Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g20891 |
| malus_domestica | MD15G1186900.v1.1 |
| prunus_persica | Prupe.6G186500_v2.0.a1 |
| pyrus_communis | pycom15g16750 |
| rosa_chinensis | RchiOBHm_Chr2g0113511 |
| rosa_laevigata | RLG00000018071 |
| rosa_multiflora | Rmu_sc0000929.1_g000048 Rmu_sc0007415.1_g000023 |
| rosa_roxburghii | Rroxscaffold_2G00129180 Rroxscaffold_2G00129970 |
| rosa_rugosa | Rorug02G0187900 Rorug02G0188000 |
| rosa_samantha | Rh2AG242600 Rh2BG256500 Rh2CG246800 Rh2CG246900 Rh2DG250600 |
| rosa_wichuraiana | Rw2G018970 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1563 |
| Acc16I | TGCGCA | 1 cut(s) | 1690 |
| AccB1I | GGYRCC | 1 cut(s) | 2174 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1237, 2169 |
| AccBSI | CCGCTC | 1 cut(s) | 802 |
| AciI | CCGC | 6 cut(s) | 47, 429, 802, 1441, 1803, 1837 |
| AclWI | GGATC | 3 cut(s) | 805, 855, 2462 |
| AcoI | YGGCCR | 2 cut(s) | 1504, 2098 |
| AcsI | RAATTY | 4 cut(s) | 724, 1347, 1615, 2440 |
| AfaI | GTAC | 4 cut(s) | 887, 1493, 2154, 2270 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 366, 367, 1237, 2169 |
| AflIII | ACRYGT | 3 cut(s) | 1385, 1488, 2289 |
| AgsI | TTSAA | 9 cut(s) | 286, 915, 1004, 1091, 1151, 1209, 1928, 2251, 2286 |
| AhlI | ACTAGT | 1 cut(s) | 974 |
| AjnI | CCWGG | 2 cut(s) | 1259, 2397 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 674, 706, 827, 859, 2198, 2230 |
| AluBI | AGCT | 8 cut(s) | 168, 1636, 1685, 1747, 1903, 2105, 2131, 2303 |
| AluI | AGCT | 8 cut(s) | 168, 1636, 1685, 1747, 1903, 2105, 2131, 2303 |
| Alw21I | GWGCWC | 2 cut(s) | 122, 1393 |
| Alw26I | GTCTC | 7 cut(s) | 250, 652, 983, 1318, 1474, 1614, 2426 |
| Alw44I | GTGCAC | 1 cut(s) | 118 |
| AlwI | GGATC | 3 cut(s) | 805, 855, 2462 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2047, 2303 |
| AoxI | GGCC | 4 cut(s) | 1201, 1504, 2098, 2107 |
| ApaLI | GTGCAC | 1 cut(s) | 118 |
| ApeKI | GCWGC | 3 cut(s) | 965, 1820, 2228 |
| ApoI | RAATTY | 4 cut(s) | 724, 1347, 1615, 2440 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1321, 1353 |
| AspLEI | GCGC | 2 cut(s) | 257, 1691 |
| AspS9I | GGNCC | 1 cut(s) | 2395 |
| AsuC2I | CCSGG | 1 cut(s) | 293 |
| AsuHPI | GGTGA | 8 cut(s) | 123, 179, 296, 941, 1354, 1355, 1910, 2341 |
| AsuII | TTCGAA | 2 cut(s) | 315, 424 |
| AvaII | GGWCC | 1 cut(s) | 2395 |
| AxyI | CCTNAGG | 1 cut(s) | 1544 |
| BaeGI | GKGCMC | 1 cut(s) | 122 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1067, 1100 |
| BanI | GGYRCC | 1 cut(s) | 2174 |
| BbsI | GAAGAC | 3 cut(s) | 1123, 1153, 1947 |
| Bbv12I | GWGCWC | 2 cut(s) | 122, 1393 |
| BbvI | GCAGC | 3 cut(s) | 952, 1807, 2240 |
| BccI | CCATC | 7 cut(s) | 18, 315, 499, 799, 1017, 1231, 2304 |
| BceAI | ACGGC | 1 cut(s) | 1188 |
| BciT130I | CCWGG | 2 cut(s) | 1261, 2399 |
| BclI | TGATCA | 1 cut(s) | 445 |
| BcnI | CCSGG | 1 cut(s) | 293 |
| BcoDI | GTCTC | 7 cut(s) | 250, 652, 983, 1318, 1474, 1614, 2426 |
| BcuI | ACTAGT | 1 cut(s) | 974 |
| BfaI | CTAG | 5 cut(s) | 975, 1068, 1511, 1895, 2220 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2106 |
| BglII | AGATCT | 2 cut(s) | 87, 1513 |
| BisI | GCNGC | 3 cut(s) | 966, 1821, 2229 |
| BlsI | GCNGC | 3 cut(s) | 967, 1822, 2230 |
| Bme1390I | CCNGG | 3 cut(s) | 293, 1261, 2399 |
| Bme18I | GGWCC | 1 cut(s) | 2395 |
| BmgT120I | GGNCC | 1 cut(s) | 2395 |
| BmiI | GGNNCC | 3 cut(s) | 45, 1402, 2176 |
| BmrFI | CCNGG | 3 cut(s) | 293, 1261, 2399 |
| BmsI | GCATC | 3 cut(s) | 595, 1226, 2149 |
| BpiI | GAAGAC | 3 cut(s) | 1123, 1153, 1947 |
| BpmI | CTGGAG | 1 cut(s) | 2450 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1824, 2256 |
| Bpu14I | TTCGAA | 2 cut(s) | 315, 424 |
| BpuEI | CTTGAG | 2 cut(s) | 369, 1319 |
| BpuMI | CCSGG | 1 cut(s) | 293 |
| BsaBI | GATNNNNATC | 1 cut(s) | 809 |
| BsaJI | CCNNGG | 5 cut(s) | 1008, 1123, 1996, 2095, 2200 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1992, 2022 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 366, 367, 1237, 2169 |
| Bse118I | RCCGGY | 2 cut(s) | 775, 1506 |
| Bse1I | ACTGG | 2 cut(s) | 868, 1079 |
| Bse21I | CCTNAGG | 1 cut(s) | 1544 |
| Bse3DI | GCAATG | 4 cut(s) | 378, 820, 1164, 1938 |
| Bse8I | GATNNNNATC | 1 cut(s) | 809 |
| BseBI | CCWGG | 2 cut(s) | 1261, 2399 |
| BseDI | CCNNGG | 5 cut(s) | 1008, 1123, 1996, 2095, 2200 |
| BseGI | GGATG | 9 cut(s) | 510, 646, 810, 1032, 1162, 1217, 1555, 1858, 2320 |
| BseJI | GATNNNNATC | 1 cut(s) | 809 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 366, 367, 1237, 2169 |
| BseMI | GCAATG | 4 cut(s) | 378, 820, 1164, 1938 |
| BseMII | CTCAG | 4 cut(s) | 178, 283, 1558, 2247 |
| BseNI | ACTGG | 2 cut(s) | 868, 1079 |
| BseRI | GAGGAG | 3 cut(s) | 146, 209, 2367 |
| BseSI | GKGCMC | 1 cut(s) | 122 |
| BseXI | GCAGC | 3 cut(s) | 952, 1807, 2240 |
| BseYI | CCCAGC | 1 cut(s) | 2303 |
| BsgI | GTGCAG | 2 cut(s) | 716, 804 |
| BshFI | GGCC | 4 cut(s) | 1203, 1506, 2100, 2109 |
| BshNI | GGYRCC | 1 cut(s) | 2174 |
| BsiHKAI | GWGCWC | 2 cut(s) | 122, 1393 |
| BsiSI | CCGG | 3 cut(s) | 293, 776, 1507 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 366, 367, 1237, 2169 |
| BsmAI | GTCTC | 7 cut(s) | 250, 652, 983, 1318, 1474, 1614, 2426 |
| BsmI | GAATGC | 6 cut(s) | 907, 967, 1270, 1839, 1896, 2043 |
| BsnI | GGCC | 4 cut(s) | 1203, 1506, 2100, 2109 |
| Bsp119I | TTCGAA | 2 cut(s) | 315, 424 |
| Bsp1286I | GDGCHC | 2 cut(s) | 122, 1393 |
| Bsp143I | GATC | 8 cut(s) | 87, 445, 810, 847, 1513, 1813, 2089, 2454 |
| Bsp19I | CCATGG | 3 cut(s) | 1123, 1996, 2200 |
| BspACI | CCGC | 6 cut(s) | 47, 429, 802, 1441, 1803, 1837 |
| BspANI | GGCC | 4 cut(s) | 1203, 1506, 2100, 2109 |
| BspCNI | CTCAG | 4 cut(s) | 177, 282, 1557, 2248 |
| BspHI | TCATGA | 1 cut(s) | 1651 |
| BspLI | GGNNCC | 3 cut(s) | 45, 1402, 2176 |
| BspPI | GGATC | 3 cut(s) | 805, 855, 2462 |
| BspT104I | TTCGAA | 2 cut(s) | 315, 424 |
| BspT107I | GGYRCC | 1 cut(s) | 2174 |
| BsrBI | CCGCTC | 1 cut(s) | 802 |
| BsrDI | GCAATG | 4 cut(s) | 378, 820, 1164, 1938 |
| BsrFI | RCCGGY | 2 cut(s) | 775, 1506 |
| BsrI | ACTGG | 2 cut(s) | 868, 1079 |
| BssAI | RCCGGY | 2 cut(s) | 775, 1506 |
| BssECI | CCNNGG | 5 cut(s) | 1008, 1123, 1996, 2095, 2200 |
| BssMI | GATC | 8 cut(s) | 87, 445, 810, 847, 1513, 1813, 2089, 2454 |
| BssT1I | CCWWGG | 5 cut(s) | 1008, 1123, 1996, 2095, 2200 |
| Bst2UI | CCWGG | 2 cut(s) | 1261, 2399 |
| Bst4CI | ACNGT | 6 cut(s) | 242, 325, 661, 1438, 1946, 2369 |
| Bst6I | CTCTTC | 1 cut(s) | 317 |
| BstBI | TTCGAA | 2 cut(s) | 315, 424 |
| BstDEI | CTNAG | 7 cut(s) | 26, 164, 269, 1544, 1603, 1824, 2256 |
| BstDSI | CCRYGG | 3 cut(s) | 1123, 1996, 2200 |
| BstF5I | GGATG | 9 cut(s) | 510, 646, 810, 1032, 1162, 1217, 1555, 1858, 2320 |
| BstHHI | GCGC | 2 cut(s) | 257, 1691 |
| BstKTI | GATC | 8 cut(s) | 90, 448, 813, 850, 1516, 1816, 2092, 2457 |
| BstMAI | GTCTC | 7 cut(s) | 250, 652, 983, 1318, 1474, 1614, 2426 |
| BstMBI | GATC | 8 cut(s) | 87, 445, 810, 847, 1513, 1813, 2089, 2454 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 1274, 1845, 1900, 2106, 2225 |
| BstNI | CCWGG | 2 cut(s) | 1261, 2399 |
| BstNSI | RCATGY | 7 cut(s) | 128, 1447, 1492, 2146, 2193, 2293, 2408 |
| BstSCI | CCNGG | 3 cut(s) | 291, 1259, 2397 |
| BstSLI | GKGCMC | 1 cut(s) | 122 |
| BstV1I | GCAGC | 3 cut(s) | 952, 1807, 2240 |
| BstV2I | GAAGAC | 3 cut(s) | 1123, 1153, 1947 |
| BstX2I | RGATCY | 3 cut(s) | 87, 847, 1513 |
| BstYI | RGATCY | 3 cut(s) | 87, 847, 1513 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1544 |
| BsuRI | GGCC | 4 cut(s) | 1203, 1506, 2100, 2109 |
| BtgI | CCRYGG | 3 cut(s) | 1123, 1996, 2200 |
| BtsCI | GGATG | 9 cut(s) | 510, 646, 810, 1032, 1162, 1217, 1555, 1858, 2320 |
| BtsI | GCAGTG | 2 cut(s) | 339, 1908 |
| BtsIMutI | CAGTG | 5 cut(s) | 247, 339, 1086, 1908, 2045 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2047, 2303 |
| CciI | TCATGA | 1 cut(s) | 1651 |
| CfoI | GCGC | 2 cut(s) | 257, 1691 |
| Cfr10I | RCCGGY | 2 cut(s) | 775, 1506 |
| Cfr13I | GGNCC | 1 cut(s) | 2395 |
| CsiI | ACCWGGT | 1 cut(s) | 2397 |
| Csp6I | GTAC | 4 cut(s) | 886, 1492, 2153, 2269 |
| CviQI | GTAC | 4 cut(s) | 886, 1492, 2153, 2269 |
| DdeI | CTNAG | 7 cut(s) | 26, 164, 269, 1544, 1603, 1824, 2256 |
| DpnI | GATC | 8 cut(s) | 89, 447, 812, 849, 1515, 1815, 2091, 2456 |
| DpnII | GATC | 8 cut(s) | 87, 445, 810, 847, 1513, 1813, 2089, 2454 |
| DraI | TTTAAA | 1 cut(s) | 529 |
| EaeI | YGGCCR | 2 cut(s) | 1504, 2098 |
| Eam1104I | CTCTTC | 1 cut(s) | 317 |
| EarI | CTCTTC | 1 cut(s) | 317 |
| Eco130I | CCWWGG | 5 cut(s) | 1008, 1123, 1996, 2095, 2200 |
| Eco47I | GGWCC | 1 cut(s) | 2395 |
| Eco81I | CCTNAGG | 1 cut(s) | 1544 |
| EcoRII | CCWGG | 2 cut(s) | 1259, 2397 |
| EcoT14I | CCWWGG | 5 cut(s) | 1008, 1123, 1996, 2095, 2200 |
| EcoT22I | ATGCAT | 1 cut(s) | 874 |
| ErhI | CCWWGG | 5 cut(s) | 1008, 1123, 1996, 2095, 2200 |
| FbaI | TGATCA | 1 cut(s) | 445 |
| Fnu4HI | GCNGC | 3 cut(s) | 966, 1821, 2229 |
| FokI | GGATG | 9 cut(s) | 517, 653, 817, 1039, 1169, 1204, 1562, 1865, 2327 |
| Fsp4HI | GCNGC | 3 cut(s) | 966, 1821, 2229 |
| FspBI | CTAG | 5 cut(s) | 975, 1068, 1511, 1895, 2220 |
| FspI | TGCGCA | 1 cut(s) | 1690 |
| GlaI | GCGC | 2 cut(s) | 256, 1690 |
| GluI | GCNGC | 3 cut(s) | 966, 1821, 2229 |
| GsaI | CCCAGC | 1 cut(s) | 2307 |
| GsuI | CTGGAG | 1 cut(s) | 2450 |
| HaeIII | GGCC | 4 cut(s) | 1203, 1506, 2100, 2109 |
| HapII | CCGG | 3 cut(s) | 293, 776, 1507 |
| HhaI | GCGC | 2 cut(s) | 257, 1691 |
| Hin6I | GCGC | 2 cut(s) | 255, 1689 |
| HinP1I | GCGC | 2 cut(s) | 255, 1689 |
| HindIII | AAGCTT | 2 cut(s) | 1634, 1745 |
| HpaII | CCGG | 3 cut(s) | 293, 776, 1507 |
| HphI | GGTGA | 8 cut(s) | 123, 179, 296, 941, 1354, 1355, 1910, 2341 |
| Hpy166II | GTNNAC | 5 cut(s) | 120, 230, 675, 886, 2323 |
| Hpy188III | TCNNGA | 5 cut(s) | 814, 1652, 2349, 2393, 2429 |
| Hpy8I | GTNNAC | 5 cut(s) | 120, 230, 675, 886, 2323 |
| HpyAV | CCTTC | 6 cut(s) | 194, 829, 1031, 1375, 1415, 2008 |
| HpyCH4III | ACNGT | 6 cut(s) | 242, 325, 661, 1438, 1946, 2369 |
| HpyCH4IV | ACGT | 3 cut(s) | 492, 1385, 2208 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 1274, 1845, 1900, 2106, 2225 |
| HpyF3I | CTNAG | 7 cut(s) | 26, 164, 269, 1544, 1603, 1824, 2256 |
| HpySE526I | ACGT | 3 cut(s) | 492, 1385, 2208 |
| HspAI | GCGC | 2 cut(s) | 255, 1689 |
| KroI | GCCGGC | 1 cut(s) | 1506 |
| KroNI | GCCGGC | 1 cut(s) | 1508 |
| Ksp22I | TGATCA | 1 cut(s) | 445 |
| Kzo9I | GATC | 8 cut(s) | 87, 445, 810, 847, 1513, 1813, 2089, 2454 |
| LmnI | GCTCC | 2 cut(s) | 173, 2186 |
| Lsp1109I | GCAGC | 3 cut(s) | 952, 1807, 2240 |
| LweI | GCATC | 3 cut(s) | 595, 1226, 2149 |
| MabI | ACCWGGT | 1 cut(s) | 2397 |
| MaeI | CTAG | 5 cut(s) | 975, 1068, 1511, 1895, 2220 |
| MaeII | ACGT | 3 cut(s) | 492, 1385, 2208 |
| MaeIII | GTNAC | 5 cut(s) | 272, 856, 1057, 1360, 1696 |
| MalI | GATC | 8 cut(s) | 89, 447, 812, 849, 1515, 1815, 2091, 2456 |
| MbiI | CCGCTC | 1 cut(s) | 802 |
| MboI | GATC | 8 cut(s) | 87, 445, 810, 847, 1513, 1813, 2089, 2454 |
| MflI | RGATCY | 3 cut(s) | 87, 847, 1513 |
| MhlI | GDGCHC | 2 cut(s) | 122, 1393 |
| MlyI | GAGTC | 4 cut(s) | 432, 1113, 1616, 2434 |
| MmeI | TCCRAC | 7 cut(s) | 415, 538, 771, 1284, 1406, 2398, 2432 |
| Mph1103I | ATGCAT | 1 cut(s) | 874 |
| MroNI | GCCGGC | 1 cut(s) | 1506 |
| MslI | CAYNNNNRTG | 3 cut(s) | 767, 825, 1021 |
| MspI | CCGG | 3 cut(s) | 293, 776, 1507 |
| MspR9I | CCNGG | 3 cut(s) | 293, 1261, 2399 |
| Mva1269I | GAATGC | 6 cut(s) | 907, 967, 1270, 1839, 1896, 2043 |
| MvaI | CCWGG | 2 cut(s) | 1261, 2399 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 1274, 1845, 1900, 2106, 2225 |
| NaeI | GCCGGC | 1 cut(s) | 1508 |
| NciI | CCSGG | 1 cut(s) | 293 |
| NcoI | CCATGG | 3 cut(s) | 1123, 1996, 2200 |
| NdeII | GATC | 8 cut(s) | 87, 445, 810, 847, 1513, 1813, 2089, 2454 |
| NgoMIV | GCCGGC | 1 cut(s) | 1506 |
| NlaIV | GGNNCC | 3 cut(s) | 45, 1402, 2176 |
| NmeAIII | GCCGAG | 1 cut(s) | 2126 |
| NmuCI | GTSAC | 3 cut(s) | 856, 1057, 1360 |
| NsbI | TGCGCA | 1 cut(s) | 1690 |
| NsiI | ATGCAT | 1 cut(s) | 874 |
| NspI | RCATGY | 7 cut(s) | 128, 1447, 1492, 2146, 2193, 2293, 2408 |
| NspV | TTCGAA | 2 cut(s) | 315, 424 |
| PaeI | GCATGC | 4 cut(s) | 1447, 2146, 2193, 2408 |
| PagI | TCATGA | 1 cut(s) | 1651 |
| PciI | ACATGT | 2 cut(s) | 1488, 2289 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 421 |
| PctI | GAATGC | 6 cut(s) | 907, 967, 1270, 1839, 1896, 2043 |
| PdiI | GCCGGC | 1 cut(s) | 1508 |
| PfeI | GAWTC | 8 cut(s) | 511, 817, 1151, 1648, 1723, 1958, 2196, 2462 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1237, 2169 |
| PfoI | TCCNGGA | 1 cut(s) | 1259 |
| PkrI | GCNGC | 3 cut(s) | 967, 1822, 2230 |
| PleI | GAGTC | 4 cut(s) | 432, 1113, 1615, 2433 |
| PpsI | GAGTC | 4 cut(s) | 432, 1113, 1615, 2433 |
| PscI | ACATGT | 2 cut(s) | 1488, 2289 |
| PsiI | TTATAA | 1 cut(s) | 1563 |
| Psp6I | CCWGG | 2 cut(s) | 1259, 2397 |
| PspFI | CCCAGC | 1 cut(s) | 2303 |
| PspGI | CCWGG | 2 cut(s) | 1259, 2397 |
| PspN4I | GGNNCC | 3 cut(s) | 45, 1402, 2176 |
| PspPI | GGNCC | 1 cut(s) | 2395 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2047, 2303 |
| PsuI | RGATCY | 3 cut(s) | 87, 847, 1513 |
| RsaI | GTAC | 4 cut(s) | 887, 1493, 2154, 2270 |
| RsaNI | GTAC | 4 cut(s) | 886, 1492, 2153, 2269 |
| RseI | CAYNNNNRTG | 3 cut(s) | 767, 825, 1021 |
| SatI | GCNGC | 3 cut(s) | 966, 1821, 2229 |
| Sau3AI | GATC | 8 cut(s) | 87, 445, 810, 847, 1513, 1813, 2089, 2454 |
| Sau96I | GGNCC | 1 cut(s) | 2395 |
| SchI | GAGTC | 4 cut(s) | 432, 1113, 1616, 2434 |
| ScrFI | CCNGG | 3 cut(s) | 293, 1261, 2399 |
| SduI | GDGCHC | 2 cut(s) | 122, 1393 |
| SexAI | ACCWGGT | 1 cut(s) | 2397 |
| SfaNI | GCATC | 3 cut(s) | 595, 1226, 2149 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 2106 |
| SfuI | TTCGAA | 2 cut(s) | 315, 424 |
| SinI | GGWCC | 1 cut(s) | 2395 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 767, 825, 1021 |
| SmlI | CTYRAG | 2 cut(s) | 384, 1298 |
| SmoI | CTYRAG | 2 cut(s) | 384, 1298 |
| SpeI | ACTAGT | 1 cut(s) | 974 |
| SphI | GCATGC | 4 cut(s) | 1447, 2146, 2193, 2408 |
| SsiI | CCGC | 6 cut(s) | 47, 429, 802, 1441, 1803, 1837 |
| SspI | AATATT | 3 cut(s) | 1252, 2027, 2167 |
| SspMI | CTAG | 5 cut(s) | 975, 1068, 1511, 1895, 2220 |
| StyD4I | CCNGG | 3 cut(s) | 291, 1259, 2397 |
| StyI | CCWWGG | 5 cut(s) | 1008, 1123, 1996, 2095, 2200 |
| TaaI | ACNGT | 6 cut(s) | 242, 325, 661, 1438, 1946, 2369 |
| TaiI | ACGT | 3 cut(s) | 495, 1388, 2211 |
| TaqI | TCGA | 4 cut(s) | 315, 415, 424, 441 |
| TfiI | GAWTC | 8 cut(s) | 511, 817, 1151, 1648, 1723, 1958, 2196, 2462 |
| TscAI | CASTG | 5 cut(s) | 247, 346, 1086, 1915, 2052 |
| TseFI | GTSAC | 3 cut(s) | 856, 1057, 1360 |
| TseI | GCWGC | 3 cut(s) | 965, 1820, 2228 |
| Tsp45I | GTSAC | 3 cut(s) | 856, 1057, 1360 |
| TspGWI | ACGGA | 1 cut(s) | 1610 |
| TspRI | CASTG | 5 cut(s) | 247, 346, 1086, 1915, 2052 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1237, 2169 |
| VneI | GTGCAC | 1 cut(s) | 118 |
| VpaK11BI | GGWCC | 1 cut(s) | 2395 |
| XapI | RAATTY | 4 cut(s) | 724, 1347, 1615, 2440 |
| XceI | RCATGY | 7 cut(s) | 128, 1447, 1492, 2146, 2193, 2293, 2408 |
| XspI | CTAG | 5 cut(s) | 975, 1068, 1511, 1895, 2220 |
| Zsp2I | ATGCAT | 1 cut(s) | 874 |