Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0013888

Physical Location & Seq

Genomic Coordinates Forward (+)

27565026 .. 27570575

Gene Structure 5550 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG259800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGTCGATCATTTCAGCAGTCGCCTGGATCATTTGCAAAACTTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGTAACCGAGATGTCAAAGAGCTGGATCCGCCATGGCTACAACAAAGTAGCTCGAGCTGTAGGCAAAGCGGACCCAAGGAAGCTGCAAGACTTTCCAATATTGAAAGGACACCCTGCTGCACAAGTACATGCAGAAGAGGCTTTTGAGACCCATGGAACTGTCAGAAGCAGAAACAAAGTTCTAAAGGAGTTCAAGATTTACAGATGGAGCCCCGACCTTCCCGACAACAAGCCTTACCTCAAGTCTTACTTTGTGAACCTCAACAACTGTGGTCCAATGGTTTTGGATGCATTACAGAGGATAAAAGCAGAGGATGATTCAAGCCTGAGCTATAGGAGGTCATGCAGAGAAGGAATATATCTAGTTGTTGATCTCACTAATTTCTACCTCCAGTACAAGTTGATTGAACCATGGCTGAAGACTAAAAAGCCCCCGGAGTATGGTCGGGAGTACAAGCAATCGCCTACAGACCGGAAGAAGCTTGACAGGCTTTATGAATGTATACTTTGTGCTTGTTGTTCTACCTCATGCCCTTCCTACCGGTGGAATCCAGAGGAGTTCCTTGGACCAGCGGCTTTGCTCCACGCTTATCGATGGATATCTGACAGTCGGGATCAGTCCACAGAGGAGCGATTGCAGTCATTAACAGAGGACCAGAAGAGGCTATATAGATGCAACATTATAAAGAATTGCTCTGCCACGTGCCCCAAAAGCCTCAATCCTGCCGACGCCATACAGAAAATGAAAACCAAGCATTTGTTCTCTCAGCCTGTTGAAGTGGTCGGGAGCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000104 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006119 GO:0006121 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009055 GO:0009060 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016020 GO:0016310 GO:0016491 GO:0016627 GO:0017144 GO:0019637 GO:0019693 GO:0022900 GO:0022904 GO:0032991 GO:0034641 GO:0042773 GO:0042775 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0045273 GO:0045281 GO:0045333 GO:0046034 GO:0046483 GO:0055086 GO:0055114 GO:0070469 GO:0071704 GO:0072521 GO:0098796 GO:0098803 GO:1901135 GO:1901360 GO:1901564 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00020 ko00190 ko01100 ko01110 ko01120 ko01130 ko01200 ko04714 ko04932 ko05010 ko05012 ko05016 map00020 map00190 map01100 map01110 map01120 map01130 map01200 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Fer2_3 Fer4_17 Fer4_8

Protein Analysis

291

Amino Acids

34.14

Weight (kDa)

9.11

Isoelectric Point (pI)

59.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fer2_3	PF13085	91 - 146	1.2e-09	2Fe-2S iron-sulfur cluster binding domain
Fer4_8	PF13183	191 - 265	7e-09	4Fe-4S dicluster domain
Fer4_17	PF13534	193 - 267	6.3e-09	4Fe-4S dicluster domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65165 AT5G65165
fragaria_vesca	FvH4_1g21120
prunus_persica	Prupe.6G182900_v2.0.a1 Prupe.6G183100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0114901
rosa_laevigata	RLG00000018133
rosa_multiflora	Rmu_sc0002764.1_g000022
rosa_roxburghii	Rroxscaffold_2G00130430
rosa_rugosa	Rorug02G0191500 Rorug02G0191600 Rorug02G0191600
rosa_samantha	Rh2AG250200 Rh2BG259800 Rh2CG254600 Rh2DG258300
rosa_wichuraiana	Rw2G019510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	764
AccI	GTMKAC	1 cut(s)	583
AciI	CCGC	3 cut(s)	109, 149, 653
AclWI	GGATC	4 cut(s)	36, 100, 113, 702
AcuI	CTGAAG	1 cut(s)	518
AcvI	CACGTG	1 cut(s)	783
AcyI	GRCGYC	1 cut(s)	810
AfaI	GTAC	3 cut(s)	207, 476, 533
AfiI	CCNNNNNNNGG	2 cut(s)	521, 624
AgeI	ACCGGT	1 cut(s)	621
AgsI	TTSAA	5 cut(s)	184, 274, 402, 488, 857
AjnI	CCWGG	1 cut(s)	24
AjuI	GAANNNNNNNTTGG	2 cut(s)	824, 856
AluBI	AGCT	6 cut(s)	102, 131, 137, 163, 411, 562
AluI	AGCT	6 cut(s)	102, 131, 137, 163, 411, 562
Alw26I	GTCTC	1 cut(s)	221
AlwI	GGATC	4 cut(s)	36, 100, 113, 702
Ama87I	CYCGRG	1 cut(s)	132
ApeKI	GCWGC	2 cut(s)	163, 197
AsiGI	ACCGGT	1 cut(s)	621
AspS9I	GGNCC	4 cut(s)	151, 353, 647, 733
AsuC2I	CCSGG	1 cut(s)	515
AvaI	CYCGRG	1 cut(s)	132
AvaII	GGWCC	4 cut(s)	151, 353, 647, 733
BaeGI	GKGCMC	1 cut(s)	788
BamHI	GGATCC	1 cut(s)	105
BanII	GRGCYC	1 cut(s)	293
BbrPI	CACGTG	1 cut(s)	783
BbsI	GAAGAC	1 cut(s)	506
BbvI	GCAGC	2 cut(s)	150, 184
BccI	CCATC	2 cut(s)	279, 669
BciT130I	CCWGG	1 cut(s)	26
BcnI	CCSGG	1 cut(s)	515
BcoDI	GTCTC	1 cut(s)	221
BfaI	CTAG	1 cut(s)	443
BfmI	CTRYAG	3 cut(s)	138, 412, 546
BisI	GCNGC	3 cut(s)	164, 198, 654
BlsI	GCNGC	3 cut(s)	165, 199, 655
Bme1390I	CCNGG	2 cut(s)	26, 515
Bme18I	GGWCC	4 cut(s)	151, 353, 647, 733
BmeT110I	CYCGRG	1 cut(s)	132
BmgT120I	GGNCC	4 cut(s)	151, 353, 647, 733
BmiI	GGNNCC	3 cut(s)	107, 153, 290
BmrFI	CCNGG	2 cut(s)	26, 515
BmsI	GCATC	2 cut(s)	358, 743
BpiI	GAAGAC	1 cut(s)	506
BpmI	CTGGAG	1 cut(s)	455
Bpu10I	CCTNAGC	1 cut(s)	407
BpuEI	CTTGAG	2 cut(s)	64, 305
BpuMI	CCSGG	1 cut(s)	515
Bsa29I	ATCGAT	1 cut(s)	673
BsaAI	YACGTR	1 cut(s)	783
BsaBI	GATNNNNATC	1 cut(s)	679
BsaHI	GRCGYC	1 cut(s)	810
BsaI	GGTCTC	1 cut(s)	221
BsaJI	CCNNGG	6 cut(s)	112, 155, 232, 491, 513, 643
BsaWI	WCCGGW	2 cut(s)	552, 621
Bsc4I	CCNNNNNNNGG	2 cut(s)	521, 624
Bse118I	RCCGGY	1 cut(s)	621
Bse1I	ACTGG	1 cut(s)	472
Bse8I	GATNNNNATC	1 cut(s)	679
BseBI	CCWGG	1 cut(s)	26
BseCI	ATCGAT	1 cut(s)	673
BseDI	CCNNGG	6 cut(s)	112, 155, 232, 491, 513, 643
BseGI	GGATG	2 cut(s)	373, 400
BseJI	GATNNNNATC	1 cut(s)	679
BseLI	CCNNNNNNNGG	2 cut(s)	521, 624
BseMII	CTCAG	2 cut(s)	398, 860
BseNI	ACTGG	1 cut(s)	472
BseRI	GAGGAG	2 cut(s)	650, 722
BseSI	GKGCMC	1 cut(s)	788
BseXI	GCAGC	2 cut(s)	150, 184
BsgI	GTGCAG	1 cut(s)	183
BshTI	ACCGGT	1 cut(s)	621
BshVI	ATCGAT	1 cut(s)	673
BsiHKCI	CYCGRG	1 cut(s)	132
BsiSI	CCGG	3 cut(s)	515, 553, 622
BslI	CCNNNNNNNGG	2 cut(s)	521, 624
BsmAI	GTCTC	1 cut(s)	221
Bso31I	GGTCTC	1 cut(s)	221
BsoBI	CYCGRG	1 cut(s)	132
Bsp1286I	GDGCHC	2 cut(s)	293, 788
Bsp143I	GATC	5 cut(s)	7, 28, 105, 451, 694
Bsp19I	CCATGG	3 cut(s)	112, 232, 491
BspACI	CCGC	3 cut(s)	109, 149, 653
BspCNI	CTCAG	2 cut(s)	399, 859
BspDI	ATCGAT	1 cut(s)	673
BspLI	GGNNCC	3 cut(s)	107, 153, 290
BspPI	GGATC	4 cut(s)	36, 100, 113, 702
BspTNI	GGTCTC	1 cut(s)	221
BsrFI	RCCGGY	1 cut(s)	621
BsrI	ACTGG	1 cut(s)	472
BssAI	RCCGGY	1 cut(s)	621
BssECI	CCNNGG	6 cut(s)	112, 155, 232, 491, 513, 643
BssMI	GATC	5 cut(s)	7, 28, 105, 451, 694
BssNAI	GTATAC	1 cut(s)	584
BssNI	GRCGYC	1 cut(s)	810
BssT1I	CCWWGG	5 cut(s)	112, 155, 232, 491, 643
Bst1107I	GTATAC	1 cut(s)	584
Bst2UI	CCWGG	1 cut(s)	26
Bst4CI	ACNGT	3 cut(s)	241, 350, 689
Bst6I	CTCTTC	2 cut(s)	210, 734
BstACI	GRCGYC	1 cut(s)	810
BstBAI	YACGTR	1 cut(s)	783
BstDEI	CTNAG	2 cut(s)	407, 846
BstDSI	CCRYGG	3 cut(s)	112, 232, 491
BstEII	GGTNACC	1 cut(s)	82
BstF5I	GGATG	2 cut(s)	373, 400
BstKTI	GATC	5 cut(s)	10, 31, 108, 454, 697
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	5 cut(s)	7, 28, 105, 451, 694
BstMWI	GCNNNNNNNGC	4 cut(s)	108, 218, 568, 792
BstNI	CCWGG	1 cut(s)	26
BstNSI	RCATGY	2 cut(s)	212, 874
BstPI	GGTNACC	1 cut(s)	82
BstSCI	CCNGG	2 cut(s)	24, 513
BstSFI	CTRYAG	3 cut(s)	138, 412, 546
BstSLI	GKGCMC	1 cut(s)	788
BstV1I	GCAGC	2 cut(s)	150, 184
BstV2I	GAAGAC	1 cut(s)	506
BstX2I	RGATCY	1 cut(s)	105
BstYI	RGATCY	1 cut(s)	105
BstZ17I	GTATAC	1 cut(s)	584
Bsu15I	ATCGAT	1 cut(s)	673
BsuTUI	ATCGAT	1 cut(s)	673
BtgI	CCRYGG	3 cut(s)	112, 232, 491
BtsCI	GGATG	2 cut(s)	373, 400
Cfr10I	RCCGGY	1 cut(s)	621
Cfr13I	GGNCC	4 cut(s)	151, 353, 647, 733
ClaI	ATCGAT	1 cut(s)	673
CseI	GACGC	1 cut(s)	818
Csp6I	GTAC	3 cut(s)	206, 475, 532
CspAI	ACCGGT	1 cut(s)	621
CspCI	CAANNNNNGTGG	2 cut(s)	331, 366
CviAII	CATG	7 cut(s)	113, 209, 233, 423, 492, 609, 871
CviQI	GTAC	3 cut(s)	206, 475, 532
DdeI	CTNAG	2 cut(s)	407, 846
DpnI	GATC	5 cut(s)	9, 30, 107, 453, 696
DpnII	GATC	5 cut(s)	7, 28, 105, 451, 694
Eam1104I	CTCTTC	2 cut(s)	210, 734
EarI	CTCTTC	2 cut(s)	210, 734
EciI	GGCGGA	1 cut(s)	98
Eco130I	CCWWGG	5 cut(s)	112, 155, 232, 491, 643
Eco24I	GRGCYC	1 cut(s)	293
Eco31I	GGTCTC	1 cut(s)	221
Eco32I	GATATC	1 cut(s)	681
Eco47I	GGWCC	4 cut(s)	151, 353, 647, 733
Eco57I	CTGAAG	1 cut(s)	518
Eco72I	CACGTG	1 cut(s)	783
Eco88I	CYCGRG	1 cut(s)	132
Eco91I	GGTNACC	1 cut(s)	82
EcoO65I	GGTNACC	1 cut(s)	82
EcoRII	CCWGG	1 cut(s)	24
EcoRV	GATATC	1 cut(s)	681
EcoT14I	CCWWGG	5 cut(s)	112, 155, 232, 491, 643
EcoT22I	ATGCAT	1 cut(s)	373
EcoT38I	GRGCYC	1 cut(s)	293
ErhI	CCWWGG	5 cut(s)	112, 155, 232, 491, 643
FaeI	CATG	7 cut(s)	116, 212, 236, 426, 495, 612, 874
FalI	AAGNNNNNCTT	2 cut(s)	314, 346
FatI	CATG	7 cut(s)	112, 208, 232, 422, 491, 608, 870
FblI	GTMKAC	1 cut(s)	583
Fnu4HI	GCNGC	3 cut(s)	164, 198, 654
FokI	GGATG	2 cut(s)	380, 407
FriOI	GRGCYC	1 cut(s)	293
Fsp4HI	GCNGC	3 cut(s)	164, 198, 654
FspBI	CTAG	1 cut(s)	443
GluI	GCNGC	3 cut(s)	164, 198, 654
GsuI	CTGGAG	1 cut(s)	455
HapII	CCGG	3 cut(s)	515, 553, 622
HgaI	GACGC	1 cut(s)	818
Hin1I	GRCGYC	1 cut(s)	810
Hin1II	CATG	7 cut(s)	116, 212, 236, 426, 495, 612, 874
HindIII	AAGCTT	1 cut(s)	560
HinfI	GANTC	2 cut(s)	398, 628
HpaII	CCGG	3 cut(s)	515, 553, 622
Hpy166II	GTNNAC	3 cut(s)	337, 584, 702
Hpy188I	TCNGA	2 cut(s)	245, 685
Hpy188III	TCNNGA	6 cut(s)	274, 302, 527, 632, 692, 865
Hpy8I	GTNNAC	3 cut(s)	337, 584, 702
Hpy99I	CGWCG	1 cut(s)	812
HpyAV	CCTTC	3 cut(s)	308, 425, 624
HpyCH4III	ACNGT	3 cut(s)	241, 350, 689
HpyCH4IV	ACGT	1 cut(s)	782
HpyCH4V	TGCA	8 cut(s)	37, 166, 200, 212, 371, 426, 718, 756
HpyF10VI	GCNNNNNNNGC	4 cut(s)	108, 218, 568, 792
HpyF3I	CTNAG	2 cut(s)	407, 846
HpySE526I	ACGT	1 cut(s)	782
Hsp92I	GRCGYC	1 cut(s)	810
Hsp92II	CATG	7 cut(s)	116, 212, 236, 426, 495, 612, 874
Kzo9I	GATC	5 cut(s)	7, 28, 105, 451, 694
LmnI	GCTCC	4 cut(s)	288, 666, 709, 867
Lsp1109I	GCAGC	2 cut(s)	150, 184
LweI	GCATC	2 cut(s)	358, 743
MaeI	CTAG	1 cut(s)	443
MaeII	ACGT	1 cut(s)	782
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	5 cut(s)	9, 30, 107, 453, 696
MboI	GATC	5 cut(s)	7, 28, 105, 451, 694
MboII	GAAGA	4 cut(s)	227, 511, 568, 751
MflI	RGATCY	1 cut(s)	105
MhlI	GDGCHC	2 cut(s)	293, 788
MluCI	AATT	2 cut(s)	460, 769
Mph1103I	ATGCAT	1 cut(s)	373
MseI	TTAA	1 cut(s)	725
MspA1I	CMGCKG	1 cut(s)	653
MspI	CCGG	3 cut(s)	515, 553, 622
MspR9I	CCNGG	2 cut(s)	26, 515
MvaI	CCWGG	1 cut(s)	26
MwoI	GCNNNNNNNGC	4 cut(s)	108, 218, 568, 792
NciI	CCSGG	1 cut(s)	515
NcoI	CCATGG	3 cut(s)	112, 232, 491
NdeII	GATC	5 cut(s)	7, 28, 105, 451, 694
NlaIII	CATG	7 cut(s)	116, 212, 236, 426, 495, 612, 874
NlaIV	GGNNCC	3 cut(s)	107, 153, 290
NsiI	ATGCAT	1 cut(s)	373
NspI	RCATGY	2 cut(s)	212, 874
PaeR7I	CTCGAG	1 cut(s)	132
PfeI	GAWTC	2 cut(s)	398, 628
PinAI	ACCGGT	1 cut(s)	621
PkrI	GCNGC	3 cut(s)	165, 199, 655
PmaCI	CACGTG	1 cut(s)	783
PmlI	CACGTG	1 cut(s)	783
Ppu21I	YACGTR	1 cut(s)	783
PsiI	TTATAA	1 cut(s)	764
Psp6I	CCWGG	1 cut(s)	24
PspCI	CACGTG	1 cut(s)	783
PspEI	GGTNACC	1 cut(s)	82
PspGI	CCWGG	1 cut(s)	24
PspN4I	GGNNCC	3 cut(s)	107, 153, 290
PspPI	GGNCC	4 cut(s)	151, 353, 647, 733
PspXI	VCTCGAGB	1 cut(s)	132
PsuI	RGATCY	1 cut(s)	105
RsaI	GTAC	3 cut(s)	207, 476, 533
RsaNI	GTAC	3 cut(s)	206, 475, 532
SaqAI	TTAA	1 cut(s)	725
SatI	GCNGC	3 cut(s)	164, 198, 654
Sau3AI	GATC	5 cut(s)	7, 28, 105, 451, 694
Sau96I	GGNCC	4 cut(s)	151, 353, 647, 733
ScrFI	CCNGG	2 cut(s)	26, 515
SduI	GDGCHC	2 cut(s)	293, 788
SfaNI	GCATC	2 cut(s)	358, 743
SfcI	CTRYAG	3 cut(s)	138, 412, 546
Sfr274I	CTCGAG	1 cut(s)	132
SinI	GGWCC	4 cut(s)	151, 353, 647, 733
SlaI	CTCGAG	1 cut(s)	132
SmlI	CTYRAG	3 cut(s)	43, 132, 320
SmoI	CTYRAG	3 cut(s)	43, 132, 320
Sse9I	AATT	2 cut(s)	460, 769
SsiI	CCGC	3 cut(s)	109, 149, 653
SspI	AATATT	1 cut(s)	180
SspMI	CTAG	1 cut(s)	443
StyD4I	CCNGG	2 cut(s)	24, 513
StyI	CCWWGG	5 cut(s)	112, 155, 232, 491, 643
TaaI	ACNGT	3 cut(s)	241, 350, 689
TaiI	ACGT	1 cut(s)	785
TaqI	TCGA	3 cut(s)	6, 133, 673
TasI	AATT	2 cut(s)	460, 769
TatI	WGTACW	3 cut(s)	205, 474, 531
TauI	GCSGC	1 cut(s)	656
TfiI	GAWTC	2 cut(s)	398, 628
Tru1I	TTAA	1 cut(s)	725
Tru9I	TTAA	1 cut(s)	725
TseI	GCWGC	2 cut(s)	163, 197
TspDTI	ATGAA	2 cut(s)	591, 839
VpaK11BI	GGWCC	4 cut(s)	151, 353, 647, 733
XceI	RCATGY	2 cut(s)	212, 874
XhoI	CTCGAG	1 cut(s)	132
XmiI	GTMKAC	1 cut(s)	583
XspI	CTAG	1 cut(s)	443
Zsp2I	ATGCAT	1 cut(s)	373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.