Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0013888

Physical Location & Seq

Genomic Coordinates Forward (+)

66561023 .. 66563513

Gene Structure 2491 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00130430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGTCGATCATTTCTGCAGTCGCCTGGATCATTTGCAATACTTGAGAGAGAGAGAGAGAGAGGTAACCGAGATGTCAAAGAGCTGGATCCGTCATGGCTACAACAAAGTAGCTCGAGCTGTAGGCAAAGCCGACCCAAAGCAGCTAGACTTTCCAATATTGAAAGGACACCCTGCTGCACAAGTACATGCAGAAGAAGCTCTTGAGACCCATGAAACTGTCAGAAGCAGAAACAAAGTTCTAAAGGAGTTCAAGATTTACAGATGGAGCCCCGACCATCCCGACAACAAGCCTTACCTCAAGTCTTACTTTGTGAACCTCAACAACTGTGGTCCAATGGTTTTGGATGCATTACAGAAGATAAAAGCAGAGGATGATTCAACCCTGAGCTATCGGAGGTCATGCAGAGAAGGAATATGTGGGTCATGTGCCATGAATATTGATGGAACCAACACCGTGGCCTGTCTCAGACCCATTGATGCAGACACTTCAACAGCCACAACTATAACTCCGCTGCCTCATATGTTTGTGATCAAAGATCTAGTTGTTGATCTCACTAATTTCTACCAGCAGTACAAGTTGATTGAACCATGGCTGAAGACTAAAAAGCCCTCGGAGGATGGTCGGGAGTACAAGCAATCGCCTGCAGACCGGAAGAAGCTTGACGGGCTTTATGAATGTATACTTTGTGCTTGTTGTTCTACCTCATGCCCTTCCTACTGGTGGAATCCGGAGGAGTTCCTTGGACCAGCGGCTTTGCTCCATGCTTATCGATGGATATCTGACAGTCGGGATCAGTCCACAGAGAAGCGATTGCAGTCATTAACAGAGGACCAGAAGAGGCTATATAGATGCAACATTATAAAGAATTGCACTGCCACTTGCCCCAAAAGCCTCAATCCTGCCGATGCCATACAGAAAATGAAAACCAAGCATTTGTTCTCTCCGCCTGTTGAAGTGGTCGGGAGCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000104 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006119 GO:0006121 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009055 GO:0009060 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016020 GO:0016310 GO:0016491 GO:0016627 GO:0017144 GO:0019637 GO:0019693 GO:0022900 GO:0022904 GO:0032991 GO:0034641 GO:0042773 GO:0042775 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0045273 GO:0045281 GO:0045333 GO:0046034 GO:0046483 GO:0055086 GO:0055114 GO:0070469 GO:0071704 GO:0072521 GO:0098796 GO:0098803 GO:1901135 GO:1901360 GO:1901564 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00020 ko00190 ko01100 ko01110 ko01120 ko01130 ko01200 ko04714 ko04932 ko05010 ko05012 ko05016 map00020 map00190 map01100 map01110 map01120 map01130 map01200 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Fer2_3 Fer4_17 Fer4_8

Protein Analysis

324

Amino Acids

37.2

Weight (kDa)

8.55

Isoelectric Point (pI)

57.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fer2_3	PF13085	84 - 189	4.1e-33	2Fe-2S iron-sulfur cluster binding domain
Fer4_8	PF13183	224 - 298	4.1e-09	4Fe-4S dicluster domain
Fer4_17	PF13534	226 - 300	3.6e-09	4Fe-4S dicluster domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65165 AT5G65165
fragaria_vesca	FvH4_1g21120
prunus_persica	Prupe.6G182900_v2.0.a1 Prupe.6G183100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0114901
rosa_laevigata	RLG00000018133
rosa_multiflora	Rmu_sc0002764.1_g000022
rosa_roxburghii	Rroxscaffold_2G00130430
rosa_rugosa	Rorug02G0191500 Rorug02G0191600 Rorug02G0191600
rosa_samantha	Rh2AG250200 Rh2BG259800 Rh2CG254600 Rh2DG258300
rosa_wichuraiana	Rw2G019510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	863
AccI	GTMKAC	1 cut(s)	682
AccIII	TCCGGA	1 cut(s)	730
AciI	CCGC	3 cut(s)	512, 752, 947
AclWI	GGATC	4 cut(s)	36, 82, 95, 801
AcuI	CTGAAG	1 cut(s)	617
AfaI	GTAC	3 cut(s)	186, 575, 632
AfiI	CCNNNNNNNGG	1 cut(s)	723
AgsI	TTSAA	6 cut(s)	163, 253, 381, 492, 587, 956
AjnI	CCWGG	1 cut(s)	24
AjuI	GAANNNNNNNTTGG	2 cut(s)	923, 955
AluBI	AGCT	7 cut(s)	84, 113, 119, 145, 200, 390, 661
AluI	AGCT	7 cut(s)	84, 113, 119, 145, 200, 390, 661
Alw26I	GTCTC	2 cut(s)	200, 470
AlwI	GGATC	4 cut(s)	36, 82, 95, 801
Ama87I	CYCGRG	1 cut(s)	114
Aor13HI	TCCGGA	1 cut(s)	730
AoxI	GGCC	1 cut(s)	459
ApeKI	GCWGC	3 cut(s)	142, 176, 514
AspS9I	GGNCC	3 cut(s)	332, 746, 832
AvaI	CYCGRG	1 cut(s)	114
AvaII	GGWCC	3 cut(s)	332, 746, 832
BamHI	GGATCC	1 cut(s)	87
BanII	GRGCYC	1 cut(s)	272
BbsI	GAAGAC	1 cut(s)	605
BbvI	GCAGC	3 cut(s)	154, 163, 501
BccI	CCATC	5 cut(s)	258, 285, 437, 614, 768
BciT130I	CCWGG	1 cut(s)	26
BclI	TGATCA	1 cut(s)	531
BcoDI	GTCTC	2 cut(s)	200, 470
BfaI	CTAG	2 cut(s)	146, 542
BfmI	CTRYAG	3 cut(s)	16, 120, 645
BglII	AGATCT	1 cut(s)	538
BisI	GCNGC	4 cut(s)	143, 177, 515, 753
BlsI	GCNGC	4 cut(s)	144, 178, 516, 754
Bme1390I	CCNGG	1 cut(s)	26
Bme18I	GGWCC	3 cut(s)	332, 746, 832
BmeT110I	CYCGRG	1 cut(s)	114
BmgT120I	GGNCC	3 cut(s)	332, 746, 832
BmiI	GGNNCC	3 cut(s)	89, 269, 448
BmrFI	CCNGG	1 cut(s)	26
BmsI	GCATC	4 cut(s)	337, 469, 842, 898
BpiI	GAAGAC	1 cut(s)	605
Bpu10I	CCTNAGC	1 cut(s)	386
BpuEI	CTTGAG	3 cut(s)	64, 224, 284
Bsa29I	ATCGAT	1 cut(s)	772
BsaBI	GATNNNNATC	1 cut(s)	778
BsaI	GGTCTC	1 cut(s)	200
BsaJI	CCNNGG	4 cut(s)	456, 590, 612, 742
BsaWI	WCCGGW	2 cut(s)	651, 730
BsaXI	ACNNNNNCTCC	2 cut(s)	493, 523
Bsc4I	CCNNNNNNNGG	1 cut(s)	723
Bse1I	ACTGG	1 cut(s)	725
Bse8I	GATNNNNATC	1 cut(s)	778
BseAI	TCCGGA	1 cut(s)	730
BseBI	CCWGG	1 cut(s)	26
BseCI	ATCGAT	1 cut(s)	772
BseDI	CCNNGG	4 cut(s)	456, 590, 612, 742
BseGI	GGATG	4 cut(s)	277, 352, 379, 625
BseJI	GATNNNNATC	1 cut(s)	778
BseLI	CCNNNNNNNGG	1 cut(s)	723
BseMII	CTCAG	2 cut(s)	377, 481
BseNI	ACTGG	1 cut(s)	725
BseRI	GAGGAG	1 cut(s)	749
BseXI	GCAGC	3 cut(s)	154, 163, 501
BsgI	GTGCAG	1 cut(s)	162
BshFI	GGCC	1 cut(s)	461
BshVI	ATCGAT	1 cut(s)	772
BsiHKCI	CYCGRG	1 cut(s)	114
BsiSI	CCGG	2 cut(s)	652, 731
BslI	CCNNNNNNNGG	1 cut(s)	723
BsmAI	GTCTC	2 cut(s)	200, 470
BsnI	GGCC	1 cut(s)	461
Bso31I	GGTCTC	1 cut(s)	200
BsoBI	CYCGRG	1 cut(s)	114
Bsp1286I	GDGCHC	1 cut(s)	272
Bsp13I	TCCGGA	1 cut(s)	730
Bsp143I	GATC	7 cut(s)	7, 28, 87, 531, 538, 550, 793
Bsp19I	CCATGG	1 cut(s)	590
BspACI	CCGC	3 cut(s)	512, 752, 947
BspANI	GGCC	1 cut(s)	461
BspCNI	CTCAG	2 cut(s)	378, 480
BspDI	ATCGAT	1 cut(s)	772
BspEI	TCCGGA	1 cut(s)	730
BspLI	GGNNCC	3 cut(s)	89, 269, 448
BspMAI	CTGCAG	2 cut(s)	20, 649
BspPI	GGATC	4 cut(s)	36, 82, 95, 801
BspTNI	GGTCTC	1 cut(s)	200
BsrI	ACTGG	1 cut(s)	725
BssECI	CCNNGG	4 cut(s)	456, 590, 612, 742
BssMI	GATC	7 cut(s)	7, 28, 87, 531, 538, 550, 793
BssNAI	GTATAC	1 cut(s)	683
BssT1I	CCWWGG	2 cut(s)	590, 742
Bst1107I	GTATAC	1 cut(s)	683
Bst2UI	CCWGG	1 cut(s)	26
Bst4CI	ACNGT	4 cut(s)	220, 329, 457, 788
Bst6I	CTCTTC	1 cut(s)	833
BstC8I	GCNNGC	1 cut(s)	645
BstDEI	CTNAG	2 cut(s)	386, 467
BstDSI	CCRYGG	2 cut(s)	456, 590
BstEII	GGTNACC	1 cut(s)	64
BstF5I	GGATG	4 cut(s)	277, 352, 379, 625
BstKTI	GATC	7 cut(s)	10, 31, 90, 534, 541, 553, 796
BstMAI	GTCTC	2 cut(s)	200, 470
BstMBI	GATC	7 cut(s)	7, 28, 87, 531, 538, 550, 793
BstMWI	GCNNNNNNNGC	3 cut(s)	197, 667, 891
BstNI	CCWGG	1 cut(s)	26
BstNSI	RCATGY	2 cut(s)	191, 973
BstPI	GGTNACC	1 cut(s)	64
BstSCI	CCNGG	1 cut(s)	24
BstSFI	CTRYAG	3 cut(s)	16, 120, 645
BstV1I	GCAGC	3 cut(s)	154, 163, 501
BstV2I	GAAGAC	1 cut(s)	605
BstX2I	RGATCY	2 cut(s)	87, 538
BstXI	CCANNNNNNTGG	1 cut(s)	457
BstYI	RGATCY	2 cut(s)	87, 538
BstZ17I	GTATAC	1 cut(s)	683
Bsu15I	ATCGAT	1 cut(s)	772
BsuRI	GGCC	1 cut(s)	461
BsuTUI	ATCGAT	1 cut(s)	772
BtgI	CCRYGG	2 cut(s)	456, 590
BtsCI	GGATG	4 cut(s)	277, 352, 379, 625
BtsI	GCAGTG	1 cut(s)	873
BtsIMutI	CAGTG	1 cut(s)	873
Cac8I	GCNNGC	1 cut(s)	645
Cfr13I	GGNCC	3 cut(s)	332, 746, 832
ClaI	ATCGAT	1 cut(s)	772
Csp6I	GTAC	3 cut(s)	185, 574, 631
CspCI	CAANNNNNGTGG	2 cut(s)	310, 345
CviQI	GTAC	3 cut(s)	185, 574, 631
DdeI	CTNAG	2 cut(s)	386, 467
DpnI	GATC	7 cut(s)	9, 30, 89, 533, 540, 552, 795
DpnII	GATC	7 cut(s)	7, 28, 87, 531, 538, 550, 793
Eam1104I	CTCTTC	1 cut(s)	833
EarI	CTCTTC	1 cut(s)	833
EciI	GGCGGA	1 cut(s)	936
Eco130I	CCWWGG	2 cut(s)	590, 742
Eco24I	GRGCYC	1 cut(s)	272
Eco31I	GGTCTC	1 cut(s)	200
Eco32I	GATATC	1 cut(s)	780
Eco47I	GGWCC	3 cut(s)	332, 746, 832
Eco57I	CTGAAG	1 cut(s)	617
Eco88I	CYCGRG	1 cut(s)	114
Eco91I	GGTNACC	1 cut(s)	64
EcoO65I	GGTNACC	1 cut(s)	64
EcoRII	CCWGG	1 cut(s)	24
EcoRV	GATATC	1 cut(s)	780
EcoT14I	CCWWGG	2 cut(s)	590, 742
EcoT22I	ATGCAT	1 cut(s)	352
EcoT38I	GRGCYC	1 cut(s)	272
ErhI	CCWWGG	2 cut(s)	590, 742
FalI	AAGNNNNNCTT	4 cut(s)	186, 218, 293, 325
FauNDI	CATATG	1 cut(s)	522
FbaI	TGATCA	1 cut(s)	531
FblI	GTMKAC	1 cut(s)	682
Fnu4HI	GCNGC	4 cut(s)	143, 177, 515, 753
FokI	GGATG	4 cut(s)	264, 359, 386, 632
FriOI	GRGCYC	1 cut(s)	272
Fsp4HI	GCNGC	4 cut(s)	143, 177, 515, 753
FspBI	CTAG	2 cut(s)	146, 542
GluI	GCNGC	4 cut(s)	143, 177, 515, 753
HaeIII	GGCC	1 cut(s)	461
HapII	CCGG	2 cut(s)	652, 731
HindIII	AAGCTT	1 cut(s)	659
HinfI	GANTC	2 cut(s)	377, 727
HpaII	CCGG	2 cut(s)	652, 731
Hpy166II	GTNNAC	3 cut(s)	316, 683, 801
Hpy188I	TCNGA	5 cut(s)	224, 396, 470, 616, 784
Hpy188III	TCNNGA	7 cut(s)	203, 253, 281, 626, 731, 791, 964
Hpy8I	GTNNAC	3 cut(s)	316, 683, 801
HpyAV	CCTTC	2 cut(s)	404, 723
HpyCH4III	ACNGT	4 cut(s)	220, 329, 457, 788
HpyF10VI	GCNNNNNNNGC	3 cut(s)	197, 667, 891
HpyF3I	CTNAG	2 cut(s)	386, 467
Kpn2I	TCCGGA	1 cut(s)	730
Ksp22I	TGATCA	1 cut(s)	531
Kzo9I	GATC	7 cut(s)	7, 28, 87, 531, 538, 550, 793
LmnI	GCTCC	3 cut(s)	267, 765, 966
Lsp1109I	GCAGC	3 cut(s)	154, 163, 501
LweI	GCATC	4 cut(s)	337, 469, 842, 898
MaeI	CTAG	2 cut(s)	146, 542
MaeIII	GTNAC	1 cut(s)	64
MalI	GATC	7 cut(s)	9, 30, 89, 533, 540, 552, 795
MboI	GATC	7 cut(s)	7, 28, 87, 531, 538, 550, 793
MboII	GAAGA	5 cut(s)	206, 370, 610, 667, 850
MflI	RGATCY	2 cut(s)	87, 538
MhlI	GDGCHC	1 cut(s)	272
MluCI	AATT	2 cut(s)	559, 868
Mph1103I	ATGCAT	1 cut(s)	352
MroI	TCCGGA	1 cut(s)	730
MseI	TTAA	1 cut(s)	824
MspA1I	CMGCKG	2 cut(s)	514, 752
MspI	CCGG	2 cut(s)	652, 731
MspR9I	CCNGG	1 cut(s)	26
MvaI	CCWGG	1 cut(s)	26
MwoI	GCNNNNNNNGC	3 cut(s)	197, 667, 891
NcoI	CCATGG	1 cut(s)	590
NdeI	CATATG	1 cut(s)	522
NdeII	GATC	7 cut(s)	7, 28, 87, 531, 538, 550, 793
NlaIV	GGNNCC	3 cut(s)	89, 269, 448
NsiI	ATGCAT	1 cut(s)	352
NspI	RCATGY	2 cut(s)	191, 973
PaeR7I	CTCGAG	1 cut(s)	114
PfeI	GAWTC	2 cut(s)	377, 727
PkrI	GCNGC	4 cut(s)	144, 178, 516, 754
PsiI	TTATAA	1 cut(s)	863
Psp6I	CCWGG	1 cut(s)	24
PspEI	GGTNACC	1 cut(s)	64
PspGI	CCWGG	1 cut(s)	24
PspN4I	GGNNCC	3 cut(s)	89, 269, 448
PspPI	GGNCC	3 cut(s)	332, 746, 832
PspXI	VCTCGAGB	1 cut(s)	114
PstI	CTGCAG	2 cut(s)	20, 649
PsuI	RGATCY	2 cut(s)	87, 538
RsaI	GTAC	3 cut(s)	186, 575, 632
RsaNI	GTAC	3 cut(s)	185, 574, 631
SaqAI	TTAA	1 cut(s)	824
SatI	GCNGC	4 cut(s)	143, 177, 515, 753
Sau3AI	GATC	7 cut(s)	7, 28, 87, 531, 538, 550, 793
Sau96I	GGNCC	3 cut(s)	332, 746, 832
ScrFI	CCNGG	1 cut(s)	26
SduI	GDGCHC	1 cut(s)	272
SfaNI	GCATC	4 cut(s)	337, 469, 842, 898
SfcI	CTRYAG	3 cut(s)	16, 120, 645
Sfr274I	CTCGAG	1 cut(s)	114
SinI	GGWCC	3 cut(s)	332, 746, 832
SlaI	CTCGAG	1 cut(s)	114
SmlI	CTYRAG	4 cut(s)	43, 114, 203, 299
SmoI	CTYRAG	4 cut(s)	43, 114, 203, 299
Sse9I	AATT	2 cut(s)	559, 868
SsiI	CCGC	3 cut(s)	512, 752, 947
SspI	AATATT	2 cut(s)	159, 439
SspMI	CTAG	2 cut(s)	146, 542
StyD4I	CCNGG	1 cut(s)	24
StyI	CCWWGG	2 cut(s)	590, 742
TaaI	ACNGT	4 cut(s)	220, 329, 457, 788
TaqI	TCGA	3 cut(s)	6, 115, 772
TasI	AATT	2 cut(s)	559, 868
TatI	WGTACW	3 cut(s)	184, 573, 630
TauI	GCSGC	1 cut(s)	755
TfiI	GAWTC	2 cut(s)	377, 727
Tru1I	TTAA	1 cut(s)	824
Tru9I	TTAA	1 cut(s)	824
TscAI	CASTG	1 cut(s)	880
TseI	GCWGC	3 cut(s)	142, 176, 514
TspDTI	ATGAA	4 cut(s)	228, 449, 690, 938
TspGWI	ACGGA	1 cut(s)	80
TspRI	CASTG	1 cut(s)	880
VpaK11BI	GGWCC	3 cut(s)	332, 746, 832
XceI	RCATGY	2 cut(s)	191, 973
XhoI	CTCGAG	1 cut(s)	114
XmiI	GTMKAC	1 cut(s)	682
XspI	CTAG	2 cut(s)	146, 542
Zsp2I	ATGCAT	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.