Rmu_sc0007415.1_g000023

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007415.1
OG0013595
Physical Location & Seq
Forward (+)
135706 .. 138141
2436 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007415.1_g000023.1.cds

Sequence Viewer

Length: 2436 bp
atgttaaaccaccaccgcaatgtcctcagacacttccacccgccgccgctgttctcaatctcctccctctctctttccaccaccaccacaaaaccaaccccaactcaccctcactccaatctcctcacactcacctccaacgcccaaaccctccaccaaaccaagcaactccacgctctctctctcctccacgccctactcccccacagcgtctccctctgcgcctccctcatgctctcctacgccaccttcaactcccccgacgactctctccgcctctttaatcaaaccgttaagtattgccggaccgctttcttgtggaacacgctcataagagcctgctccattgctcaggtggacgatcggtttcgcacttacaatcaaatggttcggagcggcgtgcagctcgatgatcacagctttcctttcgtcatcaaggcctgttcggactctacggaggtgaagaaggggatggaggttcatggggtggtggttaaactagggtttgattcggatgtttacgtggggaacacgcttctttcgttttatggcaactgtgggaaactaagggatgcacggaaggtgtttgatgaaatgactgagagagatgttgtgtcgtggaatacgattattggggtgttttcagtgaatggtggttacattgaggcactgcattgttatagggagatgaatttgggaattgggtgtaggccgaatgttgtgagtgttattagtgcgttgccggtttgcacagagcttgcggatgagctgatggcggttcagatacattgctatgttgtgaagtctggtttgggtacgcaggtgactattgggaatgcattggttgatgtgtatgggaagtgttggaatgtgaaggcgtcgaaacaggtttttgatgagatgagtcagcggaatgaggtttcttggaatgcagctattactagtctttcttatgtggggaataatgtagaagcattggatacatttaggttgatgattgatgtaggggttaaaccaaactctgtcaccatttccagcatgttaccagttttggttgaactagaattatttggggctgggaaagaactccatggtttctgtataagaatgggtattgaatcagacgtttttattgccaactcattaattgatatgtatgcaaaatcaggccattcacatgaggcgtccaatgtgttccgagagatggatgaaaggaatattgtttcttggaatgccatgattgctaattttgctcaaaacaggcttgagttggaagcaattggacttgtgagacaaatgcaagctcatggtgaaattcccaattctgtcaccatcacaaatcttcttccagcttgtgcacggctgggttcccttcgccttgggaaagaaattcatgcaaggacaattcgcatggcatctgcctctgatttgtttgtctctaatgctctcacagatatgtatgcaaaatgtggctggctagatcttgctcgaaatgtctttaacatatcccttagagacgaggtgtcctacaacacactgataataggttattctcagaccatagattgctctgaatctctaagtttgttttctgaaatgaagctggtgggcatgatgcatgacattgtttcatttgtgggggttatatcagcttgtgcaagtctaactgcaatcaagcaaggcaaagagattcatggatctgtaataagaaagctttttgactctcatctctttgttgcaaactcacttctggatttctatactaaatctggccgaattgatcttgctactaaggtctttgaccgcatttccaacaaggatgtagcctcttggaatactatgattttgggatatggaatgctaggtgagcttgacactgcaatcagtttctttgaagcaatgagggaagatggtgtagaatatgattctgtttcatacattgcagttttgtcatcttgtagtcatggggggttagttgagaagggcaaaagatactttgacgggatgctggcacaaaatattgagcctacacaaaagcactatgcgtgcatggttgatctccttggccgagctggcctcatggaagaagcagtagaacttattaaaggcatgccaattgtaccagatgccaacatttggggttctttacttggatcatgccgaatccatgggaacatagagttggcgagttgggcagcagagtatctatttaagttaaatcctgaccatagtgggtactatatactgctttctaacatgtatgcagaagcaggtagatgggaagatgtaaagagggtgagggaattgatgaagtcaaggggattgaagaaaaatcctgcttacagttgggttcagattcgagacgaggtgcatgctttcggagttggagagagactggagagactgaattcagattgctggctggcagaatcctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

811

Amino Acids

90.22

Weight (kDa)

6.2

Isoelectric Point (pI)

34.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013595)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20891
malus_domestica MD15G1186900.v1.1
prunus_persica Prupe.6G186500_v2.0.a1
pyrus_communis pycom15g16750
rosa_chinensis RchiOBHm_Chr2g0113511
rosa_laevigata RLG00000018071
rosa_multiflora Rmu_sc0000929.1_g000048 Rmu_sc0007415.1_g000023
rosa_roxburghii Rroxscaffold_2G00129180 Rroxscaffold_2G00129970
rosa_rugosa Rorug02G0187900 Rorug02G0188000
rosa_samantha Rh2AG242600 Rh2BG256500 Rh2CG246800 Rh2CG246900 Rh2DG250600
rosa_wichuraiana Rw2G018970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 811
Acc36I ACCTGC 2 cut(s) 811, 2261
AccB7I CCANNNNNTGG 1 cut(s) 2136
AccBSI CCGCTC 1 cut(s) 396
AclWI GGATC 2 cut(s) 1705, 2161
AcoI YGGCCR 2 cut(s) 1771, 2065
AcsI RAATTY 4 cut(s) 691, 1314, 1389, 2407
AcyI GRCGYC 2 cut(s) 878, 1184
AfaI GTAC 3 cut(s) 817, 2121, 2237
AfiI CCNNNNNNNGG 2 cut(s) 1204, 2136
AflIII ACRYGT 1 cut(s) 2256
AgsI TTSAA 5 cut(s) 253, 1058, 1118, 1895, 2326
AhdI GACNNNNNGTC 1 cut(s) 1522
AhlI ACTAGT 1 cut(s) 941
AjuI GAANNNNNNNTTGG 4 cut(s) 794, 826, 2165, 2197
Alw21I GWGCWC 1 cut(s) 1360
Alw26I GTCTC 7 cut(s) 217, 1285, 1441, 1509, 2355, 2386, 2395
Alw44I GTGCAC 1 cut(s) 1356
AlwI GGATC 2 cut(s) 1705, 2161
AoxI GGCC 6 cut(s) 438, 710, 1168, 1771, 2065, 2074
ApaLI GTGCAC 1 cut(s) 1356
ApeKI GCWGC 3 cut(s) 403, 932, 2195
ApoI RAATTY 4 cut(s) 691, 1314, 1389, 2407
AseI ATTAAT 1 cut(s) 1145
AspLEI GCGC 1 cut(s) 224
AspS9I GGNCC 1 cut(s) 306
AsuHPI GGTGA 9 cut(s) 98, 124, 472, 835, 1018, 1321, 1322, 1877, 2308
AvaII GGWCC 1 cut(s) 306
BaeGI GKGCMC 1 cut(s) 1360
BaeI ACNNNNGTAYC 2 cut(s) 807, 840
Bbv12I GWGCWC 1 cut(s) 1360
BbvI GCAGC 3 cut(s) 415, 944, 2207
BccI CCATC 6 cut(s) 466, 766, 1198, 1340, 1904, 2271
BceAI ACGGC 1 cut(s) 1376
BcgI CGANNNNNNTGC 2 cut(s) 2354, 2388
BciVI GTATCC 1 cut(s) 973
BclI TGATCA 1 cut(s) 412
BcoDI GTCTC 7 cut(s) 217, 1285, 1441, 1509, 2355, 2386, 2395
BcuI ACTAGT 1 cut(s) 941
BfaI CTAG 5 cut(s) 500, 942, 1061, 1478, 1862
BfuAI ACCTGC 2 cut(s) 811, 2261
BfuI GTATCC 1 cut(s) 973
BglI GCCNNNNNGGC 1 cut(s) 2073
BglII AGATCT 1 cut(s) 1480
BisI GCNGC 6 cut(s) 44, 47, 397, 404, 933, 2196
BlsI GCNGC 6 cut(s) 45, 48, 398, 405, 934, 2197
Bme18I GGWCC 1 cut(s) 306
BmeRI GACNNNNNGTC 1 cut(s) 1522
BmgT120I GGNCC 1 cut(s) 306
BmiI GGNNCC 1 cut(s) 1369
BmsI GCATC 5 cut(s) 562, 1424, 1605, 1995, 2116
BplI GAGNNNNNCTC 2 cut(s) 2061, 2093
BpmI CTGGAG 1 cut(s) 2417
Bpu10I CCTNAGC 1 cut(s) 351
BpuEI CTTGAG 1 cut(s) 1286
BsaAI YACGTR 1 cut(s) 523
BsaHI GRCGYC 2 cut(s) 878, 1184
BsaJI CCNNGG 4 cut(s) 1090, 1378, 2062, 2167
BsaXI ACNNNNNCTCC 4 cut(s) 98, 128, 197, 227
Bsc4I CCNNNNNNNGG 2 cut(s) 1204, 2136
Bse118I RCCGGY 1 cut(s) 742
Bse1I ACTGG 2 cut(s) 1046, 2400
Bse3DI GCAATG 5 cut(s) 25, 345, 787, 1905, 1938
BseDI CCNNGG 4 cut(s) 1090, 1378, 2062, 2167
BseGI GGATG 7 cut(s) 477, 520, 577, 769, 1213, 1825, 2010
BseLI CCNNNNNNNGG 2 cut(s) 1204, 2136
BseMI GCAATG 5 cut(s) 25, 345, 787, 1905, 1938
BseMII CTCAG 4 cut(s) 40, 365, 591, 1568
BseNI ACTGG 2 cut(s) 1046, 2400
BseRI GAGGAG 3 cut(s) 52, 113, 176
BseSI GKGCMC 1 cut(s) 1360
BseXI GCAGC 3 cut(s) 415, 944, 2207
BseYI CCCAGC 2 cut(s) 1076, 1363
BsgI GTGCAG 1 cut(s) 422
Bsh1285I CGRYCG 1 cut(s) 364
BshFI GGCC 6 cut(s) 440, 712, 1170, 1773, 2067, 2076
BsiEI CGRYCG 1 cut(s) 364
BsiHKAI GWGCWC 1 cut(s) 1360
BsiSI CCGG 2 cut(s) 304, 743
BslI CCNNNNNNNGG 2 cut(s) 1204, 2136
BsmAI GTCTC 7 cut(s) 217, 1285, 1441, 1509, 2355, 2386, 2395
BsmBI CGTCTC 3 cut(s) 217, 1509, 2355
BsmI GAATGC 4 cut(s) 841, 934, 1237, 1863
BsnI GGCC 6 cut(s) 440, 712, 1170, 1773, 2067, 2076
Bsp1286I GDGCHC 1 cut(s) 1360
Bsp143I GATC 7 cut(s) 361, 412, 1480, 1697, 1780, 2056, 2153
Bsp19I CCATGG 2 cut(s) 1090, 2167
BspANI GGCC 6 cut(s) 440, 712, 1170, 1773, 2067, 2076
BspCNI CTCAG 4 cut(s) 39, 364, 592, 1567
BspLI GGNNCC 1 cut(s) 1369
BspMI ACCTGC 2 cut(s) 811, 2261
BspPI GGATC 2 cut(s) 1705, 2161
BsrBI CCGCTC 1 cut(s) 396
BsrDI GCAATG 5 cut(s) 25, 345, 787, 1905, 1938
BsrFI RCCGGY 1 cut(s) 742
BsrI ACTGG 2 cut(s) 1046, 2400
BssAI RCCGGY 1 cut(s) 742
BssECI CCNNGG 4 cut(s) 1090, 1378, 2062, 2167
BssMI GATC 7 cut(s) 361, 412, 1480, 1697, 1780, 2056, 2153
BssNI GRCGYC 2 cut(s) 878, 1184
BssT1I CCWWGG 4 cut(s) 1090, 1378, 2062, 2167
Bst4CI ACNGT 3 cut(s) 292, 557, 2345
BstACI GRCGYC 2 cut(s) 878, 1184
BstBAI YACGTR 1 cut(s) 523
BstDEI CTNAG 8 cut(s) 26, 351, 566, 600, 1511, 1554, 1580, 1791
BstDSI CCRYGG 2 cut(s) 1090, 2167
BstF5I GGATG 7 cut(s) 477, 520, 577, 769, 1213, 1825, 2010
BstHHI GCGC 1 cut(s) 224
BstKTI GATC 7 cut(s) 364, 415, 1483, 1700, 1783, 2059, 2156
BstMAI GTCTC 7 cut(s) 217, 1285, 1441, 1509, 2355, 2386, 2395
BstMBI GATC 7 cut(s) 361, 412, 1480, 1697, 1780, 2056, 2153
BstMCI CGRYCG 1 cut(s) 364
BstMWI GCNNNNNNNGC 5 cut(s) 1241, 1250, 1867, 2073, 2192
BstNSI RCATGY 4 cut(s) 1042, 2113, 2260, 2375
BstSLI GKGCMC 1 cut(s) 1360
BstV1I GCAGC 3 cut(s) 415, 944, 2207
BstX2I RGATCY 2 cut(s) 1480, 1697
BstYI RGATCY 2 cut(s) 1480, 1697
BsuI GTATCC 1 cut(s) 973
BsuRI GGCC 6 cut(s) 440, 712, 1170, 1773, 2067, 2076
BtgI CCRYGG 2 cut(s) 1090, 2167
BtsCI GGATG 7 cut(s) 477, 520, 577, 769, 1213, 1825, 2010
BtsI GCAGTG 2 cut(s) 668, 1875
BtsIMutI CAGTG 4 cut(s) 651, 668, 1535, 1875
BveI ACCTGC 2 cut(s) 811, 2261
CfoI GCGC 1 cut(s) 224
Cfr10I RCCGGY 1 cut(s) 742
Cfr13I GGNCC 1 cut(s) 306
CpoI CGGWCCG 1 cut(s) 306
CseI GACGC 3 cut(s) 199, 867, 1173
Csp6I GTAC 3 cut(s) 816, 2120, 2236
CspI CGGWCCG 1 cut(s) 306
CviQI GTAC 3 cut(s) 816, 2120, 2236
DdeI CTNAG 8 cut(s) 26, 351, 566, 600, 1511, 1554, 1580, 1791
DpnI GATC 7 cut(s) 363, 414, 1482, 1699, 1782, 2058, 2155
DpnII GATC 7 cut(s) 361, 412, 1480, 1697, 1780, 2056, 2153
DriI GACNNNNNGTC 1 cut(s) 1522
EaeI YGGCCR 2 cut(s) 1771, 2065
Eam1105I GACNNNNNGTC 1 cut(s) 1522
EciI GGCGGA 1 cut(s) 263
Eco130I CCWWGG 4 cut(s) 1090, 1378, 2062, 2167
Eco147I AGGCCT 1 cut(s) 440
Eco47I GGWCC 1 cut(s) 306
EcoRI GAATTC 1 cut(s) 2407
EcoT14I CCWWGG 4 cut(s) 1090, 1378, 2062, 2167
EcoT22I ATGCAT 2 cut(s) 841, 1620
ErhI CCWWGG 4 cut(s) 1090, 1378, 2062, 2167
Esp3I CGTCTC 3 cut(s) 217, 1509, 2355
FauI CCCGC 1 cut(s) 48
FbaI TGATCA 1 cut(s) 412
Fnu4HI GCNGC 6 cut(s) 44, 47, 397, 404, 933, 2196
FokI GGATG 7 cut(s) 484, 527, 584, 776, 1220, 1832, 2017
Fsp4HI GCNGC 6 cut(s) 44, 47, 397, 404, 933, 2196
FspBI CTAG 5 cut(s) 500, 942, 1061, 1478, 1862
GlaI GCGC 1 cut(s) 223
GluI GCNGC 6 cut(s) 44, 47, 397, 404, 933, 2196
GsaI CCCAGC 2 cut(s) 1080, 1367
GsuI CTGGAG 1 cut(s) 2417
HaeIII GGCC 6 cut(s) 440, 712, 1170, 1773, 2067, 2076
HapII CCGG 2 cut(s) 304, 743
HgaI GACGC 3 cut(s) 199, 867, 1173
HhaI GCGC 1 cut(s) 224
Hin1I GRCGYC 2 cut(s) 878, 1184
Hin6I GCGC 1 cut(s) 222
HinP1I GCGC 1 cut(s) 222
HindIII AAGCTT 1 cut(s) 1712
HpaII CCGG 2 cut(s) 304, 743
HphI GGTGA 9 cut(s) 98, 124, 472, 835, 1018, 1321, 1322, 1877, 2308
Hpy166II GTNNAC 3 cut(s) 358, 520, 1358
Hpy188III TCNNGA 3 cut(s) 1751, 2222, 2360
Hpy8I GTNNAC 3 cut(s) 358, 520, 1358
Hpy99I CGWCG 2 cut(s) 266, 883
HpyAV CCTTC 6 cut(s) 259, 460, 574, 868, 1382, 1975
HpyCH4III ACNGT 3 cut(s) 292, 557, 2345
HpyCH4IV ACGT 2 cut(s) 522, 1125
HpyF10VI GCNNNNNNNGC 5 cut(s) 1241, 1250, 1867, 2073, 2192
HpyF3I CTNAG 8 cut(s) 26, 351, 566, 600, 1511, 1554, 1580, 1791
HpySE526I ACGT 2 cut(s) 522, 1125
Hsp92I GRCGYC 2 cut(s) 878, 1184
HspAI GCGC 1 cut(s) 222
Ksp22I TGATCA 1 cut(s) 412
Kzo9I GATC 7 cut(s) 361, 412, 1480, 1697, 1780, 2056, 2153
LmnI GCTCC 2 cut(s) 347, 393
Lsp1109I GCAGC 3 cut(s) 415, 944, 2207
LweI GCATC 5 cut(s) 562, 1424, 1605, 1995, 2116
MaeI CTAG 5 cut(s) 500, 942, 1061, 1478, 1862
MaeII ACGT 2 cut(s) 522, 1125
MaeIII GTNAC 5 cut(s) 656, 823, 1024, 1041, 1327
MalI GATC 7 cut(s) 363, 414, 1482, 1699, 1782, 2058, 2155
MbiI CCGCTC 1 cut(s) 396
MboI GATC 7 cut(s) 361, 412, 1480, 1697, 1780, 2056, 2153
MboII GAAGA 7 cut(s) 475, 1334, 1337, 1919, 2096, 2294, 2338
MfeI CAATTG 2 cut(s) 1278, 2115
MflI RGATCY 2 cut(s) 1480, 1697
MhlI GDGCHC 1 cut(s) 1360
MlyI GAGTC 4 cut(s) 260, 443, 913, 1715
MmeI TCCRAC 5 cut(s) 162, 845, 1251, 1836, 2365
Mph1103I ATGCAT 2 cut(s) 841, 1620
MslI CAYNNNNRTG 4 cut(s) 18, 792, 1176, 1454
MspA1I CMGCKG 2 cut(s) 49, 910
MspI CCGG 2 cut(s) 304, 743
MunI CAATTG 2 cut(s) 1278, 2115
Mva1269I GAATGC 4 cut(s) 841, 934, 1237, 1863
MwoI GCNNNNNNNGC 5 cut(s) 1241, 1250, 1867, 2073, 2192
NcoI CCATGG 2 cut(s) 1090, 2167
NdeII GATC 7 cut(s) 361, 412, 1480, 1697, 1780, 2056, 2153
NlaIV GGNNCC 1 cut(s) 1369
NmeAIII GCCGAG 1 cut(s) 2093
NmuCI GTSAC 3 cut(s) 823, 1024, 1327
NsiI ATGCAT 2 cut(s) 841, 1620
NspI RCATGY 4 cut(s) 1042, 2113, 2260, 2375
PaeI GCATGC 2 cut(s) 2113, 2375
PaqCI CACCTGC 1 cut(s) 811
PceI AGGCCT 1 cut(s) 440
PciI ACATGT 1 cut(s) 2256
PcsI WCGNNNNNNNCGW 2 cut(s) 539, 623
PctI GAATGC 4 cut(s) 841, 934, 1237, 1863
PfeI GAWTC 8 cut(s) 509, 1118, 1574, 1690, 1925, 2163, 2356, 2429
PflMI CCANNNNNTGG 1 cut(s) 2136
PkrI GCNGC 6 cut(s) 45, 48, 398, 405, 934, 2197
Ple19I CGATCG 1 cut(s) 364
PleI GAGTC 4 cut(s) 260, 443, 912, 1715
PpsI GAGTC 4 cut(s) 260, 443, 912, 1715
Ppu21I YACGTR 1 cut(s) 523
PscI ACATGT 1 cut(s) 2256
PshBI ATTAAT 1 cut(s) 1145
PspFI CCCAGC 2 cut(s) 1076, 1363
PspN4I GGNNCC 1 cut(s) 1369
PspPI GGNCC 1 cut(s) 306
PsuI RGATCY 2 cut(s) 1480, 1697
PvuI CGATCG 1 cut(s) 364
RsaI GTAC 3 cut(s) 817, 2121, 2237
RsaNI GTAC 3 cut(s) 816, 2120, 2236
RseI CAYNNNNRTG 4 cut(s) 18, 792, 1176, 1454
Rsr2I CGGWCCG 1 cut(s) 306
RsrII CGGWCCG 1 cut(s) 306
SatI GCNGC 6 cut(s) 44, 47, 397, 404, 933, 2196
Sau3AI GATC 7 cut(s) 361, 412, 1480, 1697, 1780, 2056, 2153
Sau96I GGNCC 1 cut(s) 306
SchI GAGTC 4 cut(s) 260, 443, 913, 1715
SduI GDGCHC 1 cut(s) 1360
SfaNI GCATC 5 cut(s) 562, 1424, 1605, 1995, 2116
SfiI GGCCNNNNNGGCC 1 cut(s) 2073
SinI GGWCC 1 cut(s) 306
SmiMI CAYNNNNRTG 4 cut(s) 18, 792, 1176, 1454
SmlI CTYRAG 1 cut(s) 1265
SmoI CTYRAG 1 cut(s) 1265
SpeI ACTAGT 1 cut(s) 941
SphI GCATGC 2 cut(s) 2113, 2375
SseBI AGGCCT 1 cut(s) 440
SspI AATATT 2 cut(s) 1219, 2020
SspMI CTAG 5 cut(s) 500, 942, 1061, 1478, 1862
StuI AGGCCT 1 cut(s) 440
StyI CCWWGG 4 cut(s) 1090, 1378, 2062, 2167
TaaI ACNGT 3 cut(s) 292, 557, 2345
TaiI ACGT 2 cut(s) 525, 1128
TaqI TCGA 4 cut(s) 408, 881, 1489, 2359
TauI GCSGC 3 cut(s) 46, 49, 399
TfiI GAWTC 8 cut(s) 509, 1118, 1574, 1690, 1925, 2163, 2356, 2429
TscAI CASTG 4 cut(s) 651, 675, 1542, 1882
TseFI GTSAC 3 cut(s) 823, 1024, 1327
TseI GCWGC 3 cut(s) 403, 932, 2195
Tsp45I GTSAC 3 cut(s) 823, 1024, 1327
TspGWI ACGGA 2 cut(s) 470, 592
TspRI CASTG 4 cut(s) 651, 675, 1542, 1882
Van91I CCANNNNNTGG 1 cut(s) 2136
VneI GTGCAC 1 cut(s) 1356
VpaK11BI GGWCC 1 cut(s) 306
VspI ATTAAT 1 cut(s) 1145
XapI RAATTY 4 cut(s) 691, 1314, 1389, 2407
XceI RCATGY 4 cut(s) 1042, 2113, 2260, 2375
XcmI CCANNNNNNNNNTGG 1 cut(s) 352
XspI CTAG 5 cut(s) 500, 942, 1061, 1478, 1862
Zsp2I ATGCAT 2 cut(s) 841, 1620
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.