG | 2 cut(s) | 1090, 2167 |
| BtgZI | GCGATG | 1 cut(s) | 2018 |
| BtsCI | GGATG | 9 cut(s) | 477, 520, 577, 769, 1213, 1825, 2304, 2445, 2608 |
| BtsI | GCAGTG | 1 cut(s) | 668 |
| BtsIMutI | CAGTG | 2 cut(s) | 668, 1535 |
| BveI | ACCTGC | 1 cut(s) | 811 |
| CfoI | GCGC | 3 cut(s) | 224, 752, 1658 |
| Cfr10I | RCCGGY | 1 cut(s) | 742 |
| CseI | GACGC | 4 cut(s) | 199, 272, 867, 1173 |
| Csp6I | GTAC | 3 cut(s) | 816, 1459, 2120 |
| CviQI | GTAC | 3 cut(s) | 816, 1459, 2120 |
| DdeI | CTNAG | 9 cut(s) | 26, 351, 566, 600, 1511, 1554, 1580, 1791, 2294 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1522 |
| EaeI | YGGCCR | 2 cut(s) | 1771, 2065 |
| Eam1104I | CTCTTC | 1 cut(s) | 2294 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1522 |
| EarI | CTCTTC | 1 cut(s) | 2294 |
| Eco130I | CCWWGG | 5 cut(s) | 1090, 1378, 2062, 2167, 2260 |
| Eco147I | AGGCCT | 1 cut(s) | 440 |
| Eco31I | GGTCTC | 1 cut(s) | 2360 |
| Eco81I | CCTNAGG | 1 cut(s) | 2294 |
| Eco88I | CYCGRG | 1 cut(s) | 2449 |
| EcoRII | CCWGG | 1 cut(s) | 2578 |
| EcoT14I | CCWWGG | 5 cut(s) | 1090, 1378, 2062, 2167, 2260 |
| EcoT22I | ATGCAT | 4 cut(s) | 841, 1620, 2047, 2051 |
| ErhI | CCWWGG | 5 cut(s) | 1090, 1378, 2062, 2167, 2260 |
| Esp3I | CGTCTC | 2 cut(s) | 217, 1509 |
| FauI | CCCGC | 1 cut(s) | 48 |
| FbaI | TGATCA | 1 cut(s) | 412 |
| FblI | GTMKAC | 1 cut(s) | 709 |
| FokI | GGATG | 9 cut(s) | 484, 527, 584, 776, 1220, 1832, 2311, 2432, 2595 |
| FspBI | CTAG | 5 cut(s) | 500, 942, 1061, 1478, 1862 |
| FspI | TGCGCA | 2 cut(s) | 751, 1657 |
| GlaI | GCGC | 3 cut(s) | 223, 751, 1657 |
| HaeIII | GGCC | 5 cut(s) | 440, 1170, 1773, 2067, 2076 |
| HapII | CCGG | 3 cut(s) | 743, 2068, 2378 |
| HgaI | GACGC | 4 cut(s) | 199, 272, 867, 1173 |
| HhaI | GCGC | 3 cut(s) | 224, 752, 1658 |
| Hin1I | GRCGYC | 3 cut(s) | 264, 878, 1184 |
| Hin6I | GCGC | 3 cut(s) | 222, 750, 1656 |
| HinP1I | GCGC | 3 cut(s) | 222, 750, 1656 |
| HindIII | AAGCTT | 1 cut(s) | 1712 |
| HpaII | CCGG | 3 cut(s) | 743, 2068, 2378 |
| Hpy166II | GTNNAC | 4 cut(s) | 358, 520, 710, 1358 |
| Hpy188III | TCNNGA | 2 cut(s) | 2296, 2449 |
| Hpy8I | GTNNAC | 4 cut(s) | 358, 520, 710, 1358 |
| Hpy99I | CGWCG | 2 cut(s) | 266, 883 |
| HpyCH4III | ACNGT | 3 cut(s) | 292, 557, 1362 |
| HpyCH4IV | ACGT | 4 cut(s) | 522, 660, 1125, 2175 |
| HpyF3I | CTNAG | 9 cut(s) | 26, 351, 566, 600, 1511, 1554, 1580, 1791, 2294 |
| HpySE526I | ACGT | 4 cut(s) | 522, 660, 1125, 2175 |
| Hsp92I | GRCGYC | 3 cut(s) | 264, 878, 1184 |
| HspAI | GCGC | 3 cut(s) | 222, 750, 1656 |
| Ksp22I | TGATCA | 1 cut(s) | 412 |
| LmnI | GCTCC | 3 cut(s) | 347, 393, 2330 |
| Lsp1109I | GCAGC | 5 cut(s) | 415, 944, 2207, 2348, 2512 |
| MaeI | CTAG | 5 cut(s) | 500, 942, 1061, 1478, 1862 |
| MaeII | ACGT | 4 cut(s) | 522, 660, 1125, 2175 |
| MaeIII | GTNAC | 6 cut(s) | 551, 656, 823, 1024, 1041, 1327 |
| MbiI | CCGCTC | 2 cut(s) | 396, 2246 |
| MboII | GAAGA | 8 cut(s) | 475, 1334, 1337, 1919, 2096, 2281, 2405, 2572 |
| MfeI | CAATTG | 1 cut(s) | 2115 |
| MflI | RGATCY | 4 cut(s) | 1415, 1480, 1697, 2590 |
| MhlI | GDGCHC | 2 cut(s) | 1360, 2431 |
| MlyI | GAGTC | 3 cut(s) | 443, 913, 1715 |
| MmeI | TCCRAC | 5 cut(s) | 162, 845, 1251, 1261, 1836 |
| Mph1103I | ATGCAT | 4 cut(s) | 841, 1620, 2047, 2051 |
| MslI | CAYNNNNRTG | 5 cut(s) | 18, 635, 792, 1176, 1454 |
| MspA1I | CMGCKG | 3 cut(s) | 910, 2198, 2234 |
| MspI | CCGG | 3 cut(s) | 743, 2068, 2378 |
| MspR9I | CCNGG | 3 cut(s) | 2069, 2378, 2580 |
| MunI | CAATTG | 1 cut(s) | 2115 |
| Mva1269I | GAATGC | 4 cut(s) | 841, 934, 1237, 1863 |
| MvaI | CCWGG | 1 cut(s) | 2580 |
| NciI | CCSGG | 2 cut(s) | 2069, 2378 |
| NcoI | CCATGG | 2 cut(s) | 1090, 2167 |
| NlaIV | GGNNCC | 3 cut(s) | 1369, 2266, 2326 |
| NmuCI | GTSAC | 3 cut(s) | 823, 1024, 1327 |
| NsbI | TGCGCA | 2 cut(s) | 751, 1657 |
| NsiI | ATGCAT | 4 cut(s) | 841, 1620, 2047, 2051 |
| NspI | RCATGY | 5 cut(s) | 1042, 1459, 2049, 2113, 2160 |
| PaeI | GCATGC | 2 cut(s) | 2049, 2113 |
| PaqCI | CACCTGC | 1 cut(s) | 811 |
| PceI | AGGCCT | 1 cut(s) | 440 |
| PciI | ACATGT | 1 cut(s) | 1455 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 539, 623 |
| PctI | GAATGC | 4 cut(s) | 841, 934, 1237, 1863 |
| PfeI | GAWTC | 9 cut(s) | 478, 509, 1118, 1574, 1690, 1925, 2163, 2398, 2531 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2136 |
| Ple19I | CGATCG | 1 cut(s) | 364 |
| PleI | GAGTC | 3 cut(s) | 443, 912, 1715 |
| PpsI | GAGTC | 3 cut(s) | 443, 912, 1715 |
| Ppu21I | YACGTR | 1 cut(s) | 523 |
| PscI | ACATGT | 1 cut(s) | 1455 |
| PshBI | ATTAAT | 2 cut(s) | 1145, 2598 |
| Psp6I | CCWGG | 1 cut(s) | 2578 |
| PspGI | CCWGG | 1 cut(s) | 2578 |
| PspN4I | GGNNCC | 3 cut(s) | 1369, 2266, 2326 |
| PstI | CTGCAG | 1 cut(s) | 1672 |
| PsuI | RGATCY | 4 cut(s) | 1415, 1480, 1697, 2590 |
| PvuI | CGATCG | 1 cut(s) | 364 |
| PvuII | CAGCTG | 1 cut(s) | 2234 |
| RsaI | GTAC | 3 cut(s) | 817, 1460, 2121 |
| RsaNI | GTAC | 3 cut(s) | 816, 1459, 2120 |
| RseI | CAYNNNNRTG | 5 cut(s) | 18, 635, 792, 1176, 1454 |
| SchI | GAGTC | 3 cut(s) | 443, 913, 1715 |
| ScrFI | CCNGG | 3 cut(s) | 2069, 2378, 2580 |
| SduI | GDGCHC | 2 cut(s) | 1360, 2431 |
| SfcI | CTRYAG | 1 cut(s) | 1668 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 2073 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 18, 635, 792, 1176, 1454 |
| SmlI | CTYRAG | 1 cut(s) | 1265 |
| SmoI | CTYRAG | 1 cut(s) | 1265 |
| SpeI | ACTAGT | 1 cut(s) | 941 |
| SphI | GCATGC | 2 cut(s) | 2049, 2113 |
| SseBI | AGGCCT | 1 cut(s) | 440 |
| SspI | AATATT | 2 cut(s) | 1219, 2020 |
| SspMI | CTAG | 5 cut(s) | 500, 942, 1061, 1478, 1862 |
| StuI | AGGCCT | 1 cut(s) | 440 |
| StyD4I | CCNGG | 3 cut(s) | 2067, 2376, 2578 |
| StyI | CCWWGG | 5 cut(s) | 1090, 1378, 2062, 2167, 2260 |
| TaaI | ACNGT | 3 cut(s) | 292, 557, 1362 |
| TaiI | ACGT | 4 cut(s) | 525, 663, 1128, 2178 |
| TaqI | TCGA | 5 cut(s) | 408, 881, 1489, 2161, 2468 |
| TaqII | GACCGA | 1 cut(s) | 727 |
| TauI | GCSGC | 8 cut(s) | 46, 49, 276, 306, 399, 2243, 2246, 2540 |
| TfiI | GAWTC | 9 cut(s) | 478, 509, 1118, 1574, 1690, 1925, 2163, 2398, 2531 |
| TscAI | CASTG | 2 cut(s) | 675, 1542 |
| TseFI | GTSAC | 3 cut(s) | 823, 1024, 1327 |
| TseI | GCWGC | 5 cut(s) | 403, 932, 2195, 2336, 2525 |
| Tsp45I | GTSAC | 3 cut(s) | 823, 1024, 1327 |
| TspGWI | ACGGA | 1 cut(s) | 1869 |
| TspRI | CASTG | 2 cut(s) | 675, 1542 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2136 |
| VneI | GTGCAC | 1 cut(s) | 1356 |
| VspI | ATTAAT | 2 cut(s) | 1145, 2598 |
| XapI | RAATTY | 3 cut(s) | 691, 1314, 1389 |
| XceI | RCATGY | 5 cut(s) | 1042, 1459, 2049, 2113, 2160 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 352, 2377 |
| XmiI | GTMKAC | 1 cut(s) | 709 |
| XspI | CTAG | 5 cut(s) | 500, 942, 1061, 1478, 1862 |
| Zsp2I | ATGCAT | 4 cut(s) | 841, 1620, 2047, 2051 |