Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0013888

Physical Location & Seq

Genomic Coordinates Forward (+)

13150620 .. 13155626

Gene Structure 5007 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g21120.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGTCAAAGAACTGGATCCGCCATGGCTTCAACAAAGTAGCTCGTGCTGTAGGCAAAGCCAACCCAAAGAAGCAGCAAGATTTTCCAATATTGAAAGGACACCCTGCTGCACAAGGACATGCAGAAGAAGCTCTCGGAACCCATGAATCCGTCAGAAGTAGAAACAAAGCTATGAAGGAGTTCAAGATTTACAGATGGAGCCCTGACCATCCCAACCACAAGCCTTACCTCGAGTCTTACTTTGTCGACCTCGACAATTGTGGTCCTATGGTGTTGGATGCATTACAGAAGATAAAAGCAGAGAATGATTCAACCCTGAGCTATAGGAGGTCATGTAGAGAAGGAATATGTGGGTCATGTGCCATGAATATTGATGGAACCAACACTGTGGCCTGTCTCAAACCCATTGATGCAGACACTTCCACAGCCACAACTATAACTCCTCTGCCTCATATGTTTGTGATCAAAGATCTAGTTGTTGATCTCACTCATTTCTACCAGCAGTACAAGTTGATTGAGCCATGGCTAAAGACTAAAAGGCCCCCGGAGGACGGTCGGGAGTACAAGCAATCGCCTGCAGACAGGAAGAAGCTTGATGGCCGTTATGAATGTATACTTTGTGCTTGTTGTTCTACCTCATGCCCTTCCTACTGGTGGAATCCGGAGGAGTTCCTTGGACCAGCGGCATTGCTTCATGCTTATCGATGGATCGTTGACAGTCGGGATGAGTTCACGGAGGAACGATTGGAGGCATTAACAGAGGCCGAAAAGAGGTTATATAGATGCCATGTTATAAAGAATTGCACCGCCACTTGCCCCAAAAGCCTCAATCCTGCCGATGCAATACAGAAAATGAAGACCATGCATTTGCTCTCTCAGCCAGTTGAAGAGGTTGAGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000104 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006119 GO:0006121 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009055 GO:0009060 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016020 GO:0016310 GO:0016491 GO:0016627 GO:0017144 GO:0019637 GO:0019693 GO:0022900 GO:0022904 GO:0032991 GO:0034641 GO:0042773 GO:0042775 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0045273 GO:0045281 GO:0045333 GO:0046034 GO:0046483 GO:0055086 GO:0055114 GO:0070469 GO:0071704 GO:0072521 GO:0098796 GO:0098803 GO:1901135 GO:1901360 GO:1901564 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00020 ko00190 ko01100 ko01110 ko01120 ko01130 ko01200 ko04714 ko04932 ko05010 ko05012 ko05016 map00020 map00190 map01100 map01110 map01120 map01130 map01200 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Fer2_3 Fer4_17 Fer4_8

Protein Analysis

301

Amino Acids

34.28

Weight (kDa)

8.16

Isoelectric Point (pI)

59.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fer2_3	PF13085	61 - 166	4.7e-34	2Fe-2S iron-sulfur cluster binding domain
Fer4_17	PF13534	203 - 277	4.3e-10	4Fe-4S dicluster domain
Fer4_8	PF13183	203 - 275	1.1e-08	4Fe-4S dicluster domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65165 AT5G65165
fragaria_vesca	FvH4_1g21120
prunus_persica	Prupe.6G182900_v2.0.a1 Prupe.6G183100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0114901
rosa_laevigata	RLG00000018133
rosa_multiflora	Rmu_sc0002764.1_g000022
rosa_roxburghii	Rroxscaffold_2G00130430
rosa_rugosa	Rorug02G0191500 Rorug02G0191600 Rorug02G0191600
rosa_samantha	Rh2AG250200 Rh2BG259800 Rh2CG254600 Rh2DG258300
rosa_wichuraiana	Rw2G019510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	794
AccI	GTMKAC	2 cut(s)	246, 613
AccIII	TCCGGA	1 cut(s)	661
AciI	CCGC	3 cut(s)	19, 683, 807
AclWI	GGATC	3 cut(s)	10, 23, 716
AcoI	YGGCCR	1 cut(s)	598
AfaI	GTAC	2 cut(s)	506, 563
AfiI	CCNNNNNNNGG	3 cut(s)	551, 654, 771
AgsI	TTSAA	5 cut(s)	31, 94, 184, 312, 887
AluBI	AGCT	5 cut(s)	41, 131, 170, 321, 592
AluI	AGCT	5 cut(s)	41, 131, 170, 321, 592
Alw26I	GTCTC	2 cut(s)	401, 890
AlwI	GGATC	3 cut(s)	10, 23, 716
Ama87I	CYCGRG	1 cut(s)	230
Aor13HI	TCCGGA	1 cut(s)	661
AoxI	GGCC	4 cut(s)	390, 539, 598, 762
ApeKI	GCWGC	2 cut(s)	73, 107
ArsI	GACNNNNNNTTYG	2 cut(s)	850, 882
Asp700I	GAANNNNTTC	1 cut(s)	179
AspS9I	GGNCC	3 cut(s)	263, 540, 677
AsuC2I	CCSGG	1 cut(s)	545
AvaI	CYCGRG	1 cut(s)	230
AvaII	GGWCC	2 cut(s)	263, 677
BamHI	GGATCC	1 cut(s)	15
BanII	GRGCYC	1 cut(s)	203
BauI	CACGAG	1 cut(s)	42
BbsI	GAAGAC	1 cut(s)	863
BbvI	GCAGC	2 cut(s)	85, 94
BccI	CCATC	5 cut(s)	189, 216, 368, 590, 699
BceAI	ACGGC	1 cut(s)	585
BclI	TGATCA	1 cut(s)	462
BcnI	CCSGG	1 cut(s)	545
BcoDI	GTCTC	2 cut(s)	401, 890
BfaI	CTAG	1 cut(s)	473
BfmI	CTRYAG	3 cut(s)	48, 322, 576
BglII	AGATCT	1 cut(s)	469
BisI	GCNGC	3 cut(s)	74, 108, 684
BlsI	GCNGC	3 cut(s)	75, 109, 685
Bme1390I	CCNGG	1 cut(s)	545
Bme18I	GGWCC	2 cut(s)	263, 677
BmeT110I	CYCGRG	1 cut(s)	230
BmgT120I	GGNCC	3 cut(s)	263, 540, 677
BmiI	GGNNCC	5 cut(s)	17, 139, 200, 379, 542
BmrFI	CCNGG	1 cut(s)	545
BmsI	GCATC	4 cut(s)	268, 400, 773, 829
BpiI	GAAGAC	1 cut(s)	863
Bpu10I	CCTNAGC	1 cut(s)	317
BpuMI	CCSGG	1 cut(s)	545
Bsa29I	ATCGAT	1 cut(s)	703
BsaJI	CCNNGG	4 cut(s)	22, 521, 543, 673
BsaWI	WCCGGW	1 cut(s)	661
BsaXI	ACNNNNNCTCC	4 cut(s)	319, 349, 424, 454
Bsc4I	CCNNNNNNNGG	3 cut(s)	551, 654, 771
Bse1I	ACTGG	3 cut(s)	17, 656, 881
Bse3DI	GCAATG	1 cut(s)	686
BseAI	TCCGGA	1 cut(s)	661
BseCI	ATCGAT	1 cut(s)	703
BseDI	CCNNGG	4 cut(s)	22, 521, 543, 673
BseGI	GGATG	3 cut(s)	208, 283, 730
BseLI	CCNNNNNNNGG	3 cut(s)	551, 654, 771
BseMI	GCAATG	1 cut(s)	686
BseMII	CTCAG	2 cut(s)	308, 890
BseNI	ACTGG	3 cut(s)	17, 656, 881
BseRI	GAGGAG	2 cut(s)	432, 680
BseXI	GCAGC	2 cut(s)	85, 94
BsgI	GTGCAG	1 cut(s)	93
Bsh1285I	CGRYCG	1 cut(s)	556
BshFI	GGCC	4 cut(s)	392, 541, 600, 764
BshVI	ATCGAT	1 cut(s)	703
BsiEI	CGRYCG	1 cut(s)	556
BsiHKCI	CYCGRG	1 cut(s)	230
BsiSI	CCGG	2 cut(s)	545, 662
BslI	CCNNNNNNNGG	3 cut(s)	551, 654, 771
BsmAI	GTCTC	2 cut(s)	401, 890
BsnI	GGCC	4 cut(s)	392, 541, 600, 764
BsoBI	CYCGRG	1 cut(s)	230
Bsp1286I	GDGCHC	1 cut(s)	203
Bsp13I	TCCGGA	1 cut(s)	661
Bsp143I	GATC	5 cut(s)	15, 462, 469, 481, 708
Bsp19I	CCATGG	2 cut(s)	22, 521
BspACI	CCGC	3 cut(s)	19, 683, 807
BspANI	GGCC	4 cut(s)	392, 541, 600, 764
BspCNI	CTCAG	2 cut(s)	309, 889
BspDI	ATCGAT	1 cut(s)	703
BspEI	TCCGGA	1 cut(s)	661
BspLI	GGNNCC	5 cut(s)	17, 139, 200, 379, 542
BspMAI	CTGCAG	1 cut(s)	580
BspPI	GGATC	3 cut(s)	10, 23, 716
BsrDI	GCAATG	1 cut(s)	686
BsrI	ACTGG	3 cut(s)	17, 656, 881
BssECI	CCNNGG	4 cut(s)	22, 521, 543, 673
BssMI	GATC	5 cut(s)	15, 462, 469, 481, 708
BssNAI	GTATAC	1 cut(s)	614
BssSI	CACGAG	1 cut(s)	42
BssT1I	CCWWGG	3 cut(s)	22, 521, 673
Bst1107I	GTATAC	1 cut(s)	614
Bst2BI	CACGAG	1 cut(s)	42
Bst4CI	ACNGT	3 cut(s)	388, 554, 719
Bst6I	CTCTTC	1 cut(s)	882
BstC8I	GCNNGC	1 cut(s)	576
BstDEI	CTNAG	2 cut(s)	317, 876
BstDSI	CCRYGG	2 cut(s)	22, 521
BstF5I	GGATG	3 cut(s)	208, 283, 730
BstKTI	GATC	5 cut(s)	18, 465, 472, 484, 711
BstMAI	GTCTC	2 cut(s)	401, 890
BstMBI	GATC	5 cut(s)	15, 462, 469, 481, 708
BstMCI	CGRYCG	1 cut(s)	556
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 822, 877
BstNSI	RCATGY	1 cut(s)	122
BstSCI	CCNGG	1 cut(s)	543
BstSFI	CTRYAG	3 cut(s)	48, 322, 576
BstV1I	GCAGC	2 cut(s)	85, 94
BstV2I	GAAGAC	1 cut(s)	863
BstX2I	RGATCY	2 cut(s)	15, 469
BstXI	CCANNNNNNTGG	1 cut(s)	388
BstYI	RGATCY	2 cut(s)	15, 469
BstZ17I	GTATAC	1 cut(s)	614
Bsu15I	ATCGAT	1 cut(s)	703
BsuRI	GGCC	4 cut(s)	392, 541, 600, 764
BsuTUI	ATCGAT	1 cut(s)	703
BtgI	CCRYGG	2 cut(s)	22, 521
BtsCI	GGATG	3 cut(s)	208, 283, 730
BtsIMutI	CAGTG	1 cut(s)	384
Cac8I	GCNNGC	1 cut(s)	576
Cfr13I	GGNCC	3 cut(s)	263, 540, 677
ClaI	ATCGAT	1 cut(s)	703
Csp6I	GTAC	2 cut(s)	505, 562
CviQI	GTAC	2 cut(s)	505, 562
DdeI	CTNAG	2 cut(s)	317, 876
DpnI	GATC	5 cut(s)	17, 464, 471, 483, 710
DpnII	GATC	5 cut(s)	15, 462, 469, 481, 708
EaeI	YGGCCR	1 cut(s)	598
Eam1104I	CTCTTC	1 cut(s)	882
EarI	CTCTTC	1 cut(s)	882
EciI	GGCGGA	1 cut(s)	8
Eco130I	CCWWGG	3 cut(s)	22, 521, 673
Eco24I	GRGCYC	1 cut(s)	203
Eco47I	GGWCC	2 cut(s)	263, 677
Eco88I	CYCGRG	1 cut(s)	230
EcoO109I	RGGNCCY	1 cut(s)	540
EcoT14I	CCWWGG	3 cut(s)	22, 521, 673
EcoT22I	ATGCAT	2 cut(s)	283, 867
EcoT38I	GRGCYC	1 cut(s)	203
ErhI	CCWWGG	3 cut(s)	22, 521, 673
FauNDI	CATATG	1 cut(s)	453
FbaI	TGATCA	1 cut(s)	462
FblI	GTMKAC	2 cut(s)	246, 613
Fnu4HI	GCNGC	3 cut(s)	74, 108, 684
FokI	GGATG	3 cut(s)	195, 290, 737
FriOI	GRGCYC	1 cut(s)	203
Fsp4HI	GCNGC	3 cut(s)	74, 108, 684
FspBI	CTAG	1 cut(s)	473
GluI	GCNGC	3 cut(s)	74, 108, 684
HaeIII	GGCC	4 cut(s)	392, 541, 600, 764
HapII	CCGG	2 cut(s)	545, 662
HincII	GTYRAC	2 cut(s)	247, 715
HindII	GTYRAC	2 cut(s)	247, 715
HindIII	AAGCTT	1 cut(s)	590
HinfI	GANTC	4 cut(s)	146, 233, 308, 658
HpaII	CCGG	2 cut(s)	545, 662
Hpy166II	GTNNAC	4 cut(s)	247, 614, 715, 732
Hpy188I	TCNGA	2 cut(s)	137, 155
Hpy188III	TCNNGA	4 cut(s)	184, 557, 662, 722
Hpy8I	GTNNAC	4 cut(s)	247, 614, 715, 732
HpyAV	CCTTC	3 cut(s)	169, 335, 654
HpyCH4III	ACNGT	3 cut(s)	388, 554, 719
HpyCH4V	TGCA	8 cut(s)	110, 122, 281, 413, 578, 804, 842, 865
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 822, 877
HpyF3I	CTNAG	2 cut(s)	317, 876
Kpn2I	TCCGGA	1 cut(s)	661
Ksp22I	TGATCA	1 cut(s)	462
Kzo9I	GATC	5 cut(s)	15, 462, 469, 481, 708
LmnI	GCTCC	1 cut(s)	198
Lsp1109I	GCAGC	2 cut(s)	85, 94
LweI	GCATC	4 cut(s)	268, 400, 773, 829
MaeI	CTAG	1 cut(s)	473
MalI	GATC	5 cut(s)	17, 464, 471, 483, 710
MboI	GATC	5 cut(s)	15, 462, 469, 481, 708
MboII	GAAGA	5 cut(s)	137, 301, 598, 868, 899
MfeI	CAATTG	1 cut(s)	256
MflI	RGATCY	2 cut(s)	15, 469
MhlI	GDGCHC	1 cut(s)	203
MluCI	AATT	2 cut(s)	256, 799
MlyI	GAGTC	1 cut(s)	242
MmeI	TCCRAC	1 cut(s)	255
Mph1103I	ATGCAT	2 cut(s)	283, 867
MroI	TCCGGA	1 cut(s)	661
MroXI	GAANNNNTTC	1 cut(s)	179
MseI	TTAA	1 cut(s)	755
MspA1I	CMGCKG	1 cut(s)	683
MspI	CCGG	2 cut(s)	545, 662
MspR9I	CCNGG	1 cut(s)	545
MunI	CAATTG	1 cut(s)	256
MwoI	GCNNNNNNNGC	3 cut(s)	128, 822, 877
NciI	CCSGG	1 cut(s)	545
NcoI	CCATGG	2 cut(s)	22, 521
NdeI	CATATG	1 cut(s)	453
NdeII	GATC	5 cut(s)	15, 462, 469, 481, 708
NlaIV	GGNNCC	5 cut(s)	17, 139, 200, 379, 542
NsiI	ATGCAT	2 cut(s)	283, 867
NspI	RCATGY	1 cut(s)	122
PaeR7I	CTCGAG	1 cut(s)	230
PdmI	GAANNNNTTC	1 cut(s)	179
PfeI	GAWTC	3 cut(s)	146, 308, 658
PkrI	GCNGC	3 cut(s)	75, 109, 685
PleI	GAGTC	1 cut(s)	241
PpsI	GAGTC	1 cut(s)	241
PsiI	TTATAA	1 cut(s)	794
PspN4I	GGNNCC	5 cut(s)	17, 139, 200, 379, 542
PspPI	GGNCC	3 cut(s)	263, 540, 677
PspXI	VCTCGAGB	1 cut(s)	230
PstI	CTGCAG	1 cut(s)	580
PsuI	RGATCY	2 cut(s)	15, 469
RsaI	GTAC	2 cut(s)	506, 563
RsaNI	GTAC	2 cut(s)	505, 562
SalI	GTCGAC	1 cut(s)	245
SaqAI	TTAA	1 cut(s)	755
SatI	GCNGC	3 cut(s)	74, 108, 684
Sau3AI	GATC	5 cut(s)	15, 462, 469, 481, 708
Sau96I	GGNCC	3 cut(s)	263, 540, 677
SchI	GAGTC	1 cut(s)	242
ScrFI	CCNGG	1 cut(s)	545
SduI	GDGCHC	1 cut(s)	203
SfaNI	GCATC	4 cut(s)	268, 400, 773, 829
SfcI	CTRYAG	3 cut(s)	48, 322, 576
Sfr274I	CTCGAG	1 cut(s)	230
SinI	GGWCC	2 cut(s)	263, 677
SlaI	CTCGAG	1 cut(s)	230
SmlI	CTYRAG	1 cut(s)	230
SmoI	CTYRAG	1 cut(s)	230
Sse9I	AATT	2 cut(s)	256, 799
SsiI	CCGC	3 cut(s)	19, 683, 807
SspI	AATATT	2 cut(s)	90, 370
SspMI	CTAG	1 cut(s)	473
StyD4I	CCNGG	1 cut(s)	543
StyI	CCWWGG	3 cut(s)	22, 521, 673
TaaI	ACNGT	3 cut(s)	388, 554, 719
TaqI	TCGA	4 cut(s)	231, 246, 252, 703
TasI	AATT	2 cut(s)	256, 799
TatI	WGTACW	2 cut(s)	504, 561
TauI	GCSGC	1 cut(s)	686
TfiI	GAWTC	3 cut(s)	146, 308, 658
Tru1I	TTAA	1 cut(s)	755
Tru9I	TTAA	1 cut(s)	755
TscAI	CASTG	1 cut(s)	391
TseI	GCWGC	2 cut(s)	73, 107
TspDTI	ATGAA	6 cut(s)	159, 188, 380, 621, 683, 869
TspGWI	ACGGA	2 cut(s)	139, 749
TspRI	CASTG	1 cut(s)	391
VpaK11BI	GGWCC	2 cut(s)	263, 677
XceI	RCATGY	1 cut(s)	122
XhoI	CTCGAG	1 cut(s)	230
XmiI	GTMKAC	2 cut(s)	246, 613
XmnI	GAANNNNTTC	1 cut(s)	179
XspI	CTAG	1 cut(s)	473
Zsp2I	ATGCAT	2 cut(s)	283, 867

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.