Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002764.1

Orthogroup ID

OG0013888

Physical Location & Seq

Genomic Coordinates Reverse (-)

72568 .. 73491

Gene Structure 924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002764.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

atgtgctctgaagaaaatgaaggaaactcgggaggatttcatatctcttcgaacctgaatgtttttgccccttttgtaagactagaagaagcccaagtcgaggcccaatttgatctcggtgacaagtttagagacaactgtgcaaagcagcaagactttccaatattgaaaggacaccctgctgcacaagtacatgcagaagaggcttttgagacccatgaaactgtcagaagcagaaacaaagttctaaaggagttcaagatttacagatggagccccgaccatcccgacaacaagccttacctcaagtcttactttgtgaacctcaacaactgtggtccaatggttttggatgcattacagaggataaaagcagaggatgattcaaccctgagctataggaggtcatgcagagaaggagtatgtgggtcatgtgccatgaatattgatggaaccaacaccgtggcctgtctcagacccattgatgcagacacttcaacagccacaactataactccgctgcctcgtatgtttgtgatcaaagatctagttgttgatctcactaatttctacctgcagtacaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000104 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006119 GO:0006121 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009055 GO:0009060 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016020 GO:0016310 GO:0016491 GO:0016627 GO:0017144 GO:0019637 GO:0019693 GO:0022900 GO:0022904 GO:0032991 GO:0034641 GO:0042773 GO:0042775 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0045273 GO:0045281 GO:0045333 GO:0046034 GO:0046483 GO:0055086 GO:0055114 GO:0070469 GO:0071704 GO:0072521 GO:0098796 GO:0098803 GO:1901135 GO:1901360 GO:1901564 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00020 ko00190 ko01100 ko01110 ko01120 ko01130 ko01200 ko04714 ko04932 ko05010 ko05012 ko05016 map00020 map00190 map01100 map01110 map01120 map01130 map01200 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Fer2_3 Fer4_17 Fer4_8

Protein Analysis

195

Amino Acids

22.06

Weight (kDa)

5.55

Isoelectric Point (pI)

47.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65165 AT5G65165
fragaria_vesca	FvH4_1g21120
prunus_persica	Prupe.6G182900_v2.0.a1 Prupe.6G183100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0114901
rosa_laevigata	RLG00000018133
rosa_multiflora	Rmu_sc0002764.1_g000022
rosa_roxburghii	Rroxscaffold_2G00130430
rosa_rugosa	Rorug02G0191500 Rorug02G0191600 Rorug02G0191600
rosa_samantha	Rh2AG250200 Rh2BG259800 Rh2CG254600 Rh2DG258300
rosa_wichuraiana	Rw2G019510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	582
AciI	CCGC	1 cut(s)	518
AcuI	CTGAAG	1 cut(s)	30
AfaI	GTAC	2 cut(s)	192, 581
AfiI	CCNNNNNNNGG	1 cut(s)	100
AgsI	TTSAA	4 cut(s)	169, 259, 387, 498
AluBI	AGCT	1 cut(s)	396
AluI	AGCT	1 cut(s)	396
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	3 cut(s)	126, 206, 476
Ama87I	CYCGRG	1 cut(s)	28
AoxI	GGCC	2 cut(s)	102, 465
ApeKI	GCWGC	3 cut(s)	148, 182, 520
AspS9I	GGNCC	2 cut(s)	103, 338
AsuHPI	GGTGA	1 cut(s)	131
AsuII	TTCGAA	1 cut(s)	50
AvaI	CYCGRG	1 cut(s)	28
AvaII	GGWCC	1 cut(s)	338
BanII	GRGCYC	1 cut(s)	278
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	3 cut(s)	160, 169, 507
BccI	CCATC	3 cut(s)	264, 291, 443
BclI	TGATCA	1 cut(s)	537
BcoDI	GTCTC	3 cut(s)	126, 206, 476
BfaI	CTAG	2 cut(s)	83, 548
BfmI	CTRYAG	2 cut(s)	397, 575
BfuAI	ACCTGC	1 cut(s)	582
BglII	AGATCT	1 cut(s)	544
BisI	GCNGC	3 cut(s)	149, 183, 521
BlsI	GCNGC	3 cut(s)	150, 184, 522
Bme18I	GGWCC	1 cut(s)	338
BmeT110I	CYCGRG	1 cut(s)	28
BmgT120I	GGNCC	2 cut(s)	103, 338
BmiI	GGNNCC	2 cut(s)	275, 454
BmsI	GCATC	2 cut(s)	343, 475
Bpu10I	CCTNAGC	1 cut(s)	392
Bpu14I	TTCGAA	1 cut(s)	50
BpuEI	CTTGAG	1 cut(s)	290
BsaI	GGTCTC	1 cut(s)	206
BsaJI	CCNNGG	1 cut(s)	462
BsaXI	ACNNNNNCTCC	2 cut(s)	499, 529
Bsc4I	CCNNNNNNNGG	1 cut(s)	100
BseDI	CCNNGG	1 cut(s)	462
BseGI	GGATG	3 cut(s)	283, 358, 385
BseLI	CCNNNNNNNGG	1 cut(s)	100
BseMII	CTCAG	2 cut(s)	383, 487
BseXI	GCAGC	3 cut(s)	160, 169, 507
BsgI	GTGCAG	1 cut(s)	168
BshFI	GGCC	2 cut(s)	104, 467
BsiHKAI	GWGCWC	1 cut(s)	8
BsiHKCI	CYCGRG	1 cut(s)	28
BslI	CCNNNNNNNGG	1 cut(s)	100
BsmAI	GTCTC	3 cut(s)	126, 206, 476
BsnI	GGCC	2 cut(s)	104, 467
Bso31I	GGTCTC	1 cut(s)	206
BsoBI	CYCGRG	1 cut(s)	28
Bsp119I	TTCGAA	1 cut(s)	50
Bsp1286I	GDGCHC	2 cut(s)	8, 278
Bsp143I	GATC	4 cut(s)	112, 537, 544, 556
BspACI	CCGC	1 cut(s)	518
BspANI	GGCC	2 cut(s)	104, 467
BspCNI	CTCAG	2 cut(s)	384, 486
BspLI	GGNNCC	2 cut(s)	275, 454
BspMAI	CTGCAG	1 cut(s)	579
BspMI	ACCTGC	1 cut(s)	582
BspT104I	TTCGAA	1 cut(s)	50
BspTNI	GGTCTC	1 cut(s)	206
BssECI	CCNNGG	1 cut(s)	462
BssMI	GATC	4 cut(s)	112, 537, 544, 556
Bst4CI	ACNGT	4 cut(s)	140, 226, 335, 463
Bst6I	CTCTTC	2 cut(s)	52, 195
BstBI	TTCGAA	1 cut(s)	50
BstDEI	CTNAG	2 cut(s)	392, 473
BstDSI	CCRYGG	1 cut(s)	462
BstF5I	GGATG	3 cut(s)	283, 358, 385
BstKTI	GATC	4 cut(s)	115, 540, 547, 559
BstMAI	GTCTC	3 cut(s)	126, 206, 476
BstMBI	GATC	4 cut(s)	112, 537, 544, 556
BstMWI	GCNNNNNNNGC	1 cut(s)	203
BstNSI	RCATGY	1 cut(s)	197
BstSFI	CTRYAG	2 cut(s)	397, 575
BstV1I	GCAGC	3 cut(s)	160, 169, 507
BstX2I	RGATCY	1 cut(s)	544
BstXI	CCANNNNNNTGG	1 cut(s)	463
BstYI	RGATCY	1 cut(s)	544
BsuRI	GGCC	2 cut(s)	104, 467
BtgI	CCRYGG	1 cut(s)	462
BtsCI	GGATG	3 cut(s)	283, 358, 385
BveI	ACCTGC	1 cut(s)	582
Cfr13I	GGNCC	2 cut(s)	103, 338
Csp6I	GTAC	2 cut(s)	191, 580
CspCI	CAANNNNNGTGG	2 cut(s)	316, 351
CviAII	CATG	5 cut(s)	194, 218, 408, 432, 439
CviJI	RGCY	8 cut(s)	92, 104, 206, 276, 298, 396, 467, 503
CviKI_1	RGCY	8 cut(s)	92, 104, 206, 276, 298, 396, 467, 503
CviQI	GTAC	2 cut(s)	191, 580
DdeI	CTNAG	2 cut(s)	392, 473
DpnI	GATC	4 cut(s)	114, 539, 546, 558
DpnII	GATC	4 cut(s)	112, 537, 544, 556
Eam1104I	CTCTTC	2 cut(s)	52, 195
EarI	CTCTTC	2 cut(s)	52, 195
Eco24I	GRGCYC	1 cut(s)	278
Eco31I	GGTCTC	1 cut(s)	206
Eco47I	GGWCC	1 cut(s)	338
Eco57I	CTGAAG	1 cut(s)	30
Eco88I	CYCGRG	1 cut(s)	28
EcoT22I	ATGCAT	1 cut(s)	358
EcoT38I	GRGCYC	1 cut(s)	278
FaeI	CATG	5 cut(s)	197, 221, 411, 435, 442
FalI	AAGNNNNNCTT	2 cut(s)	299, 331
FatI	CATG	5 cut(s)	193, 217, 407, 431, 438
FbaI	TGATCA	1 cut(s)	537
Fnu4HI	GCNGC	3 cut(s)	149, 183, 521
FokI	GGATG	3 cut(s)	270, 365, 392
FriOI	GRGCYC	1 cut(s)	278
Fsp4HI	GCNGC	3 cut(s)	149, 183, 521
FspBI	CTAG	2 cut(s)	83, 548
GluI	GCNGC	3 cut(s)	149, 183, 521
HaeIII	GGCC	2 cut(s)	104, 467
Hin1II	CATG	5 cut(s)	197, 221, 411, 435, 442
HinfI	GANTC	1 cut(s)	383
HphI	GGTGA	1 cut(s)	131
Hpy166II	GTNNAC	1 cut(s)	322
Hpy188I	TCNGA	3 cut(s)	10, 230, 476
Hpy188III	TCNNGA	3 cut(s)	30, 259, 287
Hpy8I	GTNNAC	1 cut(s)	322
HpyAV	CCTTC	2 cut(s)	14, 410
HpyCH4III	ACNGT	4 cut(s)	140, 226, 335, 463
HpyCH4V	TGCA	7 cut(s)	143, 185, 197, 356, 411, 488, 577
HpyF10VI	GCNNNNNNNGC	1 cut(s)	203
HpyF3I	CTNAG	2 cut(s)	392, 473
Hsp92II	CATG	5 cut(s)	197, 221, 411, 435, 442
Ksp22I	TGATCA	1 cut(s)	537
Kzo9I	GATC	4 cut(s)	112, 537, 544, 556
LmnI	GCTCC	1 cut(s)	273
LpnPI	CCDG	4 cut(s)	68, 192, 404, 481
Lsp1109I	GCAGC	3 cut(s)	160, 169, 507
LweI	GCATC	2 cut(s)	343, 475
MaeI	CTAG	2 cut(s)	83, 548
MaeIII	GTNAC	1 cut(s)	119
MalI	GATC	4 cut(s)	114, 539, 546, 558
MboI	GATC	4 cut(s)	112, 537, 544, 556
MboII	GAAGA	4 cut(s)	23, 39, 98, 212
MflI	RGATCY	1 cut(s)	544
MhlI	GDGCHC	2 cut(s)	8, 278
MluCI	AATT	2 cut(s)	107, 565
MnlI	CCTC	9 cut(s)	26, 94, 196, 314, 335, 357, 370, 396, 534
Mph1103I	ATGCAT	1 cut(s)	358
MspA1I	CMGCKG	1 cut(s)	520
MwoI	GCNNNNNNNGC	1 cut(s)	203
NdeII	GATC	4 cut(s)	112, 537, 544, 556
NlaIII	CATG	5 cut(s)	197, 221, 411, 435, 442
NlaIV	GGNNCC	2 cut(s)	275, 454
NmuCI	GTSAC	1 cut(s)	119
NsiI	ATGCAT	1 cut(s)	358
NspI	RCATGY	1 cut(s)	197
NspV	TTCGAA	1 cut(s)	50
PfeI	GAWTC	1 cut(s)	383
PkrI	GCNGC	3 cut(s)	150, 184, 522
PspN4I	GGNNCC	2 cut(s)	275, 454
PspPI	GGNCC	2 cut(s)	103, 338
PstI	CTGCAG	1 cut(s)	579
PsuI	RGATCY	1 cut(s)	544
RsaI	GTAC	2 cut(s)	192, 581
RsaNI	GTAC	2 cut(s)	191, 580
SatI	GCNGC	3 cut(s)	149, 183, 521
Sau3AI	GATC	4 cut(s)	112, 537, 544, 556
Sau96I	GGNCC	2 cut(s)	103, 338
SduI	GDGCHC	2 cut(s)	8, 278
SetI	ASST	6 cut(s)	57, 306, 327, 398, 407, 576
SfaNI	GCATC	2 cut(s)	343, 475
SfcI	CTRYAG	2 cut(s)	397, 575
SfuI	TTCGAA	1 cut(s)	50
SinI	GGWCC	1 cut(s)	338
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
Sse9I	AATT	2 cut(s)	107, 565
SsiI	CCGC	1 cut(s)	518
SspI	AATATT	2 cut(s)	165, 445
SspMI	CTAG	2 cut(s)	83, 548
TaaI	ACNGT	4 cut(s)	140, 226, 335, 463
TaqI	TCGA	2 cut(s)	50, 99
TasI	AATT	2 cut(s)	107, 565
TatI	WGTACW	2 cut(s)	190, 579
TfiI	GAWTC	1 cut(s)	383
TseFI	GTSAC	1 cut(s)	119
TseI	GCWGC	3 cut(s)	148, 182, 520
Tsp45I	GTSAC	1 cut(s)	119
TspDTI	ATGAA	4 cut(s)	29, 33, 234, 455
VpaK11BI	GGWCC	1 cut(s)	338
XceI	RCATGY	1 cut(s)	197
XspI	CTAG	2 cut(s)	83, 548
Zsp2I	ATGCAT	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.