Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0013888

Physical Location & Seq

Genomic Coordinates Reverse (-)

17886652 .. 17889070

Gene Structure 2419 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0191500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGCGGAAACAGAAGAGCTACCGGAAGAGATCATAGTGAATATCCTTACTTGGTTGCCCGTCAAGTCCTTAATCCGATTCACCTCCGTTTCAAAACGTCTGCGTTTCATTATACTGTCCGATCCCAAATTCGCCGAATCCCAACTTAAAGCGGCTCGTCAGCAGAAAACCCTCAGCCGCAGACTCCTCGTCTCCACCATTAACGCCCCTCCACTCGAACTCGAATCCATACACTTGGATGATACGCCGTCGTTTGGAGAGCCTTCCTCCGTTAGAAAGCTCAGTCTCCCTTTCCACCAGCAACCCGTTCGTTTTGTCAAGCTGCTGGGCTCCTGCAATGGTCTGGTATTTGTAGCTTTTGATGAGAAATTGTTTTATATCTGGAACCCATCGGTTAGATTCTTCAAGCAATTACCTGACCCCCCTGGATTTTCCTCATTTTTTTCTGTTACCTTTTCTGGTGTCGGCTGTGTGTCGGCCACCGATGACTACAAAGTTTTGGTGGCCTCCGTTTGGAAGACAGAGGTCTGGATGTTTTCATCGAGAGCTCGCGTTTGGAAGAGTATTCAAGTCGCTGGCTACTCCCCTGCCTTATATGCCACTGGTCACGGAATTCTTCTGAATGAGGCTCTTCATTGGGTGGAGGATGAATTCGATCATGAAATCCTTGTCTTTGATTTGTCACAGGAGGAGTTCAGGAAAATGCGTTTGCCTAATTTTCAGCAACGTCTTGGGTTCTTACCTGCGCTGCTCGGGGTTTCTTTTGGAGGATGCCTGTGTGTATGCCGTCGTCCCATCACTGGTTGTGACTCTGCCGATTTCTGGGTCATGAGAGAATATGACGTGCGTGGTGGTGACTCGTGGACTAAGCTTCTTAACTTAAAGCTGTCCGATCCTCCTCAGGGACCTATTATGGTTATGGAAAGCAGTATTATTGCCCAGAGATGGACTTCCGACGGGAGCTGTTTGGTAAATATTGATCAGAAAAAAGAAGAGAAGCTTGGCGTGATTCTGGGTAATTCGCTCAAGATGATACCATATGAGGAGAGTTTACTTCGGATTAGTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000104 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006119 GO:0006121 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009055 GO:0009060 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016020 GO:0016310 GO:0016491 GO:0016627 GO:0017144 GO:0019637 GO:0019693 GO:0022900 GO:0022904 GO:0032991 GO:0034641 GO:0042773 GO:0042775 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0045273 GO:0045281 GO:0045333 GO:0046034 GO:0046483 GO:0055086 GO:0055114 GO:0070469 GO:0071704 GO:0072521 GO:0098796 GO:0098803 GO:1901135 GO:1901360 GO:1901564 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00020 ko00190 ko01100 ko01110 ko01120 ko01130 ko01200 ko04714 ko04932 ko05010 ko05012 ko05016 map00020 map00190 map01100 map01110 map01120 map01130 map01200 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Fer2_3 Fer4_17 Fer4_8

Protein Analysis

356

Amino Acids

40.33

Weight (kDa)

6.55

Isoelectric Point (pI)

54.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	5 - 41	6e-07	F-box-like
F-box	PF00646	6 - 43	1.3e-08	F-box domain
b-prop_At3g26010-like	PF24750	77 - 239	4.2e-07	F-box protein At3g26010-like, beta-propeller
FBA_3	PF08268	90 - 281	1.1e-11	F-box associated beta propeller domain
FBA_1	PF07734	98 - 340	3.1e-16	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65165 AT5G65165
fragaria_vesca	FvH4_1g21120
prunus_persica	Prupe.6G182900_v2.0.a1 Prupe.6G183100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0114901
rosa_laevigata	RLG00000018133
rosa_multiflora	Rmu_sc0002764.1_g000022
rosa_roxburghii	Rroxscaffold_2G00130430
rosa_rugosa	Rorug02G0191500 Rorug02G0191600 Rorug02G0191600
rosa_samantha	Rh2AG250200 Rh2BG259800 Rh2CG254600 Rh2DG258300
rosa_wichuraiana	Rw2G019510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	751
AccII	CGCG	1 cut(s)	552
AciI	CCGC	3 cut(s)	5, 152, 178
AclWI	GGATC	2 cut(s)	116, 887
AcoI	YGGCCR	1 cut(s)	477
AcsI	RAATTY	3 cut(s)	128, 612, 650
AfiI	CCNNNNNNNGG	6 cut(s)	254, 513, 800, 822, 902, 945
AgsI	TTSAA	3 cut(s)	93, 406, 569
AhdI	GACNNNNNGTC	1 cut(s)	188
AjiI	CACGTC	1 cut(s)	844
AjnI	CCWGG	1 cut(s)	424
AjuI	GAANNNNNNNTTGG	2 cut(s)	984, 1016
AluBI	AGCT	9 cut(s)	19, 280, 322, 356, 548, 871, 886, 963, 1000
AluI	AGCT	9 cut(s)	19, 280, 322, 356, 548, 871, 886, 963, 1000
Alw21I	GWGCWC	1 cut(s)	550
Alw26I	GTCTC	2 cut(s)	196, 290
AlwI	GGATC	2 cut(s)	116, 887
Ama87I	CYCGRG	1 cut(s)	752
AoxI	GGCC	2 cut(s)	477, 504
ApeKI	GCWGC	2 cut(s)	322, 748
ApoI	RAATTY	3 cut(s)	128, 612, 650
AspLEI	GCGC	1 cut(s)	748
AspS9I	GGNCC	1 cut(s)	905
AsuHPI	GGTGA	2 cut(s)	73, 866
AvaI	CYCGRG	1 cut(s)	752
AvaII	GGWCC	1 cut(s)	905
AxyI	CCTNAGG	1 cut(s)	900
BanII	GRGCYC	2 cut(s)	332, 550
BauI	CACGAG	1 cut(s)	859
BbsI	GAAGAC	1 cut(s)	524
Bbv12I	GWGCWC	1 cut(s)	550
BbvCI	CCTCAGC	1 cut(s)	173
BbvI	GCAGC	2 cut(s)	309, 735
BccI	CCATC	3 cut(s)	397, 803, 939
BceAI	ACGGC	2 cut(s)	232, 771
BcgI	CGANNNNNNTGC	4 cut(s)	169, 203, 290, 324
BciT130I	CCWGG	1 cut(s)	426
BclI	TGATCA	1 cut(s)	979
BcoDI	GTCTC	2 cut(s)	196, 290
BfuAI	ACCTGC	1 cut(s)	751
BisI	GCNGC	4 cut(s)	153, 178, 323, 749
BlsI	GCNGC	4 cut(s)	154, 179, 324, 750
Bme1390I	CCNGG	1 cut(s)	426
Bme18I	GGWCC	1 cut(s)	905
BmeRI	GACNNNNNGTC	1 cut(s)	188
BmeT110I	CYCGRG	1 cut(s)	752
BmgBI	CACGTC	1 cut(s)	844
BmgT120I	GGNCC	1 cut(s)	905
BmiI	GGNNCC	3 cut(s)	331, 386, 906
BmrFI	CCNGG	1 cut(s)	426
BmsI	GCATC	1 cut(s)	761
BoxI	GACNNNNGTC	1 cut(s)	524
BpiI	GAAGAC	1 cut(s)	524
BplI	GAGNNNNNCTC	2 cut(s)	251, 283
Bpu10I	CCTNAGC	1 cut(s)	173
BpuEI	CTTGAG	1 cut(s)	1010
BsaJI	CCNNGG	1 cut(s)	424
BsaWI	WCCGGW	1 cut(s)	22
Bsc4I	CCNNNNNNNGG	6 cut(s)	254, 513, 800, 822, 902, 945
Bse1I	ACTGG	2 cut(s)	607, 805
Bse21I	CCTNAGG	1 cut(s)	900
Bse3DI	GCAATG	1 cut(s)	343
BseBI	CCWGG	1 cut(s)	426
BseDI	CCNNGG	1 cut(s)	424
BseGI	GGATG	4 cut(s)	244, 537, 652, 776
BseLI	CCNNNNNNNGG	6 cut(s)	254, 513, 800, 822, 902, 945
BseMI	GCAATG	1 cut(s)	343
BseMII	CTCAG	3 cut(s)	187, 295, 914
BseNI	ACTGG	2 cut(s)	607, 805
BseRI	GAGGAG	4 cut(s)	176, 704, 888, 1058
BseXI	GCAGC	2 cut(s)	309, 735
BseYI	CCCAGC	1 cut(s)	325
Bsh1236I	CGCG	1 cut(s)	552
BshFI	GGCC	2 cut(s)	479, 506
BsiHKAI	GWGCWC	1 cut(s)	550
BsiHKCI	CYCGRG	1 cut(s)	752
BsiSI	CCGG	1 cut(s)	23
BslFI	GGGAC	2 cut(s)	777, 918
BslI	CCNNNNNNNGG	6 cut(s)	254, 513, 800, 822, 902, 945
BsmAI	GTCTC	2 cut(s)	196, 290
BsmBI	CGTCTC	1 cut(s)	196
BsmFI	GGGAC	2 cut(s)	777, 918
BsnI	GGCC	2 cut(s)	479, 506
BsoBI	CYCGRG	1 cut(s)	752
Bsp1286I	GDGCHC	2 cut(s)	332, 550
Bsp143I	GATC	5 cut(s)	30, 121, 655, 892, 979
BspACI	CCGC	3 cut(s)	5, 152, 178
BspANI	GGCC	2 cut(s)	479, 506
BspCNI	CTCAG	3 cut(s)	186, 294, 913
BspFNI	CGCG	1 cut(s)	552
BspHI	TCATGA	2 cut(s)	658, 828
BspLI	GGNNCC	3 cut(s)	331, 386, 906
BspMI	ACCTGC	1 cut(s)	751
BspPI	GGATC	2 cut(s)	116, 887
BspQI	GCTCTTC	2 cut(s)	9, 636
BsrDI	GCAATG	1 cut(s)	343
BsrI	ACTGG	2 cut(s)	607, 805
BssECI	CCNNGG	1 cut(s)	424
BssMI	GATC	5 cut(s)	30, 121, 655, 892, 979
BssSI	CACGAG	1 cut(s)	859
Bst2BI	CACGAG	1 cut(s)	859
Bst2UI	CCWGG	1 cut(s)	426
Bst4CI	ACNGT	1 cut(s)	117
Bst6I	CTCTTC	5 cut(s)	9, 21, 554, 636, 987
BstC8I	GCNNGC	2 cut(s)	550, 577
BstDEI	CTNAG	4 cut(s)	173, 281, 867, 900
BstF5I	GGATG	4 cut(s)	244, 537, 652, 776
BstFNI	CGCG	1 cut(s)	552
BstHHI	GCGC	1 cut(s)	748
BstKTI	GATC	5 cut(s)	33, 124, 658, 895, 982
BstMAI	GTCTC	2 cut(s)	196, 290
BstMBI	GATC	5 cut(s)	30, 121, 655, 892, 979
BstMWI	GCNNNNNNNGC	1 cut(s)	596
BstNI	CCWGG	1 cut(s)	426
BstPAI	GACNNNNGTC	1 cut(s)	524
BstSCI	CCNGG	1 cut(s)	424
BstUI	CGCG	1 cut(s)	552
BstV1I	GCAGC	2 cut(s)	309, 735
BstV2I	GAAGAC	1 cut(s)	524
BstXI	CCANNNNNNTGG	1 cut(s)	235
Bsu36I	CCTNAGG	1 cut(s)	900
BsuRI	GGCC	2 cut(s)	479, 506
BtrI	CACGTC	1 cut(s)	844
BtsCI	GGATG	4 cut(s)	244, 537, 652, 776
BtsIMutI	CAGTG	2 cut(s)	600, 798
BveI	ACCTGC	1 cut(s)	751
Cac8I	GCNNGC	2 cut(s)	550, 577
CciI	TCATGA	2 cut(s)	658, 828
CfoI	GCGC	1 cut(s)	748
Cfr13I	GGNCC	1 cut(s)	905
CviAII	CATG	2 cut(s)	659, 829
DdeI	CTNAG	4 cut(s)	173, 281, 867, 900
DpnI	GATC	5 cut(s)	32, 123, 657, 894, 981
DpnII	GATC	5 cut(s)	30, 121, 655, 892, 979
DriI	GACNNNNNGTC	1 cut(s)	188
EaeI	YGGCCR	1 cut(s)	477
Eam1104I	CTCTTC	5 cut(s)	9, 21, 554, 636, 987
Eam1105I	GACNNNNNGTC	1 cut(s)	188
EarI	CTCTTC	5 cut(s)	9, 21, 554, 636, 987
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	548
Eco24I	GRGCYC	2 cut(s)	332, 550
Eco47I	GGWCC	1 cut(s)	905
Eco53kI	GAGCTC	1 cut(s)	548
Eco81I	CCTNAGG	1 cut(s)	900
Eco88I	CYCGRG	1 cut(s)	752
EcoICRI	GAGCTC	1 cut(s)	548
EcoO109I	RGGNCCY	1 cut(s)	905
EcoRI	GAATTC	2 cut(s)	612, 650
EcoRII	CCWGG	1 cut(s)	424
EcoT38I	GRGCYC	2 cut(s)	332, 550
Esp3I	CGTCTC	1 cut(s)	196
FaeI	CATG	2 cut(s)	662, 832
FalI	AAGNNNNNCTT	2 cut(s)	984, 1016
FaqI	GGGAC	2 cut(s)	777, 918
FatI	CATG	2 cut(s)	658, 828
FauNDI	CATATG	1 cut(s)	1039
FbaI	TGATCA	1 cut(s)	979
Fnu4HI	GCNGC	4 cut(s)	153, 178, 323, 749
FokI	GGATG	4 cut(s)	251, 544, 659, 783
FriOI	GRGCYC	2 cut(s)	332, 550
Fsp4HI	GCNGC	4 cut(s)	153, 178, 323, 749
GlaI	GCGC	1 cut(s)	747
GluI	GCNGC	4 cut(s)	153, 178, 323, 749
GsaI	CCCAGC	1 cut(s)	329
HaeIII	GGCC	2 cut(s)	479, 506
HapII	CCGG	1 cut(s)	23
HhaI	GCGC	1 cut(s)	748
Hin1II	CATG	2 cut(s)	662, 832
Hin6I	GCGC	1 cut(s)	746
HinP1I	GCGC	1 cut(s)	746
HindIII	AAGCTT	2 cut(s)	869, 998
HinfI	GANTC	8 cut(s)	78, 137, 183, 224, 399, 809, 857, 1009
HpaII	CCGG	1 cut(s)	23
HphI	GGTGA	2 cut(s)	73, 866
Hpy166II	GTNNAC	2 cut(s)	864, 1052
Hpy188I	TCNGA	7 cut(s)	77, 121, 621, 892, 955, 984, 1059
Hpy188III	TCNNGA	7 cut(s)	382, 529, 543, 659, 697, 829, 1027
Hpy8I	GTNNAC	2 cut(s)	864, 1052
Hpy99I	CGWCG	3 cut(s)	253, 792, 959
HpyAV	CCTTC	1 cut(s)	273
HpyCH4III	ACNGT	1 cut(s)	117
HpyCH4IV	ACGT	3 cut(s)	97, 727, 843
HpyCH4V	TGCA	1 cut(s)	336
HpyF10VI	GCNNNNNNNGC	1 cut(s)	596
HpyF3I	CTNAG	4 cut(s)	173, 281, 867, 900
HpySE526I	ACGT	3 cut(s)	97, 727, 843
Hsp92II	CATG	2 cut(s)	662, 832
HspAI	GCGC	1 cut(s)	746
Ksp22I	TGATCA	1 cut(s)	979
Kzo9I	GATC	5 cut(s)	30, 121, 655, 892, 979
LguI	GCTCTTC	2 cut(s)	9, 636
LmnI	GCTCC	2 cut(s)	335, 960
Lsp1109I	GCAGC	2 cut(s)	309, 735
LweI	GCATC	1 cut(s)	761
MaeII	ACGT	3 cut(s)	97, 727, 843
MaeIII	GTNAC	5 cut(s)	448, 605, 681, 806, 854
MalI	GATC	5 cut(s)	32, 123, 657, 894, 981
MboI	GATC	5 cut(s)	30, 121, 655, 892, 979
MboII	GAAGA	8 cut(s)	26, 38, 394, 529, 571, 608, 623, 1004
MhlI	GDGCHC	2 cut(s)	332, 550
MluCI	AATT	7 cut(s)	128, 368, 410, 612, 650, 715, 1018
MlyI	GAGTC	3 cut(s)	177, 803, 851
MmeI	TCCRAC	1 cut(s)	978
MseI	TTAA	5 cut(s)	71, 147, 201, 876, 881
MslI	CAYNNNNRTG	1 cut(s)	237
MspI	CCGG	1 cut(s)	23
MspR9I	CCNGG	1 cut(s)	426
MvaI	CCWGG	1 cut(s)	426
MvnI	CGCG	1 cut(s)	552
MwoI	GCNNNNNNNGC	1 cut(s)	596
NdeI	CATATG	1 cut(s)	1039
NdeII	GATC	5 cut(s)	30, 121, 655, 892, 979
NlaIII	CATG	2 cut(s)	662, 832
NlaIV	GGNNCC	3 cut(s)	331, 386, 906
NmuCI	GTSAC	4 cut(s)	605, 681, 806, 854
PagI	TCATGA	2 cut(s)	658, 828
PciSI	GCTCTTC	2 cut(s)	9, 636
PfeI	GAWTC	5 cut(s)	78, 137, 224, 399, 1009
PkrI	GCNGC	4 cut(s)	154, 179, 324, 750
PleI	GAGTC	3 cut(s)	177, 803, 851
PpsI	GAGTC	3 cut(s)	177, 803, 851
PpuMI	RGGWCCY	1 cut(s)	905
PshAI	GACNNNNGTC	1 cut(s)	524
Psp124BI	GAGCTC	1 cut(s)	550
Psp5II	RGGWCCY	1 cut(s)	905
Psp6I	CCWGG	1 cut(s)	424
PspFI	CCCAGC	1 cut(s)	325
PspGI	CCWGG	1 cut(s)	424
PspN4I	GGNNCC	3 cut(s)	331, 386, 906
PspPI	GGNCC	1 cut(s)	905
PspPPI	RGGWCCY	1 cut(s)	905
RseI	CAYNNNNRTG	1 cut(s)	237
SacI	GAGCTC	1 cut(s)	550
SapI	GCTCTTC	2 cut(s)	9, 636
SaqAI	TTAA	5 cut(s)	71, 147, 201, 876, 881
SatI	GCNGC	4 cut(s)	153, 178, 323, 749
Sau3AI	GATC	5 cut(s)	30, 121, 655, 892, 979
Sau96I	GGNCC	1 cut(s)	905
SchI	GAGTC	3 cut(s)	177, 803, 851
ScrFI	CCNGG	1 cut(s)	426
SduI	GDGCHC	2 cut(s)	332, 550
SfaNI	GCATC	1 cut(s)	761
SinI	GGWCC	1 cut(s)	905
SmiMI	CAYNNNNRTG	1 cut(s)	237
SmlI	CTYRAG	1 cut(s)	1025
SmoI	CTYRAG	1 cut(s)	1025
Sse9I	AATT	7 cut(s)	128, 368, 410, 612, 650, 715, 1018
SsiI	CCGC	3 cut(s)	5, 152, 178
SspI	AATATT	1 cut(s)	976
SstI	GAGCTC	1 cut(s)	550
StyD4I	CCNGG	1 cut(s)	424
TaaI	ACNGT	1 cut(s)	117
TaiI	ACGT	3 cut(s)	100, 730, 846
TaqI	TCGA	4 cut(s)	216, 222, 542, 654
TasI	AATT	7 cut(s)	128, 368, 410, 612, 650, 715, 1018
TauI	GCSGC	2 cut(s)	155, 180
TfiI	GAWTC	5 cut(s)	78, 137, 224, 399, 1009
Tru1I	TTAA	5 cut(s)	71, 147, 201, 876, 881
Tru9I	TTAA	5 cut(s)	71, 147, 201, 876, 881
TscAI	CASTG	2 cut(s)	607, 805
TseFI	GTSAC	4 cut(s)	605, 681, 806, 854
TseI	GCWGC	2 cut(s)	322, 748
Tsp45I	GTSAC	4 cut(s)	605, 681, 806, 854
TspDTI	ATGAA	5 cut(s)	97, 528, 623, 663, 675
TspGWI	ACGGA	4 cut(s)	76, 259, 499, 624
TspRI	CASTG	2 cut(s)	607, 805
VpaK11BI	GGWCC	1 cut(s)	905
XapI	RAATTY	3 cut(s)	128, 612, 650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.