Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0013888

Physical Location & Seq

Genomic Coordinates Reverse (-)

17893376 .. 17895830

Gene Structure 2455 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0191600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGAGATTTTAGAGATTGCTGGAATTTTGTTTTCTCTCTCATCTCGACTCGAACTCGAATCCATACACTTGGATGATACGCCGTCGTTTGGAGAGCCTTCCTCCGTTAGAAAGCTCAGCTTCCCTTTCCCGCCACGACCGGGCGGTTGTGTCAAGCTGCTGGGCTCCCGCAATGGTCTGGTATTTGTAGCTGTTGATGAGAATTTGTTTTATATCTGGAACCCATGCATTGGATTCTTGAAGCAATTACCTGATCCAGGTTTTCCCTTAGATGAAAATGTGATACTCTTTTATGGCGTTGGCTATTTGTCCGCCACCCATGATTACAAAGTTTTGGTTGCCTCCTATGACCTTCGTGAAGAGGAGATAGAGGTCGAGATGTTCTCATTGAGAACTCACATTTGGCTGAAGATTGAACCCCCTTGCCTAAACATCCCTTTTCTACTCGATCTTCAGGGGACTCTTTCGAATGATGCACTTCATTGGCTAAACTACGTCGATGACAACAAGGATGAAATAGTTTCTTTTGACTTGGAAGACGGGGTGTTCCGGAGAATGCCACTGCCTAATTTCGACCGTGACGGTAAGACTTTCAGCAAGCTTGGGGTTTGTGGAGGGTGCCTGTGTGTATCGCGTTTTCCGGATGGTGCTTTTGACTCTATTGATTTCTGGGTCATGAGAGAATATGCCGTCAGTGGCTCATGGATTATGCTCTTTAGCTTAAAGCCGCCTGAGTTGCCCTTGTATTCCAGACAATTCTTGGTTCTGGAAAGTAGTACAGTTGCCGCGAGATGGACTGACGAGGGGTCCAAGTTGATAAAGATTGATCATAAAGAAGACGAGAAGCTTGGGCGGTATATGCTTAAGGGGGTTCGCGTGTGTATGATTGAATATGAAGAGAGTCTACTTTGGATTAGTAGTTATCATCCAGTTGAAAAGAAAGAGCAGGTCCAGATACTCGAAACCCATCAGAAGGCCTCAGGAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000104 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006119 GO:0006121 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009055 GO:0009060 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016020 GO:0016310 GO:0016491 GO:0016627 GO:0017144 GO:0019637 GO:0019693 GO:0022900 GO:0022904 GO:0032991 GO:0034641 GO:0042773 GO:0042775 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0045273 GO:0045281 GO:0045333 GO:0046034 GO:0046483 GO:0055086 GO:0055114 GO:0070469 GO:0071704 GO:0072521 GO:0098796 GO:0098803 GO:1901135 GO:1901360 GO:1901564 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00020 ko00190 ko01100 ko01110 ko01120 ko01130 ko01200 ko04714 ko04932 ko05010 ko05012 ko05016 map00020 map00190 map01100 map01110 map01120 map01130 map01200 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Fer2_3 Fer4_17 Fer4_8

Protein Analysis

329

Amino Acids

37.53

Weight (kDa)

4.86

Isoelectric Point (pI)

53.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_3	PF08268	14 - 236	1.5e-13	F-box associated beta propeller domain
FBA_1	PF07734	58 - 289	7.5e-15	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65165 AT5G65165
fragaria_vesca	FvH4_1g21120
prunus_persica	Prupe.6G182900_v2.0.a1 Prupe.6G183100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0114901
rosa_laevigata	RLG00000018133
rosa_multiflora	Rmu_sc0002764.1_g000022
rosa_roxburghii	Rroxscaffold_2G00130430
rosa_rugosa	Rorug02G0191500 Rorug02G0191600 Rorug02G0191600
rosa_samantha	Rh2AG250200 Rh2BG259800 Rh2CG254600 Rh2DG258300
rosa_wichuraiana	Rw2G019510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	937
AccB1I	GGYRCC	1 cut(s)	618
AccB7I	CCANNNNNTGG	1 cut(s)	230
AccI	GTMKAC	1 cut(s)	904
AccII	CGCG	3 cut(s)	634, 788, 876
AccIII	TCCGGA	2 cut(s)	549, 640
AciI	CCGC	7 cut(s)	131, 144, 169, 312, 728, 786, 853
AclWI	GGATC	1 cut(s)	248
AcsI	RAATTY	2 cut(s)	24, 202
AcuI	CTGAAG	2 cut(s)	428, 437
AfaI	GTAC	1 cut(s)	778
AfiI	CCNNNNNNNGG	6 cut(s)	89, 140, 230, 257, 792, 973
AflII	CTTAAG	1 cut(s)	863
AgsI	TTSAA	4 cut(s)	241, 416, 890, 935
AhdI	GACNNNNNGTC	1 cut(s)	805
AjnI	CCWGG	1 cut(s)	256
AjuI	GAANNNNNNNTTGG	2 cut(s)	385, 417
AluBI	AGCT	8 cut(s)	115, 120, 157, 191, 601, 720, 847, 987
AluI	AGCT	8 cut(s)	115, 120, 157, 191, 601, 720, 847, 987
AlwI	GGATC	1 cut(s)	248
Aor13HI	TCCGGA	2 cut(s)	549, 640
AoxI	GGCC	1 cut(s)	975
ApeKI	GCWGC	1 cut(s)	157
ApoI	RAATTY	2 cut(s)	24, 202
AspS9I	GGNCC	2 cut(s)	807, 949
AsuC2I	CCSGG	1 cut(s)	141
AsuII	TTCGAA	1 cut(s)	467
AvaII	GGWCC	2 cut(s)	807, 949
AxyI	CCTNAGG	1 cut(s)	979
BanI	GGYRCC	1 cut(s)	618
BanII	GRGCYC	1 cut(s)	167
BarI	GAAGNNNNNNTAC	2 cut(s)	888, 920
BbsI	GAAGAC	2 cut(s)	543, 843
BbvI	GCAGC	1 cut(s)	144
BccI	CCATC	3 cut(s)	638, 786, 975
BceAI	ACGGC	2 cut(s)	67, 674
BciT130I	CCWGG	1 cut(s)	258
BclI	TGATCA	1 cut(s)	826
BcnI	CCSGG	1 cut(s)	141
BfrI	CTTAAG	1 cut(s)	863
BfuAI	ACCTGC	1 cut(s)	937
BisI	GCNGC	3 cut(s)	158, 728, 786
BlpI	GCTNAGC	1 cut(s)	116
BlsI	GCNGC	3 cut(s)	159, 729, 787
Bme1390I	CCNGG	2 cut(s)	141, 258
Bme18I	GGWCC	2 cut(s)	807, 949
BmeRI	GACNNNNNGTC	1 cut(s)	805
BmgT120I	GGNCC	2 cut(s)	807, 949
BmiI	GGNNCC	4 cut(s)	166, 221, 620, 808
BmrFI	CCNGG	2 cut(s)	141, 258
BmsI	GCATC	1 cut(s)	463
BpiI	GAAGAC	2 cut(s)	543, 843
BplI	GAGNNNNNCTC	4 cut(s)	86, 118, 368, 400
Bpu1102I	GCTNAGC	1 cut(s)	116
Bpu14I	TTCGAA	1 cut(s)	467
BpuMI	CCSGG	1 cut(s)	141
BsaWI	WCCGGW	2 cut(s)	549, 640
Bsc4I	CCNNNNNNNGG	6 cut(s)	89, 140, 230, 257, 792, 973
Bse1I	ACTGG	1 cut(s)	929
Bse21I	CCTNAGG	1 cut(s)	979
Bse3DI	GCAATG	1 cut(s)	178
BseAI	TCCGGA	2 cut(s)	549, 640
BseBI	CCWGG	1 cut(s)	258
BseGI	GGATG	5 cut(s)	79, 432, 517, 649, 925
BseLI	CCNNNNNNNGG	6 cut(s)	89, 140, 230, 257, 792, 973
BseMI	GCAATG	1 cut(s)	178
BseMII	CTCAG	2 cut(s)	130, 723
BseNI	ACTGG	1 cut(s)	929
BseRI	GAGGAG	1 cut(s)	377
BseXI	GCAGC	1 cut(s)	144
BseYI	CCCAGC	1 cut(s)	160
Bsh1236I	CGCG	3 cut(s)	634, 788, 876
Bsh1285I	CGRYCG	2 cut(s)	140, 577
BshFI	GGCC	1 cut(s)	977
BshNI	GGYRCC	1 cut(s)	618
BsiEI	CGRYCG	2 cut(s)	140, 577
BsiSI	CCGG	3 cut(s)	140, 550, 641
BslFI	GGGAC	1 cut(s)	472
BslI	CCNNNNNNNGG	6 cut(s)	89, 140, 230, 257, 792, 973
BsmFI	GGGAC	1 cut(s)	472
BsmI	GAATGC	1 cut(s)	561
BsnI	GGCC	1 cut(s)	977
Bsp119I	TTCGAA	1 cut(s)	467
Bsp1286I	GDGCHC	1 cut(s)	167
Bsp13I	TCCGGA	2 cut(s)	549, 640
Bsp143I	GATC	3 cut(s)	253, 448, 826
Bsp1720I	GCTNAGC	1 cut(s)	116
BspACI	CCGC	7 cut(s)	131, 144, 169, 312, 728, 786, 853
BspANI	GGCC	1 cut(s)	977
BspCNI	CTCAG	2 cut(s)	129, 724
BspEI	TCCGGA	2 cut(s)	549, 640
BspFNI	CGCG	3 cut(s)	634, 788, 876
BspHI	TCATGA	1 cut(s)	675
BspLI	GGNNCC	4 cut(s)	166, 221, 620, 808
BspMI	ACCTGC	1 cut(s)	937
BspPI	GGATC	1 cut(s)	248
BspT104I	TTCGAA	1 cut(s)	467
BspT107I	GGYRCC	1 cut(s)	618
BspTI	CTTAAG	1 cut(s)	863
BsrDI	GCAATG	1 cut(s)	178
BsrI	ACTGG	1 cut(s)	929
BssMI	GATC	3 cut(s)	253, 448, 826
Bst2UI	CCWGG	1 cut(s)	258
Bst4CI	ACNGT	3 cut(s)	578, 584, 781
Bst6I	CTCTTC	2 cut(s)	354, 891
BstAFI	CTTAAG	1 cut(s)	863
BstBI	TTCGAA	1 cut(s)	467
BstC8I	GCNNGC	1 cut(s)	599
BstDEI	CTNAG	4 cut(s)	116, 268, 732, 979
BstENI	CCTNNNNNAGG	1 cut(s)	255
BstF5I	GGATG	5 cut(s)	79, 432, 517, 649, 925
BstFNI	CGCG	3 cut(s)	634, 788, 876
BstKTI	GATC	3 cut(s)	256, 451, 829
BstMBI	GATC	3 cut(s)	253, 448, 826
BstMCI	CGRYCG	2 cut(s)	140, 577
BstMWI	GCNNNNNNNGC	2 cut(s)	736, 859
BstNI	CCWGG	1 cut(s)	258
BstSCI	CCNGG	2 cut(s)	139, 256
BstUI	CGCG	3 cut(s)	634, 788, 876
BstV1I	GCAGC	1 cut(s)	144
BstV2I	GAAGAC	2 cut(s)	543, 843
BstXI	CCANNNNNNTGG	1 cut(s)	70
Bsu36I	CCTNAGG	1 cut(s)	979
BsuRI	GGCC	1 cut(s)	977
BtsCI	GGATG	5 cut(s)	79, 432, 517, 649, 925
BtsI	GCAGTG	1 cut(s)	560
BtsIMutI	CAGTG	2 cut(s)	560, 700
BveI	ACCTGC	1 cut(s)	937
Cac8I	GCNNGC	1 cut(s)	599
CciI	TCATGA	1 cut(s)	675
Cfr13I	GGNCC	2 cut(s)	807, 949
Csp6I	GTAC	1 cut(s)	777
CviAII	CATG	4 cut(s)	225, 320, 676, 702
CviQI	GTAC	1 cut(s)	777
DdeI	CTNAG	4 cut(s)	116, 268, 732, 979
DpnI	GATC	3 cut(s)	255, 450, 828
DpnII	GATC	3 cut(s)	253, 448, 826
DriI	GACNNNNNGTC	1 cut(s)	805
Eam1104I	CTCTTC	2 cut(s)	354, 891
Eam1105I	GACNNNNNGTC	1 cut(s)	805
EarI	CTCTTC	2 cut(s)	354, 891
EciI	GGCGGA	1 cut(s)	301
Eco147I	AGGCCT	1 cut(s)	977
Eco24I	GRGCYC	1 cut(s)	167
Eco47I	GGWCC	2 cut(s)	807, 949
Eco57I	CTGAAG	2 cut(s)	428, 437
Eco81I	CCTNAGG	1 cut(s)	979
EcoNI	CCTNNNNNAGG	1 cut(s)	255
EcoRII	CCWGG	1 cut(s)	256
EcoT22I	ATGCAT	1 cut(s)	230
EcoT38I	GRGCYC	1 cut(s)	167
FaeI	CATG	4 cut(s)	228, 323, 679, 705
FalI	AAGNNNNNCTT	2 cut(s)	104, 136
FaqI	GGGAC	1 cut(s)	472
FatI	CATG	4 cut(s)	224, 319, 675, 701
FauI	CCCGC	2 cut(s)	138, 176
FbaI	TGATCA	1 cut(s)	826
FblI	GTMKAC	1 cut(s)	904
Fnu4HI	GCNGC	3 cut(s)	158, 728, 786
FokI	GGATG	5 cut(s)	86, 419, 524, 656, 912
FriOI	GRGCYC	1 cut(s)	167
Fsp4HI	GCNGC	3 cut(s)	158, 728, 786
GluI	GCNGC	3 cut(s)	158, 728, 786
GsaI	CCCAGC	1 cut(s)	164
HaeIII	GGCC	1 cut(s)	977
HapII	CCGG	3 cut(s)	140, 550, 641
Hin1II	CATG	4 cut(s)	228, 323, 679, 705
HindIII	AAGCTT	2 cut(s)	599, 845
HinfI	GANTC	6 cut(s)	48, 59, 234, 460, 656, 901
HpaII	CCGG	3 cut(s)	140, 550, 641
Hpy166II	GTNNAC	1 cut(s)	905
Hpy188I	TCNGA	1 cut(s)	972
Hpy8I	GTNNAC	1 cut(s)	905
Hpy99I	CGWCG	2 cut(s)	88, 500
HpyAV	CCTTC	3 cut(s)	108, 362, 967
HpyCH4III	ACNGT	3 cut(s)	578, 584, 781
HpyCH4IV	ACGT	1 cut(s)	495
HpyCH4V	TGCA	2 cut(s)	228, 476
HpyF10VI	GCNNNNNNNGC	2 cut(s)	736, 859
HpyF3I	CTNAG	4 cut(s)	116, 268, 732, 979
HpySE526I	ACGT	1 cut(s)	495
Hsp92II	CATG	4 cut(s)	228, 323, 679, 705
Kpn2I	TCCGGA	2 cut(s)	549, 640
Ksp22I	TGATCA	1 cut(s)	826
Kzo9I	GATC	3 cut(s)	253, 448, 826
LmnI	GCTCC	1 cut(s)	170
Lsp1109I	GCAGC	1 cut(s)	144
LweI	GCATC	1 cut(s)	463
MaeII	ACGT	1 cut(s)	495
MaeIII	GTNAC	1 cut(s)	578
MalI	GATC	3 cut(s)	255, 450, 828
MboI	GATC	3 cut(s)	253, 448, 826
MboII	GAAGA	6 cut(s)	371, 421, 443, 548, 848, 908
MhlI	GDGCHC	1 cut(s)	167
MluCI	AATT	5 cut(s)	24, 202, 245, 568, 755
MlyI	GAGTC	4 cut(s)	42, 454, 650, 910
MnlI	CCTC	7 cut(s)	112, 352, 355, 364, 608, 796, 988
Mph1103I	ATGCAT	1 cut(s)	230
MroI	TCCGGA	2 cut(s)	549, 640
MseI	TTAA	2 cut(s)	722, 864
MslI	CAYNNNNRTG	1 cut(s)	72
MspCI	CTTAAG	1 cut(s)	863
MspI	CCGG	3 cut(s)	140, 550, 641
MspR9I	CCNGG	2 cut(s)	141, 258
Mva1269I	GAATGC	1 cut(s)	561
MvaI	CCWGG	1 cut(s)	258
MvnI	CGCG	3 cut(s)	634, 788, 876
MwoI	GCNNNNNNNGC	2 cut(s)	736, 859
NciI	CCSGG	1 cut(s)	141
NdeII	GATC	3 cut(s)	253, 448, 826
NlaIII	CATG	4 cut(s)	228, 323, 679, 705
NlaIV	GGNNCC	4 cut(s)	166, 221, 620, 808
NmuCI	GTSAC	1 cut(s)	578
NsiI	ATGCAT	1 cut(s)	230
NspV	TTCGAA	1 cut(s)	467
PagI	TCATGA	1 cut(s)	675
PceI	AGGCCT	1 cut(s)	977
PctI	GAATGC	1 cut(s)	561
PfeI	GAWTC	2 cut(s)	59, 234
PflMI	CCANNNNNTGG	1 cut(s)	230
PkrI	GCNGC	3 cut(s)	159, 729, 787
PleI	GAGTC	4 cut(s)	42, 454, 650, 909
PpsI	GAGTC	4 cut(s)	42, 454, 650, 909
Psp6I	CCWGG	1 cut(s)	256
PspFI	CCCAGC	1 cut(s)	160
PspGI	CCWGG	1 cut(s)	256
PspN4I	GGNNCC	4 cut(s)	166, 221, 620, 808
PspPI	GGNCC	2 cut(s)	807, 949
RsaI	GTAC	1 cut(s)	778
RsaNI	GTAC	1 cut(s)	777
RseI	CAYNNNNRTG	1 cut(s)	72
SaqAI	TTAA	2 cut(s)	722, 864
SatI	GCNGC	3 cut(s)	158, 728, 786
Sau3AI	GATC	3 cut(s)	253, 448, 826
Sau96I	GGNCC	2 cut(s)	807, 949
SchI	GAGTC	4 cut(s)	42, 454, 650, 910
ScrFI	CCNGG	2 cut(s)	141, 258
SduI	GDGCHC	1 cut(s)	167
SfaNI	GCATC	1 cut(s)	463
SfuI	TTCGAA	1 cut(s)	467
SinI	GGWCC	2 cut(s)	807, 949
SmiMI	CAYNNNNRTG	1 cut(s)	72
SmlI	CTYRAG	1 cut(s)	863
SmoI	CTYRAG	1 cut(s)	863
Sse9I	AATT	5 cut(s)	24, 202, 245, 568, 755
SseBI	AGGCCT	1 cut(s)	977
SsiI	CCGC	7 cut(s)	131, 144, 169, 312, 728, 786, 853
StuI	AGGCCT	1 cut(s)	977
StyD4I	CCNGG	2 cut(s)	139, 256
TaaI	ACNGT	3 cut(s)	578, 584, 781
TaiI	ACGT	1 cut(s)	498
TaqI	TCGA	9 cut(s)	46, 51, 57, 375, 447, 467, 498, 573, 960
TasI	AATT	5 cut(s)	24, 202, 245, 568, 755
TatI	WGTACW	1 cut(s)	776
TauI	GCSGC	2 cut(s)	730, 788
TfiI	GAWTC	2 cut(s)	59, 234
Tru1I	TTAA	2 cut(s)	722, 864
Tru9I	TTAA	2 cut(s)	722, 864
TscAI	CASTG	2 cut(s)	567, 700
TseFI	GTSAC	1 cut(s)	578
TseI	GCWGC	1 cut(s)	157
Tsp45I	GTSAC	1 cut(s)	578
TspDTI	ATGAA	4 cut(s)	288, 470, 528, 909
TspGWI	ACGGA	1 cut(s)	94
TspRI	CASTG	2 cut(s)	567, 700
Van91I	CCANNNNNTGG	1 cut(s)	230
Vha464I	CTTAAG	1 cut(s)	863
VpaK11BI	GGWCC	2 cut(s)	807, 949
XagI	CCTNNNNNAGG	1 cut(s)	255
XapI	RAATTY	2 cut(s)	24, 202
XcmI	CCANNNNNNNNNTGG	1 cut(s)	757
XmiI	GTMKAC	1 cut(s)	904
Zsp2I	ATGCAT	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.