Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0013888

Physical Location & Seq

Genomic Coordinates Forward (+)

25920445 .. 25925884

Gene Structure 5440 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G019510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGTCAAAGAGCTGGATCCGCCATGGCTACAACAAAGTAGCTCGAGCTGTAGGCAAAGCGGACCCAAAGAAGCAGCAAGACTTTCCAATATTGAAAGGACACCCTGCTGCACAAGTACATGCAGAAGAGGCTTTTGAGACCCATGAAACTGTCAGAAGCAGAAACAAAGTTCTAACGGAGTTCAAGATTTACAGATGGAGCCCCGACCATCCCGACAACAAGCCTTACCTCAAGTCTTACTTTGTGAACCTCAACAACTGTGGTCCAATGGTTTTGGATGCACTACAGAGGATAAAAGCAGAGGATGATTCAACCCTGAGCTATAGGAGGTCATGCAGAGAAGGAATATGTGGGTCATGTGCCATGAATATTGATGGAACCGGCCAACACCGTGGCCTGTCTCAGACCCATGATGCAGACACTTCAACAGCCACAACTATAACTCCGCTGCCTCATATGTTTGTGATCAAAGATCTAGTTGTTGATCTCACTAATTTCTACCTGCAGTACAAGTTGATTGAACCATGGCTGAAGACTAAAAAGGCCCCGGAGGATGGTCGGGAGTACAAGCAATCGCCTGCAGACTGGAAGAAGCTTGATGGGCTTTATGAATCTATACTTTGTGCTTGTTGTTCTACCTCATGCCCTTCCTACTGGTGGAATCCGGAGGAGTTCCTTGGACCAGCGGCTTTGCTCCATGCTTATCGATGGATATCTGACAGTCGGGATCAGTCCACAGAGGAGCTATTGCAGTCATTAACAGAGGACCAGAAGAGGCTATATAGATGCAACATTATAAAGAATTGCACTGCCACGTGCCCCAAAAGCCTCAATCCTGCCGATGCCATACAGAAAATGAAAACCAAGCATTTGTTCTCTCAGCCTGTTGAAGTGGTCGGGAGCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000104 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006119 GO:0006121 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009055 GO:0009060 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016020 GO:0016310 GO:0016491 GO:0016627 GO:0017144 GO:0019637 GO:0019693 GO:0022900 GO:0022904 GO:0032991 GO:0034641 GO:0042773 GO:0042775 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0045273 GO:0045281 GO:0045333 GO:0046034 GO:0046483 GO:0055086 GO:0055114 GO:0070469 GO:0071704 GO:0072521 GO:0098796 GO:0098803 GO:1901135 GO:1901360 GO:1901564 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00020 ko00190 ko01100 ko01110 ko01120 ko01130 ko01200 ko04714 ko04932 ko05010 ko05012 ko05016 map00020 map00190 map01100 map01110 map01120 map01130 map01200 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Fer2_3 Fer4_17 Fer4_8

Protein Analysis

302

Amino Acids

34.43

Weight (kDa)

8.39

Isoelectric Point (pI)

58.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fer2_3	PF13085	61 - 166	5.9e-29	2Fe-2S iron-sulfur cluster binding domain
Fer4_8	PF13183	206 - 276	5.1e-07	4Fe-4S dicluster domain
Fer4_17	PF13534	207 - 278	5e-08	4Fe-4S dicluster domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65165 AT5G65165
fragaria_vesca	FvH4_1g21120
prunus_persica	Prupe.6G182900_v2.0.a1 Prupe.6G183100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0114901
rosa_laevigata	RLG00000018133
rosa_multiflora	Rmu_sc0002764.1_g000022
rosa_roxburghii	Rroxscaffold_2G00130430
rosa_rugosa	Rorug02G0191500 Rorug02G0191600 Rorug02G0191600
rosa_samantha	Rh2AG250200 Rh2BG259800 Rh2CG254600 Rh2DG258300
rosa_wichuraiana	Rw2G019510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	797
Acc36I	ACCTGC	1 cut(s)	510
AccIII	TCCGGA	1 cut(s)	664
AciI	CCGC	4 cut(s)	19, 59, 446, 686
AclWI	GGATC	3 cut(s)	10, 23, 735
AcoI	YGGCCR	1 cut(s)	382
AcuI	CTGAAG	1 cut(s)	551
AcvI	CACGTG	1 cut(s)	816
AfaI	GTAC	3 cut(s)	117, 509, 566
AfiI	CCNNNNNNNGG	2 cut(s)	554, 657
AgsI	TTSAA	6 cut(s)	94, 184, 312, 426, 521, 890
AjuI	GAANNNNNNNTTGG	2 cut(s)	857, 889
AluBI	AGCT	6 cut(s)	12, 41, 47, 321, 595, 745
AluI	AGCT	6 cut(s)	12, 41, 47, 321, 595, 745
Alw26I	GTCTC	2 cut(s)	131, 405
AlwI	GGATC	3 cut(s)	10, 23, 735
Ama87I	CYCGRG	1 cut(s)	42
Aor13HI	TCCGGA	1 cut(s)	664
AoxI	GGCC	3 cut(s)	382, 394, 543
ApeKI	GCWGC	3 cut(s)	73, 107, 448
AspS9I	GGNCC	5 cut(s)	61, 263, 544, 680, 766
AsuC2I	CCSGG	1 cut(s)	548
AvaI	CYCGRG	1 cut(s)	42
AvaII	GGWCC	4 cut(s)	61, 263, 680, 766
BaeGI	GKGCMC	1 cut(s)	821
BamHI	GGATCC	1 cut(s)	15
BanII	GRGCYC	1 cut(s)	203
BbrPI	CACGTG	1 cut(s)	816
BbsI	GAAGAC	1 cut(s)	539
BbvI	GCAGC	3 cut(s)	85, 94, 435
BccI	CCATC	6 cut(s)	189, 216, 368, 548, 593, 702
BclI	TGATCA	1 cut(s)	465
BcnI	CCSGG	1 cut(s)	548
BcoDI	GTCTC	2 cut(s)	131, 405
BfaI	CTAG	1 cut(s)	476
BfmI	CTRYAG	5 cut(s)	48, 284, 322, 503, 579
BfuAI	ACCTGC	1 cut(s)	510
BglII	AGATCT	1 cut(s)	472
BisI	GCNGC	4 cut(s)	74, 108, 449, 687
BlsI	GCNGC	4 cut(s)	75, 109, 450, 688
Bme1390I	CCNGG	1 cut(s)	548
Bme18I	GGWCC	4 cut(s)	61, 263, 680, 766
BmeT110I	CYCGRG	1 cut(s)	42
BmgT120I	GGNCC	5 cut(s)	61, 263, 544, 680, 766
BmiI	GGNNCC	5 cut(s)	17, 63, 200, 379, 546
BmrFI	CCNGG	1 cut(s)	548
BmsI	GCATC	4 cut(s)	268, 403, 776, 832
BpiI	GAAGAC	1 cut(s)	539
Bpu10I	CCTNAGC	1 cut(s)	317
BpuEI	CTTGAG	1 cut(s)	215
BpuMI	CCSGG	1 cut(s)	548
Bsa29I	ATCGAT	1 cut(s)	706
BsaAI	YACGTR	1 cut(s)	816
BsaBI	GATNNNNATC	1 cut(s)	712
BsaI	GGTCTC	1 cut(s)	131
BsaJI	CCNNGG	5 cut(s)	22, 391, 524, 546, 676
BsaWI	WCCGGW	1 cut(s)	664
BsaXI	ACNNNNNCTCC	2 cut(s)	427, 457
Bsc4I	CCNNNNNNNGG	2 cut(s)	554, 657
Bse118I	RCCGGY	1 cut(s)	380
Bse1I	ACTGG	2 cut(s)	590, 659
Bse8I	GATNNNNATC	1 cut(s)	712
BseAI	TCCGGA	1 cut(s)	664
BseCI	ATCGAT	1 cut(s)	706
BseDI	CCNNGG	5 cut(s)	22, 391, 524, 546, 676
BseGI	GGATG	4 cut(s)	208, 283, 310, 559
BseJI	GATNNNNATC	1 cut(s)	712
BseLI	CCNNNNNNNGG	2 cut(s)	554, 657
BseMII	CTCAG	3 cut(s)	308, 416, 893
BseNI	ACTGG	2 cut(s)	590, 659
BseRI	GAGGAG	2 cut(s)	683, 755
BseSI	GKGCMC	1 cut(s)	821
BseXI	GCAGC	3 cut(s)	85, 94, 435
BsgI	GTGCAG	1 cut(s)	93
BshFI	GGCC	3 cut(s)	384, 396, 545
BshVI	ATCGAT	1 cut(s)	706
BsiHKCI	CYCGRG	1 cut(s)	42
BsiSI	CCGG	3 cut(s)	381, 548, 665
BslI	CCNNNNNNNGG	2 cut(s)	554, 657
BsmAI	GTCTC	2 cut(s)	131, 405
BsnI	GGCC	3 cut(s)	384, 396, 545
Bso31I	GGTCTC	1 cut(s)	131
BsoBI	CYCGRG	1 cut(s)	42
Bsp1286I	GDGCHC	2 cut(s)	203, 821
Bsp13I	TCCGGA	1 cut(s)	664
Bsp143I	GATC	5 cut(s)	15, 465, 472, 484, 727
Bsp19I	CCATGG	2 cut(s)	22, 524
BspACI	CCGC	4 cut(s)	19, 59, 446, 686
BspANI	GGCC	3 cut(s)	384, 396, 545
BspCNI	CTCAG	3 cut(s)	309, 415, 892
BspDI	ATCGAT	1 cut(s)	706
BspEI	TCCGGA	1 cut(s)	664
BspLI	GGNNCC	5 cut(s)	17, 63, 200, 379, 546
BspMAI	CTGCAG	2 cut(s)	507, 583
BspMI	ACCTGC	1 cut(s)	510
BspPI	GGATC	3 cut(s)	10, 23, 735
BspTNI	GGTCTC	1 cut(s)	131
BsrFI	RCCGGY	1 cut(s)	380
BsrI	ACTGG	2 cut(s)	590, 659
BssAI	RCCGGY	1 cut(s)	380
BssECI	CCNNGG	5 cut(s)	22, 391, 524, 546, 676
BssMI	GATC	5 cut(s)	15, 465, 472, 484, 727
BssT1I	CCWWGG	3 cut(s)	22, 524, 676
Bst4CI	ACNGT	4 cut(s)	151, 260, 392, 722
Bst6I	CTCTTC	2 cut(s)	120, 767
BstBAI	YACGTR	1 cut(s)	816
BstC8I	GCNNGC	1 cut(s)	579
BstDEI	CTNAG	3 cut(s)	317, 402, 879
BstDSI	CCRYGG	3 cut(s)	22, 391, 524
BstF5I	GGATG	4 cut(s)	208, 283, 310, 559
BstKTI	GATC	5 cut(s)	18, 468, 475, 487, 730
BstMAI	GTCTC	2 cut(s)	131, 405
BstMBI	GATC	5 cut(s)	15, 465, 472, 484, 727
BstMWI	GCNNNNNNNGC	4 cut(s)	18, 128, 601, 825
BstNSI	RCATGY	2 cut(s)	122, 907
BstSCI	CCNGG	1 cut(s)	546
BstSFI	CTRYAG	5 cut(s)	48, 284, 322, 503, 579
BstSLI	GKGCMC	1 cut(s)	821
BstV1I	GCAGC	3 cut(s)	85, 94, 435
BstV2I	GAAGAC	1 cut(s)	539
BstX2I	RGATCY	2 cut(s)	15, 472
BstXI	CCANNNNNNTGG	1 cut(s)	392
BstYI	RGATCY	2 cut(s)	15, 472
Bsu15I	ATCGAT	1 cut(s)	706
BsuRI	GGCC	3 cut(s)	384, 396, 545
BsuTUI	ATCGAT	1 cut(s)	706
BtgI	CCRYGG	3 cut(s)	22, 391, 524
BtsCI	GGATG	4 cut(s)	208, 283, 310, 559
BtsI	GCAGTG	1 cut(s)	807
BtsIMutI	CAGTG	1 cut(s)	807
BveI	ACCTGC	1 cut(s)	510
Cac8I	GCNNGC	1 cut(s)	579
Cfr10I	RCCGGY	1 cut(s)	380
Cfr13I	GGNCC	5 cut(s)	61, 263, 544, 680, 766
ClaI	ATCGAT	1 cut(s)	706
Csp6I	GTAC	3 cut(s)	116, 508, 565
CspCI	CAANNNNNGTGG	2 cut(s)	241, 276
CviQI	GTAC	3 cut(s)	116, 508, 565
DdeI	CTNAG	3 cut(s)	317, 402, 879
DpnI	GATC	5 cut(s)	17, 467, 474, 486, 729
DpnII	GATC	5 cut(s)	15, 465, 472, 484, 727
EaeI	YGGCCR	1 cut(s)	382
Eam1104I	CTCTTC	2 cut(s)	120, 767
EarI	CTCTTC	2 cut(s)	120, 767
EciI	GGCGGA	1 cut(s)	8
Eco130I	CCWWGG	3 cut(s)	22, 524, 676
Eco24I	GRGCYC	1 cut(s)	203
Eco31I	GGTCTC	1 cut(s)	131
Eco32I	GATATC	1 cut(s)	714
Eco47I	GGWCC	4 cut(s)	61, 263, 680, 766
Eco57I	CTGAAG	1 cut(s)	551
Eco72I	CACGTG	1 cut(s)	816
Eco88I	CYCGRG	1 cut(s)	42
EcoO109I	RGGNCCY	1 cut(s)	544
EcoRV	GATATC	1 cut(s)	714
EcoT14I	CCWWGG	3 cut(s)	22, 524, 676
EcoT38I	GRGCYC	1 cut(s)	203
ErhI	CCWWGG	3 cut(s)	22, 524, 676
FalI	AAGNNNNNCTT	2 cut(s)	224, 256
FauNDI	CATATG	1 cut(s)	456
FbaI	TGATCA	1 cut(s)	465
Fnu4HI	GCNGC	4 cut(s)	74, 108, 449, 687
FokI	GGATG	4 cut(s)	195, 290, 317, 566
FriOI	GRGCYC	1 cut(s)	203
Fsp4HI	GCNGC	4 cut(s)	74, 108, 449, 687
FspBI	CTAG	1 cut(s)	476
GluI	GCNGC	4 cut(s)	74, 108, 449, 687
HaeIII	GGCC	3 cut(s)	384, 396, 545
HapII	CCGG	3 cut(s)	381, 548, 665
HindIII	AAGCTT	1 cut(s)	593
HinfI	GANTC	3 cut(s)	308, 611, 661
HpaII	CCGG	3 cut(s)	381, 548, 665
Hpy166II	GTNNAC	2 cut(s)	247, 735
Hpy188I	TCNGA	3 cut(s)	155, 405, 718
Hpy188III	TCNNGA	6 cut(s)	184, 212, 560, 665, 725, 898
Hpy8I	GTNNAC	2 cut(s)	247, 735
HpyAV	CCTTC	2 cut(s)	335, 657
HpyCH4III	ACNGT	4 cut(s)	151, 260, 392, 722
HpyCH4IV	ACGT	1 cut(s)	815
HpyF10VI	GCNNNNNNNGC	4 cut(s)	18, 128, 601, 825
HpyF3I	CTNAG	3 cut(s)	317, 402, 879
HpySE526I	ACGT	1 cut(s)	815
Kpn2I	TCCGGA	1 cut(s)	664
Ksp22I	TGATCA	1 cut(s)	465
Kzo9I	GATC	5 cut(s)	15, 465, 472, 484, 727
LmnI	GCTCC	4 cut(s)	198, 699, 742, 900
Lsp1109I	GCAGC	3 cut(s)	85, 94, 435
LweI	GCATC	4 cut(s)	268, 403, 776, 832
MaeI	CTAG	1 cut(s)	476
MaeII	ACGT	1 cut(s)	815
MalI	GATC	5 cut(s)	17, 467, 474, 486, 729
MboI	GATC	5 cut(s)	15, 465, 472, 484, 727
MboII	GAAGA	4 cut(s)	137, 544, 601, 784
MflI	RGATCY	2 cut(s)	15, 472
MhlI	GDGCHC	2 cut(s)	203, 821
MluCI	AATT	2 cut(s)	493, 802
MroI	TCCGGA	1 cut(s)	664
MseI	TTAA	1 cut(s)	758
MspA1I	CMGCKG	2 cut(s)	448, 686
MspI	CCGG	3 cut(s)	381, 548, 665
MspR9I	CCNGG	1 cut(s)	548
MwoI	GCNNNNNNNGC	4 cut(s)	18, 128, 601, 825
NciI	CCSGG	1 cut(s)	548
NcoI	CCATGG	2 cut(s)	22, 524
NdeI	CATATG	1 cut(s)	456
NdeII	GATC	5 cut(s)	15, 465, 472, 484, 727
NlaIV	GGNNCC	5 cut(s)	17, 63, 200, 379, 546
NspI	RCATGY	2 cut(s)	122, 907
PaeR7I	CTCGAG	1 cut(s)	42
PfeI	GAWTC	3 cut(s)	308, 611, 661
PkrI	GCNGC	4 cut(s)	75, 109, 450, 688
PmaCI	CACGTG	1 cut(s)	816
PmlI	CACGTG	1 cut(s)	816
Ppu21I	YACGTR	1 cut(s)	816
PsiI	TTATAA	1 cut(s)	797
PspCI	CACGTG	1 cut(s)	816
PspN4I	GGNNCC	5 cut(s)	17, 63, 200, 379, 546
PspPI	GGNCC	5 cut(s)	61, 263, 544, 680, 766
PspXI	VCTCGAGB	1 cut(s)	42
PstI	CTGCAG	2 cut(s)	507, 583
PsuI	RGATCY	2 cut(s)	15, 472
RsaI	GTAC	3 cut(s)	117, 509, 566
RsaNI	GTAC	3 cut(s)	116, 508, 565
SaqAI	TTAA	1 cut(s)	758
SatI	GCNGC	4 cut(s)	74, 108, 449, 687
Sau3AI	GATC	5 cut(s)	15, 465, 472, 484, 727
Sau96I	GGNCC	5 cut(s)	61, 263, 544, 680, 766
ScrFI	CCNGG	1 cut(s)	548
SduI	GDGCHC	2 cut(s)	203, 821
SfaNI	GCATC	4 cut(s)	268, 403, 776, 832
SfcI	CTRYAG	5 cut(s)	48, 284, 322, 503, 579
Sfr274I	CTCGAG	1 cut(s)	42
SinI	GGWCC	4 cut(s)	61, 263, 680, 766
SlaI	CTCGAG	1 cut(s)	42
SmlI	CTYRAG	2 cut(s)	42, 230
SmoI	CTYRAG	2 cut(s)	42, 230
Sse9I	AATT	2 cut(s)	493, 802
SsiI	CCGC	4 cut(s)	19, 59, 446, 686
SspI	AATATT	2 cut(s)	90, 370
SspMI	CTAG	1 cut(s)	476
StyD4I	CCNGG	1 cut(s)	546
StyI	CCWWGG	3 cut(s)	22, 524, 676
TaaI	ACNGT	4 cut(s)	151, 260, 392, 722
TaiI	ACGT	1 cut(s)	818
TaqI	TCGA	2 cut(s)	43, 706
TasI	AATT	2 cut(s)	493, 802
TatI	WGTACW	3 cut(s)	115, 507, 564
TauI	GCSGC	1 cut(s)	689
TfiI	GAWTC	3 cut(s)	308, 611, 661
Tru1I	TTAA	1 cut(s)	758
Tru9I	TTAA	1 cut(s)	758
TscAI	CASTG	1 cut(s)	814
TseI	GCWGC	3 cut(s)	73, 107, 448
TspDTI	ATGAA	4 cut(s)	159, 380, 624, 872
TspGWI	ACGGA	1 cut(s)	191
TspRI	CASTG	1 cut(s)	814
VpaK11BI	GGWCC	4 cut(s)	61, 263, 680, 766
XceI	RCATGY	2 cut(s)	122, 907
XhoI	CTCGAG	1 cut(s)	42
XspI	CTAG	1 cut(s)	476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.