Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g20891 |
| malus_domestica | MD15G1186900.v1.1 |
| prunus_persica | Prupe.6G186500_v2.0.a1 |
| pyrus_communis | pycom15g16750 |
| rosa_chinensis | RchiOBHm_Chr2g0113511 |
| rosa_laevigata | RLG00000018071 |
| rosa_multiflora | Rmu_sc0000929.1_g000048 Rmu_sc0007415.1_g000023 |
| rosa_roxburghii | Rroxscaffold_2G00129180 Rroxscaffold_2G00129970 |
| rosa_rugosa | Rorug02G0187900 Rorug02G0188000 |
| rosa_samantha | Rh2AG242600 Rh2BG256500 Rh2CG246800 Rh2CG246900 Rh2DG250600 |
| rosa_wichuraiana | Rw2G018970 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 811 |
| Acc16I | TGCGCA | 1 cut(s) | 751 |
| Acc36I | ACCTGC | 1 cut(s) | 811 |
| AccBSI | CCGCTC | 1 cut(s) | 396 |
| AclWI | GGATC | 2 cut(s) | 1423, 1705 |
| AcoI | YGGCCR | 1 cut(s) | 1771 |
| AcsI | RAATTY | 3 cut(s) | 691, 1314, 1389 |
| AcyI | GRCGYC | 3 cut(s) | 264, 878, 1184 |
| AfaI | GTAC | 2 cut(s) | 817, 1460 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1204 |
| AgsI | TTSAA | 5 cut(s) | 253, 1058, 1064, 1118, 1895 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1522 |
| AhlI | ACTAGT | 1 cut(s) | 941 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 794, 826 |
| AluBI | AGCT | 9 cut(s) | 420, 757, 769, 935, 1304, 1352, 1603, 1652, 1870 |
| AluI | AGCT | 9 cut(s) | 420, 757, 769, 935, 1304, 1352, 1603, 1652, 1870 |
| Alw21I | GWGCWC | 2 cut(s) | 739, 1360 |
| Alw26I | GTCTC | 4 cut(s) | 217, 1285, 1441, 1509 |
| Alw44I | GTGCAC | 2 cut(s) | 735, 1356 |
| AlwI | GGATC | 2 cut(s) | 1423, 1705 |
| AoxI | GGCC | 4 cut(s) | 438, 710, 1168, 1771 |
| ApaLI | GTGCAC | 2 cut(s) | 735, 1356 |
| ApeKI | GCWGC | 2 cut(s) | 207, 932 |
| ApoI | RAATTY | 3 cut(s) | 691, 1314, 1389 |
| AseI | ATTAAT | 1 cut(s) | 1145 |
| AspLEI | GCGC | 2 cut(s) | 224, 752 |
| BaeGI | GKGCMC | 2 cut(s) | 739, 1360 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 807, 840 |
| Bbv12I | GWGCWC | 2 cut(s) | 739, 1360 |
| BbvI | GCAGC | 2 cut(s) | 219, 944 |
| BccI | CCATC | 6 cut(s) | 254, 466, 766, 1198, 1340, 1904 |
| BceAI | ACGGC | 1 cut(s) | 1376 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 741, 775 |
| BciVI | GTATCC | 2 cut(s) | 973, 1844 |
| BclI | TGATCA | 1 cut(s) | 412 |
| BcoDI | GTCTC | 4 cut(s) | 217, 1285, 1441, 1509 |
| BcuI | ACTAGT | 1 cut(s) | 941 |
| BfaI | CTAG | 5 cut(s) | 500, 566, 942, 1478, 1862 |
| BfmI | CTRYAG | 1 cut(s) | 556 |
| BfuAI | ACCTGC | 1 cut(s) | 811 |
| BfuI | GTATCC | 2 cut(s) | 973, 1844 |
| BglII | AGATCT | 1 cut(s) | 1480 |
| BisI | GCNGC | 7 cut(s) | 44, 47, 208, 274, 304, 397, 933 |
| BlsI | GCNGC | 7 cut(s) | 45, 48, 209, 275, 305, 398, 934 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1522 |
| BmiI | GGNNCC | 1 cut(s) | 1369 |
| BmsI | GCATC | 2 cut(s) | 562, 1605 |
| Bpu10I | CCTNAGC | 1 cut(s) | 351 |
| BpuEI | CTTGAG | 1 cut(s) | 1286 |
| BsaAI | YACGTR | 1 cut(s) | 523 |
| BsaHI | GRCGYC | 3 cut(s) | 264, 878, 1184 |
| BsaJI | CCNNGG | 2 cut(s) | 1090, 1378 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 98, 128 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1204 |
| Bse118I | RCCGGY | 1 cut(s) | 742 |
| Bse1I | ACTGG | 1 cut(s) | 1046 |
| Bse3DI | GCAATG | 5 cut(s) | 25, 345, 787, 1905, 1938 |
| BseDI | CCNNGG | 2 cut(s) | 1090, 1378 |
| BseGI | GGATG | 6 cut(s) | 477, 520, 577, 769, 1213, 1825 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1204 |
| BseMI | GCAATG | 5 cut(s) | 25, 345, 787, 1905, 1938 |
| BseMII | CTCAG | 4 cut(s) | 40, 365, 591, 1568 |
| BseNI | ACTGG | 1 cut(s) | 1046 |
| BseRI | GAGGAG | 3 cut(s) | 52, 113, 176 |
| BseSI | GKGCMC | 2 cut(s) | 739, 1360 |
| BseXI | GCAGC | 2 cut(s) | 219, 944 |
| BseYI | CCCAGC | 1 cut(s) | 1363 |
| Bsh1285I | CGRYCG | 1 cut(s) | 364 |
| BshFI | GGCC | 4 cut(s) | 440, 712, 1170, 1773 |
| BsiEI | CGRYCG | 1 cut(s) | 364 |
| BsiHKAI | GWGCWC | 2 cut(s) | 739, 1360 |
| BsiSI | CCGG | 1 cut(s) | 743 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1204 |
| BsmAI | GTCTC | 4 cut(s) | 217, 1285, 1441, 1509 |
| BsmBI | CGTCTC | 2 cut(s) | 217, 1509 |
| BsmI | GAATGC | 4 cut(s) | 841, 934, 1237, 1863 |
| BsnI | GGCC | 4 cut(s) | 440, 712, 1170, 1773 |
| Bsp1286I | GDGCHC | 2 cut(s) | 739, 1360 |
| Bsp143I | GATC | 6 cut(s) | 361, 412, 1415, 1480, 1697, 1780 |
| Bsp19I | CCATGG | 1 cut(s) | 1090 |
| BspANI | GGCC | 4 cut(s) | 440, 712, 1170, 1773 |
| BspCNI | CTCAG | 4 cut(s) | 39, 364, 592, 1567 |
| BspLI | GGNNCC | 1 cut(s) | 1369 |
| BspMI | ACCTGC | 1 cut(s) | 811 |
| BspPI | GGATC | 2 cut(s) | 1423, 1705 |
| BsrBI | CCGCTC | 1 cut(s) | 396 |
| BsrDI | GCAATG | 5 cut(s) | 25, 345, 787, 1905, 1938 |
| BsrFI | RCCGGY | 1 cut(s) | 742 |
| BsrI | ACTGG | 1 cut(s) | 1046 |
| BssAI | RCCGGY | 1 cut(s) | 742 |
| BssECI | CCNNGG | 2 cut(s) | 1090, 1378 |
| BssMI | GATC | 6 cut(s) | 361, 412, 1415, 1480, 1697, 1780 |
| BssNI | GRCGYC | 3 cut(s) | 264, 878, 1184 |
| BssT1I | CCWWGG | 2 cut(s) | 1090, 1378 |
| Bst4CI | ACNGT | 2 cut(s) | 292, 557 |
| BstACI | GRCGYC | 3 cut(s) | 264, 878, 1184 |
| BstBAI | YACGTR | 1 cut(s) | 523 |
| BstC8I | GCNNGC | 5 cut(s) | 340, 401, 1040, 1302, 1475 |
| BstDEI | CTNAG | 6 cut(s) | 26, 351, 600, 1511, 1554, 1791 |
| BstDSI | CCRYGG | 1 cut(s) | 1090 |
| BstF5I | GGATG | 6 cut(s) | 477, 520, 577, 769, 1213, 1825 |
| BstHHI | GCGC | 2 cut(s) | 224, 752 |
| BstKTI | GATC | 6 cut(s) | 364, 415, 1418, 1483, 1700, 1783 |
| BstMAI | GTCTC | 4 cut(s) | 217, 1285, 1441, 1509 |
| BstMBI | GATC | 6 cut(s) | 361, 412, 1415, 1480, 1697, 1780 |
| BstMCI | CGRYCG | 1 cut(s) | 364 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 1241, 1250, 1867 |
| BstNSI | RCATGY | 1 cut(s) | 1042 |
| BstSFI | CTRYAG | 1 cut(s) | 556 |
| BstSLI | GKGCMC | 2 cut(s) | 739, 1360 |
| BstV1I | GCAGC | 2 cut(s) | 219, 944 |
| BstX2I | RGATCY | 3 cut(s) | 1415, 1480, 1697 |
| BstYI | RGATCY | 3 cut(s) | 1415, 1480, 1697 |
| BsuI | GTATCC | 2 cut(s) | 973, 1844 |
| BsuRI | GGCC | 4 cut(s) | 440, 712, 1170, 1773 |
| BtgI | CCRYGG | 1 cut(s) | 1090 |
| BtsCI | GGATG | 6 cut(s) | 477, 520, 577, 769, 1213, 1825 |
| BtsI | GCAGTG | 3 cut(s) | 668, 737, 1875 |
| BtsIMutI | CAGTG | 4 cut(s) | 668, 737, 1535, 1875 |
| BveI | ACCTGC | 1 cut(s) | 811 |
| Cac8I | GCNNGC | 5 cut(s) | 340, 401, 1040, 1302, 1475 |
| CfoI | GCGC | 2 cut(s) | 224, 752 |
| Cfr10I | RCCGGY | 1 cut(s) | 742 |
| CseI | GACGC | 5 cut(s) | 199, 272, 867, 1173, 1815 |
| Csp6I | GTAC | 2 cut(s) | 816, 1459 |
| CviQI | GTAC | 2 cut(s) | 816, 1459 |
| DdeI | CTNAG | 6 cut(s) | 26, 351, 600, 1511, 1554, 1791 |
| DpnI | GATC | 6 cut(s) | 363, 414, 1417, 1482, 1699, 1782 |
| DpnII | GATC | 6 cut(s) | 361, 412, 1415, 1480, 1697, 1780 |
| DraI | TTTAAA | 1 cut(s) | 895 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1522 |
| EaeI | YGGCCR | 1 cut(s) | 1771 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1522 |
| Eco130I | CCWWGG | 2 cut(s) | 1090, 1378 |
| Eco147I | AGGCCT | 1 cut(s) | 440 |
| EcoT14I | CCWWGG | 2 cut(s) | 1090, 1378 |
| EcoT22I | ATGCAT | 2 cut(s) | 841, 1620 |
| ErhI | CCWWGG | 2 cut(s) | 1090, 1378 |
| Esp3I | CGTCTC | 2 cut(s) | 217, 1509 |
| FauI | CCCGC | 2 cut(s) | 48, 212 |
| FbaI | TGATCA | 1 cut(s) | 412 |
| Fnu4HI | GCNGC | 7 cut(s) | 44, 47, 208, 274, 304, 397, 933 |
| FokI | GGATG | 6 cut(s) | 484, 527, 584, 776, 1220, 1832 |
| Fsp4HI | GCNGC | 7 cut(s) | 44, 47, 208, 274, 304, 397, 933 |
| FspBI | CTAG | 5 cut(s) | 500, 566, 942, 1478, 1862 |
| FspI | TGCGCA | 1 cut(s) | 751 |
| GlaI | GCGC | 2 cut(s) | 223, 751 |
| GluI | GCNGC | 7 cut(s) | 44, 47, 208, 274, 304, 397, 933 |
| GsaI | CCCAGC | 1 cut(s) | 1367 |
| HaeIII | GGCC | 4 cut(s) | 440, 712, 1170, 1773 |
| HapII | CCGG | 1 cut(s) | 743 |
| HgaI | GACGC | 5 cut(s) | 199, 272, 867, 1173, 1815 |
| HhaI | GCGC | 2 cut(s) | 224, 752 |
| Hin1I | GRCGYC | 3 cut(s) | 264, 878, 1184 |
| Hin6I | GCGC | 2 cut(s) | 222, 750 |
| HinP1I | GCGC | 2 cut(s) | 222, 750 |
| HinfI | GANTC | 8 cut(s) | 449, 509, 904, 1118, 1574, 1690, 1721, 1925 |
| HpaII | CCGG | 1 cut(s) | 743 |
| Hpy166II | GTNNAC | 4 cut(s) | 358, 520, 737, 1358 |
| Hpy8I | GTNNAC | 4 cut(s) | 358, 520, 737, 1358 |
| Hpy99I | CGWCG | 2 cut(s) | 266, 883 |
| HpyAV | CCTTC | 4 cut(s) | 460, 574, 868, 1382 |
| HpyCH4III | ACNGT | 2 cut(s) | 292, 557 |
| HpyCH4IV | ACGT | 3 cut(s) | 522, 660, 1125 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 1241, 1250, 1867 |
| HpyF3I | CTNAG | 6 cut(s) | 26, 351, 600, 1511, 1554, 1791 |
| HpySE526I | ACGT | 3 cut(s) | 522, 660, 1125 |
| Hsp92I | GRCGYC | 3 cut(s) | 264, 878, 1184 |
| HspAI | GCGC | 2 cut(s) | 222, 750 |
| Ksp22I | TGATCA | 1 cut(s) | 412 |
| Kzo9I | GATC | 6 cut(s) | 361, 412, 1415, 1480, 1697, 1780 |
| LmnI | GCTCC | 3 cut(s) | 347, 393, 1574 |
| Lsp1109I | GCAGC | 2 cut(s) | 219, 944 |
| LweI | GCATC | 2 cut(s) | 562, 1605 |
| MaeI | CTAG | 5 cut(s) | 500, 566, 942, 1478, 1862 |
| MaeII | ACGT | 3 cut(s) | 522, 660, 1125 |
| MaeIII | GTNAC | 5 cut(s) | 551, 656, 823, 1024, 1327 |
| MalI | GATC | 6 cut(s) | 363, 414, 1417, 1482, 1699, 1782 |
| MbiI | CCGCTC | 1 cut(s) | 396 |
| MboI | GATC | 6 cut(s) | 361, 412, 1415, 1480, 1697, 1780 |
| MboII | GAAGA | 5 cut(s) | 241, 475, 1334, 1337, 1919 |
| MfeI | CAATTG | 1 cut(s) | 1278 |
| MflI | RGATCY | 3 cut(s) | 1415, 1480, 1697 |
| MhlI | GDGCHC | 2 cut(s) | 739, 1360 |
| MlyI | GAGTC | 3 cut(s) | 443, 913, 1715 |
| MmeI | TCCRAC | 4 cut(s) | 162, 845, 1251, 1836 |
| Mph1103I | ATGCAT | 2 cut(s) | 841, 1620 |
| MseI | TTAA | 8 cut(s) | 5, 282, 294, 495, 894, 1011, 1145, 1500 |
| MslI | CAYNNNNRTG | 4 cut(s) | 18, 792, 1176, 1454 |
| MspA1I | CMGCKG | 2 cut(s) | 49, 910 |
| MspI | CCGG | 1 cut(s) | 743 |
| MunI | CAATTG | 1 cut(s) | 1278 |
| Mva1269I | GAATGC | 4 cut(s) | 841, 934, 1237, 1863 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 1241, 1250, 1867 |
| NcoI | CCATGG | 1 cut(s) | 1090 |
| NdeII | GATC | 6 cut(s) | 361, 412, 1415, 1480, 1697, 1780 |
| NlaIV | GGNNCC | 1 cut(s) | 1369 |
| NmuCI | GTSAC | 3 cut(s) | 823, 1024, 1327 |
| NsbI | TGCGCA | 1 cut(s) | 751 |
| NsiI | ATGCAT | 2 cut(s) | 841, 1620 |
| NspI | RCATGY | 1 cut(s) | 1042 |
| PaeI | GCATGC | 1 cut(s) | 1042 |
| PaqCI | CACCTGC | 1 cut(s) | 811 |
| PceI | AGGCCT | 1 cut(s) | 440 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 623 |
| PctI | GAATGC | 4 cut(s) | 841, 934, 1237, 1863 |
| PfeI | GAWTC | 5 cut(s) | 509, 1118, 1574, 1690, 1925 |
| PkrI | GCNGC | 7 cut(s) | 45, 48, 209, 275, 305, 398, 934 |
| Ple19I | CGATCG | 1 cut(s) | 364 |
| PleI | GAGTC | 3 cut(s) | 443, 912, 1715 |
| PpsI | GAGTC | 3 cut(s) | 443, 912, 1715 |
| Ppu21I | YACGTR | 1 cut(s) | 523 |
| PshBI | ATTAAT | 1 cut(s) | 1145 |
| PspFI | CCCAGC | 1 cut(s) | 1363 |
| PspN4I | GGNNCC | 1 cut(s) | 1369 |
| PsuI | RGATCY | 3 cut(s) | 1415, 1480, 1697 |
| PvuI | CGATCG | 1 cut(s) | 364 |
| RsaI | GTAC | 2 cut(s) | 817, 1460 |
| RsaNI | GTAC | 2 cut(s) | 816, 1459 |
| RseI | CAYNNNNRTG | 4 cut(s) | 18, 792, 1176, 1454 |
| SaqAI | TTAA | 8 cut(s) | 5, 282, 294, 495, 894, 1011, 1145, 1500 |
| SatI | GCNGC | 7 cut(s) | 44, 47, 208, 274, 304, 397, 933 |
| Sau3AI | GATC | 6 cut(s) | 361, 412, 1415, 1480, 1697, 1780 |
| SchI | GAGTC | 3 cut(s) | 443, 913, 1715 |
| SduI | GDGCHC | 2 cut(s) | 739, 1360 |
| SfaNI | GCATC | 2 cut(s) | 562, 1605 |
| SfcI | CTRYAG | 1 cut(s) | 556 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 18, 792, 1176, 1454 |
| SmlI | CTYRAG | 1 cut(s) | 1265 |
| SmoI | CTYRAG | 1 cut(s) | 1265 |
| SpeI | ACTAGT | 1 cut(s) | 941 |
| SphI | GCATGC | 1 cut(s) | 1042 |
| SseBI | AGGCCT | 1 cut(s) | 440 |
| SspI | AATATT | 1 cut(s) | 1219 |
| SspMI | CTAG | 5 cut(s) | 500, 566, 942, 1478, 1862 |
| StuI | AGGCCT | 1 cut(s) | 440 |
| StyI | CCWWGG | 2 cut(s) | 1090, 1378 |
| TaaI | ACNGT | 2 cut(s) | 292, 557 |
| TaiI | ACGT | 3 cut(s) | 525, 663, 1128 |
| TaqI | TCGA | 3 cut(s) | 408, 881, 1489 |
| TauI | GCSGC | 5 cut(s) | 46, 49, 276, 306, 399 |
| TfiI | GAWTC | 5 cut(s) | 509, 1118, 1574, 1690, 1925 |
| Tru1I | TTAA | 8 cut(s) | 5, 282, 294, 495, 894, 1011, 1145, 1500 |
| Tru9I | TTAA | 8 cut(s) | 5, 282, 294, 495, 894, 1011, 1145, 1500 |
| TscAI | CASTG | 4 cut(s) | 675, 744, 1542, 1882 |
| TseFI | GTSAC | 3 cut(s) | 823, 1024, 1327 |
| TseI | GCWGC | 2 cut(s) | 207, 932 |
| Tsp45I | GTSAC | 3 cut(s) | 823, 1024, 1327 |
| TspDTI | ATGAA | 9 cut(s) | 470, 606, 704, 1224, 1382, 1613, 1620, 1682, 1923 |
| TspGWI | ACGGA | 2 cut(s) | 470, 1869 |
| TspRI | CASTG | 4 cut(s) | 675, 744, 1542, 1882 |
| VneI | GTGCAC | 2 cut(s) | 735, 1356 |
| VspI | ATTAAT | 1 cut(s) | 1145 |
| XapI | RAATTY | 3 cut(s) | 691, 1314, 1389 |
| XceI | RCATGY | 1 cut(s) | 1042 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 352 |
| XspI | CTAG | 5 cut(s) | 500, 566, 942, 1478, 1862 |
| Zsp2I | ATGCAT | 2 cut(s) | 841, 1620 |