MD15G1186900.v1.1

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0013595
Physical Location & Seq
Forward (+)
14747243 .. 14749757
2515 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1186900.v1.1.491

Sequence Viewer

Length: 2475 bp
ATGTTAAACCACCTTCACCATGCATTAAGGCAGTTTCACTTGGCTCTGCTACTCTCATGCAGCAAATATAATTACAAATCAAATCCCGCCCGAACCTTGTATCTCTCTACCACCACAACGCCTTGTACACATGCCTCACCAACTTACCCTCGTTCTGATCTCCTCATGCTCAGCTCCAACGTCCAAACCCTTCGCCAAACCAAGCAAGTTCACGCCTCTGCTCTTCTCAACGGAGTACTGCCCCACAGTGTCTCTCTATGTGCCTCCCTCATGCTCAGATACGCCACTTTCAGATCCCCAGAAACCTTTCACCATCTCTTCCAACAAACAGTCCAGCATTGTCACACTGCTTTCTTGTGGAACACCCTCATACGGGCTTGCTCCATTGCTCAAGTTAATGATAATTTTCAGGCTTATAATCAAATGGTTCGGAGCGGTGTTGGACCCGATGACTATACTTTTCCTTTTGTTCTCAAGGCATGTGCAGACCTTTTGGAGGTAAAAAAAGGGATGGAGGTTCATGGGATTGTTTTTAAAGTGGGATTTGATTATGATGTTTTCGTTGGAAATACCCTTATGTTGTTTTATGGTAATTGTGGGGATCTGAGAGATGCAAAGAGGATATTTGATGAAATGCGTGAAAGGGATGTTGTCTCATGGAATACAGTTATTGGGGTGCTTTCGGTCAATGAGTGCTACGTGGAAGCACTTGATTATTATAGAGAGATGAATTCGGCAATTGGGTTTAAGCCAAATGTTGTTACTGTTATCAGTGTGCTGCCAGTTTGTGCAGAGCTCAAAGATGAGTTGATGGTGATCCAGATTCACAGCTATGTTGTGAAGGTTGGTTTGGATCTTTTGGTGACTACTGGAAATGCATTGGTTGACGTGTATGGGAAATGTGGGAATGTGAAGGCTTCAAAACAAATTTTTGATGAGATAATTCAGAAGAATGAGGTTTCTTGGAATGCATCTATTACCAGTCTCTCTTACGTGGGGCATAATTTGGAAGCCTTAAATACATTTAGGTTGATGATTGATGTAGGGGTTAAACCAAACTCTGTCACCATTTCTAGCATGCTACCAGTGTTAGTTGAACTAGAATTCTTTGGAGTTGGCAGAGAACTCCATTGTTTCAGTGTCAGAACAGGTATTGAAACAGATATCTTCATTGCCAACTCATTAATTGATATGTATGCAAAATCAGGCCGTCCAAATGAGGCATCGAATGTGTTCCAAGAGATGGATAAAAGGAATATTGTTTCTTGGAATGCCATGATTGCTAATTTTTCTCAAAACAGGTATGAGTTGGAAGCCATTGGACTTGTGAAGCAAATGCAAGCTCATGATGCAATTCCCAACTCTGTAACCTTCACAAATCTTCTTCCAGCTTGTGCTCGTTTGGGTTCCCGCCGTCTTGGAAAAGAAATCCACGCAATGACAGTTCGCATGGGATCTGCCTCAGATTTGTTTGTCTCTAATGCTTTGACAGACATGTACGCAAAGTGTGGCTGTCTAGGTCTTGCTCGAAATGTGTTTAACATCTCCGTCAGAGATGAGATTTCTTATAATATACTTATAGTAGGTTATTCTCAAACTACTGATTGCTTAGAATCTCTGAGTTTGTTTTCTGAAATGAAGCTTAAGGGAATGATGCATGGCGTTGTTTCCTTTATGGGAGTTATATCAGCTTGCGCAAATCTAACTGCAATCAAGCAGGGCAAAGAGATTCATGGATTTTTAGTAAGAAAGATTTCTGATACTCATCTCTTTGTTGCTAACTCGCTTTTGGATTTTTATACCAAATGTGGGCGAATTGATCTTGCTGCTAAGGTCTTCTATTGCATGCCAAGCAAGGATGTAGCTTCATGGAATACTATGATTTTGGGATATGGAATGCTAGGTGAGCTTAACATTGCAATCCGTCTTTTTGAAAAAATGAGGGAAGAAGGTGTAGAATACGATTCAGTTTCATACATTGCAGTTTTGTCATCTTGTAGCCATGGAGGGCTAGTTGAGAAAGGTAAAAAATACTTTGAGGAGATGCGCACACAAAATATTGAGCCAACAGAAAAGCACTATGCTTGCATGGTTGACCTCCTTGGGCGAGCTGGCCTTATGGAAGAAGCAGCAGAACTTATTAAAGGCATGCCAATTGTACCCGATGCCAACATTTGGGGTGCTTTGCTCGGGGCATGCCGAATCCATGGGAATTTAGAGTTGGCGAGTTGGGCAGCAGAGCATCTGTTTGAGTTGAAGCCTGATCATTCTGGGTACTATATACTTCTTTCAAACATGTATGCAGAAGCTGGGAGATGGGAAGAGGTAAACAGGGTGAGGGAACTGATGAAATCAAGGAAAGTGAAGAAGGACTGTGCTATCAGTTGGGTTCAGGTTCGGGACCAGGCGCATGCTTTCATAGTTGGAGATGCAATGGAGACATTAAATTCAGACAGTTGGCTCGCAGAATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

825

Amino Acids

92.18

Weight (kDa)

6.37

Isoelectric Point (pI)

36.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 117 - 162 2.1e-06 PPR repeat family
PPR_2 PF13041 318 - 362 2.8e-06 PPR repeat family
PPR_2 PF13041 388 - 420 4.2e-06 PPR repeat family
PPR PF01535 393 - 420 5.7e-06 PPR repeat
PPR_2 PF13041 418 - 467 2.2e-07 PPR repeat family
PPR_2 PF13041 619 - 667 6.3e-10 PPR repeat family
PPR PF01535 623 - 652 2.4e-06 PPR repeat
PPR_long PF17177 637 - 784 8e-08 Pentacotripeptide-repeat region of PRORP
E_motif PF20431 736 - 798 5.2e-20 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013595)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20891
malus_domestica MD15G1186900.v1.1
prunus_persica Prupe.6G186500_v2.0.a1
pyrus_communis pycom15g16750
rosa_chinensis RchiOBHm_Chr2g0113511
rosa_laevigata RLG00000018071
rosa_multiflora Rmu_sc0000929.1_g000048 Rmu_sc0007415.1_g000023
rosa_roxburghii Rroxscaffold_2G00129180 Rroxscaffold_2G00129970
rosa_rugosa Rorug02G0187900 Rorug02G0188000
rosa_samantha Rh2AG242600 Rh2BG256500 Rh2CG246800 Rh2CG246900 Rh2DG250600
rosa_wichuraiana Rw2G018970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 417, 1569
Acc16I TGCGCA 2 cut(s) 1696, 2048
AccB7I CCANNNNNTGG 2 cut(s) 1243, 2175
AccBSI CCGCTC 1 cut(s) 435
AciI CCGC 3 cut(s) 87, 435, 1411
AclWI GGATC 5 cut(s) 288, 609, 811, 861, 1462
AcsI RAATTY 5 cut(s) 730, 927, 1103, 2212, 2446
AfaI GTAC 5 cut(s) 127, 237, 1499, 2160, 2276
AfiI CCNNNNNNNGG 6 cut(s) 372, 373, 496, 1243, 1809, 2175
AflII CTTAAG 1 cut(s) 1643
AflIII ACRYGT 3 cut(s) 888, 1494, 2295
AgsI TTSAA 6 cut(s) 921, 1097, 1157, 1934, 2257, 2292
AjiI CACGTC 1 cut(s) 889
AjnI CCWGG 1 cut(s) 2403
AjuI GAANNNNNNNTTGG 4 cut(s) 833, 865, 2204, 2236
Alw21I GWGCWC 2 cut(s) 798, 1399
Alw26I GTCTC 5 cut(s) 256, 658, 989, 1480, 2432
AlwI GGATC 5 cut(s) 288, 609, 811, 861, 1462
AlwNI CAGNNNCTG 1 cut(s) 2309
Ama87I CYCGRG 1 cut(s) 2189
AoxI GGCC 2 cut(s) 1207, 2113
ApeKI GCWGC 5 cut(s) 60, 778, 1826, 2129, 2234
ApoI RAATTY 5 cut(s) 730, 927, 1103, 2212, 2446
AseI ATTAAT 1 cut(s) 1184
Asp700I GAANNNNTTC 3 cut(s) 306, 1232, 1753
AspLEI GCGC 3 cut(s) 1697, 2049, 2410
AspS9I GGNCC 2 cut(s) 443, 2401
AsuHPI GGTGA 8 cut(s) 8, 129, 302, 826, 874, 1057, 1916, 2347
AvaI CYCGRG 1 cut(s) 2189
AvaII GGWCC 2 cut(s) 443, 2401
BanII GRGCYC 1 cut(s) 798
BbsI GAAGAC 1 cut(s) 1828
Bbv12I GWGCWC 2 cut(s) 798, 1399
BbvI GCAGC 5 cut(s) 72, 765, 1813, 2141, 2246
BccI CCATC 5 cut(s) 321, 505, 805, 1237, 2310
BceAI ACGGC 2 cut(s) 1194, 1398
BciT130I CCWGG 1 cut(s) 2405
BclI TGATCA 1 cut(s) 2263
BcoDI GTCTC 5 cut(s) 256, 658, 989, 1480, 2432
BfaI CTAG 5 cut(s) 1074, 1100, 1517, 1901, 2012
BfrI CTTAAG 1 cut(s) 1643
BisI GCNGC 5 cut(s) 61, 779, 1827, 2130, 2235
BlpI GCTNAGC 1 cut(s) 170
BlsI GCNGC 5 cut(s) 62, 780, 1828, 2131, 2236
BmcAI AGTACT 1 cut(s) 237
Bme1390I CCNGG 1 cut(s) 2405
Bme18I GGWCC 2 cut(s) 443, 2401
BmeT110I CYCGRG 1 cut(s) 2189
BmgBI CACGTC 1 cut(s) 889
BmgT120I GGNCC 2 cut(s) 443, 2401
BmiI GGNNCC 3 cut(s) 445, 1408, 2402
BmrFI CCNGG 1 cut(s) 2405
BmsI GCATC 9 cut(s) 601, 980, 1232, 1339, 1644, 2034, 2155, 2251, 2419
BpiI GAAGAC 1 cut(s) 1828
Bpu10I CCTNAGC 1 cut(s) 1830
Bpu1102I GCTNAGC 1 cut(s) 170
BpuEI CTTGAG 2 cut(s) 375, 458
BsaAI YACGTR 2 cut(s) 700, 994
BsaBI GATNNNNATC 2 cut(s) 815, 1764
BsaJI CCNNGG 3 cut(s) 2002, 2101, 2206
BsaXI ACNNNNNCTCC 2 cut(s) 1998, 2028
Bsc4I CCNNNNNNNGG 6 cut(s) 372, 373, 496, 1243, 1809, 2175
Bse1I ACTGG 4 cut(s) 782, 874, 981, 1085
Bse3DI GCAATG 6 cut(s) 384, 1170, 1443, 1914, 1977, 2439
Bse8I GATNNNNATC 2 cut(s) 815, 1764
BseBI CCWGG 1 cut(s) 2405
BseDI CCNNGG 3 cut(s) 2002, 2101, 2206
BseGI GGATG 3 cut(s) 516, 652, 1864
BseJI GATNNNNATC 2 cut(s) 815, 1764
BseLI CCNNNNNNNGG 6 cut(s) 372, 373, 496, 1243, 1809, 2175
BseMI GCAATG 6 cut(s) 384, 1170, 1443, 1914, 1977, 2439
BseMII CTCAG 5 cut(s) 184, 289, 596, 1476, 1610
BseNI ACTGG 4 cut(s) 782, 874, 981, 1085
BseRI GAGGAG 2 cut(s) 152, 2054
BseXI GCAGC 5 cut(s) 72, 765, 1813, 2141, 2246
BseYI CCCAGC 1 cut(s) 2309
BsgI GTGCAG 2 cut(s) 504, 810
BshFI GGCC 2 cut(s) 1209, 2115
BsiHKAI GWGCWC 2 cut(s) 798, 1399
BsiHKCI CYCGRG 1 cut(s) 2189
BslFI GGGAC 1 cut(s) 2414
BslI CCNNNNNNNGG 6 cut(s) 372, 373, 496, 1243, 1809, 2175
BsmAI GTCTC 5 cut(s) 256, 658, 989, 1480, 2432
BsmFI GGGAC 1 cut(s) 2414
BsmI GAATGC 3 cut(s) 973, 1276, 1902
BsnI GGCC 2 cut(s) 1209, 2115
BsoBI CYCGRG 1 cut(s) 2189
Bsp1286I GDGCHC 2 cut(s) 798, 1399
Bsp1407I TGTACA 1 cut(s) 125
Bsp143I GATC 8 cut(s) 157, 293, 601, 816, 853, 1454, 1819, 2263
Bsp1720I GCTNAGC 1 cut(s) 170
Bsp19I CCATGG 2 cut(s) 2002, 2206
BspACI CCGC 3 cut(s) 87, 435, 1411
BspANI GGCC 2 cut(s) 1209, 2115
BspCNI CTCAG 5 cut(s) 183, 288, 597, 1475, 1611
BspHI TCATGA 1 cut(s) 1345
BspLI GGNNCC 3 cut(s) 445, 1408, 2402
BspPI GGATC 5 cut(s) 288, 609, 811, 861, 1462
BspQI GCTCTTC 1 cut(s) 228
BspTI CTTAAG 1 cut(s) 1643
BsrBI CCGCTC 1 cut(s) 435
BsrDI GCAATG 6 cut(s) 384, 1170, 1443, 1914, 1977, 2439
BsrGI TGTACA 1 cut(s) 125
BsrI ACTGG 4 cut(s) 782, 874, 981, 1085
BssECI CCNNGG 3 cut(s) 2002, 2101, 2206
BssMI GATC 8 cut(s) 157, 293, 601, 816, 853, 1454, 1819, 2263
BssT1I CCWWGG 3 cut(s) 2002, 2101, 2206
Bst2UI CCWGG 1 cut(s) 2405
Bst4CI ACNGT 7 cut(s) 248, 331, 667, 766, 1444, 2375, 2456
Bst6I CTCTTC 3 cut(s) 228, 323, 2316
BstAFI CTTAAG 1 cut(s) 1643
BstAUI TGTACA 1 cut(s) 125
BstBAI YACGTR 2 cut(s) 700, 994
BstDEI CTNAG 8 cut(s) 170, 275, 605, 1462, 1609, 1619, 1830, 2472
BstDSI CCRYGG 2 cut(s) 2002, 2206
BstENI CCTNNNNNAGG 1 cut(s) 494
BstF5I GGATG 3 cut(s) 516, 652, 1864
BstHHI GCGC 3 cut(s) 1697, 2049, 2410
BstKTI GATC 8 cut(s) 160, 296, 604, 819, 856, 1457, 1822, 2266
BstMAI GTCTC 5 cut(s) 256, 658, 989, 1480, 2432
BstMBI GATC 8 cut(s) 157, 293, 601, 816, 853, 1454, 1819, 2263
BstMWI GCNNNNNNNGC 5 cut(s) 1280, 1349, 1851, 1906, 2231
BstNI CCWGG 1 cut(s) 2405
BstNSI RCATGY 9 cut(s) 134, 483, 1081, 1498, 1849, 2152, 2199, 2299, 2414
BstSCI CCNGG 1 cut(s) 2403
BstV1I GCAGC 5 cut(s) 72, 765, 1813, 2141, 2246
BstV2I GAAGAC 1 cut(s) 1828
BstX2I RGATCY 4 cut(s) 293, 601, 853, 1454
BstYI RGATCY 4 cut(s) 293, 601, 853, 1454
BsuRI GGCC 2 cut(s) 1209, 2115
BtgI CCRYGG 2 cut(s) 2002, 2206
BtrI CACGTC 1 cut(s) 889
BtsCI GGATG 3 cut(s) 516, 652, 1864
BtsI GCAGTG 1 cut(s) 345
BtsIMutI CAGTG 5 cut(s) 253, 345, 778, 1092, 1144
CaiI CAGNNNCTG 1 cut(s) 2309
CciI TCATGA 1 cut(s) 1345
CfoI GCGC 3 cut(s) 1697, 2049, 2410
Cfr13I GGNCC 2 cut(s) 443, 2401
Csp6I GTAC 5 cut(s) 126, 236, 1498, 2159, 2275
CviQI GTAC 5 cut(s) 126, 236, 1498, 2159, 2275
DdeI CTNAG 8 cut(s) 170, 275, 605, 1462, 1609, 1619, 1830, 2472
DpnI GATC 8 cut(s) 159, 295, 603, 818, 855, 1456, 1821, 2265
DpnII GATC 8 cut(s) 157, 293, 601, 816, 853, 1454, 1819, 2263
DraI TTTAAA 1 cut(s) 535
Eam1104I CTCTTC 3 cut(s) 228, 323, 2316
EarI CTCTTC 3 cut(s) 228, 323, 2316
Ecl136II GAGCTC 1 cut(s) 796
Eco130I CCWWGG 3 cut(s) 2002, 2101, 2206
Eco24I GRGCYC 1 cut(s) 798
Eco32I GATATC 1 cut(s) 1165
Eco47I GGWCC 2 cut(s) 443, 2401
Eco53kI GAGCTC 1 cut(s) 796
Eco88I CYCGRG 1 cut(s) 2189
EcoICRI GAGCTC 1 cut(s) 796
EcoNI CCTNNNNNAGG 1 cut(s) 494
EcoRI GAATTC 2 cut(s) 730, 1103
EcoRII CCWGG 1 cut(s) 2403
EcoRV GATATC 1 cut(s) 1165
EcoT14I CCWWGG 3 cut(s) 2002, 2101, 2206
EcoT22I ATGCAT 4 cut(s) 25, 880, 973, 1659
EcoT38I GRGCYC 1 cut(s) 798
ErhI CCWWGG 3 cut(s) 2002, 2101, 2206
FaqI GGGAC 1 cut(s) 2414
FauI CCCGC 2 cut(s) 94, 1418
FbaI TGATCA 1 cut(s) 2263
Fnu4HI GCNGC 5 cut(s) 61, 779, 1827, 2130, 2235
FokI GGATG 3 cut(s) 523, 659, 1871
FriOI GRGCYC 1 cut(s) 798
Fsp4HI GCNGC 5 cut(s) 61, 779, 1827, 2130, 2235
FspAI RTGCGCAY 1 cut(s) 2048
FspBI CTAG 5 cut(s) 1074, 1100, 1517, 1901, 2012
FspI TGCGCA 2 cut(s) 1696, 2048
GlaI GCGC 3 cut(s) 1696, 2048, 2409
GluI GCNGC 5 cut(s) 61, 779, 1827, 2130, 2235
GsaI CCCAGC 1 cut(s) 2313
HaeIII GGCC 2 cut(s) 1209, 2115
HhaI GCGC 3 cut(s) 1697, 2049, 2410
Hin6I GCGC 3 cut(s) 1695, 2047, 2408
HinP1I GCGC 3 cut(s) 1695, 2047, 2408
HincII GTYRAC 2 cut(s) 886, 2095
HindII GTYRAC 2 cut(s) 886, 2095
HindIII AAGCTT 1 cut(s) 1640
HinfI GANTC 6 cut(s) 823, 1613, 1729, 1964, 2202, 2468
HphI GGTGA 8 cut(s) 8, 129, 302, 826, 874, 1057, 1916, 2347
Hpy166II GTNNAC 5 cut(s) 128, 211, 886, 2095, 2329
Hpy188III TCNNGA 3 cut(s) 820, 1346, 2399
Hpy8I GTNNAC 5 cut(s) 128, 211, 886, 2095, 2329
HpyAV CCTTC 7 cut(s) 23, 200, 835, 907, 1381, 1943, 2362
HpyCH4III ACNGT 7 cut(s) 248, 331, 667, 766, 1444, 2375, 2456
HpyCH4IV ACGT 4 cut(s) 180, 699, 888, 993
HpyF10VI GCNNNNNNNGC 5 cut(s) 1280, 1349, 1851, 1906, 2231
HpyF3I CTNAG 8 cut(s) 170, 275, 605, 1462, 1609, 1619, 1830, 2472
HpySE526I ACGT 4 cut(s) 180, 699, 888, 993
HspAI GCGC 3 cut(s) 1695, 2047, 2408
Ksp22I TGATCA 1 cut(s) 2263
Kzo9I GATC 8 cut(s) 157, 293, 601, 816, 853, 1454, 1819, 2263
LguI GCTCTTC 1 cut(s) 228
LmnI GCTCC 3 cut(s) 179, 386, 432
Lsp1109I GCAGC 5 cut(s) 72, 765, 1813, 2141, 2246
LweI GCATC 9 cut(s) 601, 980, 1232, 1339, 1644, 2034, 2155, 2251, 2419
MaeI CTAG 5 cut(s) 1074, 1100, 1517, 1901, 2012
MaeII ACGT 4 cut(s) 180, 699, 888, 993
MaeIII GTNAC 5 cut(s) 341, 760, 862, 1063, 1366
MalI GATC 8 cut(s) 159, 295, 603, 818, 855, 1456, 1821, 2265
MbiI CCGCTC 1 cut(s) 435
MboI GATC 8 cut(s) 157, 293, 601, 816, 853, 1454, 1819, 2263
MfeI CAATTG 2 cut(s) 738, 2154
MflI RGATCY 4 cut(s) 293, 601, 853, 1454
MhlI GDGCHC 2 cut(s) 798, 1399
MmeI TCCRAC 6 cut(s) 201, 346, 421, 544, 1290, 2404
Mph1103I ATGCAT 4 cut(s) 25, 880, 973, 1659
MroXI GAANNNNTTC 3 cut(s) 306, 1232, 1753
MslI CAYNNNNRTG 1 cut(s) 831
MspCI CTTAAG 1 cut(s) 1643
MspR9I CCNGG 1 cut(s) 2405
MunI CAATTG 2 cut(s) 738, 2154
Mva1269I GAATGC 3 cut(s) 973, 1276, 1902
MvaI CCWGG 1 cut(s) 2405
MwoI GCNNNNNNNGC 5 cut(s) 1280, 1349, 1851, 1906, 2231
NcoI CCATGG 2 cut(s) 2002, 2206
NdeII GATC 8 cut(s) 157, 293, 601, 816, 853, 1454, 1819, 2263
NlaIV GGNNCC 3 cut(s) 445, 1408, 2402
NmuCI GTSAC 3 cut(s) 341, 862, 1063
NsbI TGCGCA 2 cut(s) 1696, 2048
NsiI ATGCAT 4 cut(s) 25, 880, 973, 1659
NspI RCATGY 9 cut(s) 134, 483, 1081, 1498, 1849, 2152, 2199, 2299, 2414
PaeI GCATGC 5 cut(s) 1081, 1849, 2152, 2199, 2414
PagI TCATGA 1 cut(s) 1345
PciI ACATGT 2 cut(s) 1494, 2295
PciSI GCTCTTC 1 cut(s) 228
PctI GAATGC 3 cut(s) 973, 1276, 1902
PdmI GAANNNNTTC 3 cut(s) 306, 1232, 1753
PfeI GAWTC 6 cut(s) 823, 1613, 1729, 1964, 2202, 2468
PflMI CCANNNNNTGG 2 cut(s) 1243, 2175
PkrI GCNGC 5 cut(s) 62, 780, 1828, 2131, 2236
Ppu21I YACGTR 2 cut(s) 700, 994
PscI ACATGT 2 cut(s) 1494, 2295
PshBI ATTAAT 1 cut(s) 1184
PsiI TTATAA 2 cut(s) 417, 1569
Psp124BI GAGCTC 1 cut(s) 798
Psp6I CCWGG 1 cut(s) 2403
PspFI CCCAGC 1 cut(s) 2309
PspGI CCWGG 1 cut(s) 2403
PspN4I GGNNCC 3 cut(s) 445, 1408, 2402
PspPI GGNCC 2 cut(s) 443, 2401
PstNI CAGNNNCTG 1 cut(s) 2309
PsuI RGATCY 4 cut(s) 293, 601, 853, 1454
RsaI GTAC 5 cut(s) 127, 237, 1499, 2160, 2276
RsaNI GTAC 5 cut(s) 126, 236, 1498, 2159, 2275
RseI CAYNNNNRTG 1 cut(s) 831
SacI GAGCTC 1 cut(s) 798
SapI GCTCTTC 1 cut(s) 228
SatI GCNGC 5 cut(s) 61, 779, 1827, 2130, 2235
Sau3AI GATC 8 cut(s) 157, 293, 601, 816, 853, 1454, 1819, 2263
Sau96I GGNCC 2 cut(s) 443, 2401
ScaI AGTACT 1 cut(s) 237
ScrFI CCNGG 1 cut(s) 2405
SduI GDGCHC 2 cut(s) 798, 1399
SfaNI GCATC 9 cut(s) 601, 980, 1232, 1339, 1644, 2034, 2155, 2251, 2419
SinI GGWCC 2 cut(s) 443, 2401
SmiMI CAYNNNNRTG 1 cut(s) 831
SmlI CTYRAG 3 cut(s) 390, 473, 1643
SmoI CTYRAG 3 cut(s) 390, 473, 1643
SphI GCATGC 5 cut(s) 1081, 1849, 2152, 2199, 2414
SsiI CCGC 3 cut(s) 87, 435, 1411
SspI AATATT 2 cut(s) 1258, 2059
SspMI CTAG 5 cut(s) 1074, 1100, 1517, 1901, 2012
SstI GAGCTC 1 cut(s) 798
StyD4I CCNGG 1 cut(s) 2403
StyI CCWWGG 3 cut(s) 2002, 2101, 2206
TaaI ACNGT 7 cut(s) 248, 331, 667, 766, 1444, 2375, 2456
TaiI ACGT 4 cut(s) 183, 702, 891, 996
TaqI TCGA 2 cut(s) 1226, 1528
TaqII GACCGA 1 cut(s) 673
TatI WGTACW 2 cut(s) 125, 235
TfiI GAWTC 6 cut(s) 823, 1613, 1729, 1964, 2202, 2468
TscAI CASTG 5 cut(s) 253, 352, 778, 1092, 1144
TseFI GTSAC 3 cut(s) 341, 862, 1063
TseI GCWGC 5 cut(s) 60, 778, 1826, 2129, 2234
Tsp45I GTSAC 3 cut(s) 341, 862, 1063
TspGWI ACGGA 3 cut(s) 246, 1537, 1913
TspRI CASTG 5 cut(s) 253, 352, 778, 1092, 1144
Van91I CCANNNNNTGG 2 cut(s) 1243, 2175
Vha464I CTTAAG 1 cut(s) 1643
VpaK11BI GGWCC 2 cut(s) 443, 2401
VspI ATTAAT 1 cut(s) 1184
XagI CCTNNNNNAGG 1 cut(s) 494
XapI RAATTY 5 cut(s) 730, 927, 1103, 2212, 2446
XceI RCATGY 9 cut(s) 134, 483, 1081, 1498, 1849, 2152, 2199, 2299, 2414
XmnI GAANNNNTTC 3 cut(s) 306, 1232, 1753
XspI CTAG 5 cut(s) 1074, 1100, 1517, 1901, 2012
ZrmI AGTACT 1 cut(s) 237
Zsp2I ATGCAT 4 cut(s) 25, 880, 973, 1659
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.