Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0013888

Physical Location & Seq

Genomic Coordinates Forward (+)

27049760 .. 27055794

Gene Structure 6035 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG254600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGTCGATCATTTCTGCAGTCGCCTGGATCATTTGCAAAAGTTGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGGTAACCGAGATGTCAAAGAGCTGGATCCGCCATGGCTACAACAAAGTAGCTCGAGCTGTAGGCAAAGCGGACCCAAAGAAGCAGCAAGACATTCCAATATTGAAAGGACACCCTGCTGCACAAGTACATGCAGAAGAGGCTCTTGAGACCCATGAAACTGTCAGAAGCAGAAACAAAGTTCTAAAGGAGTTCAAGATTTACAGATGGAGCCCCGACCATCCCGACAACAAGCCTTACCTCAAGTCTTACTTTGTGAACCTCAACAACTGTGGTCCAATGGTTTTGGATGCATTACAGAGGATAAAAGCAGAGGATGATTCAACCCTGAGCTATAGGAGGTCATGCAGAGAAGGAATATGTGGGTCATGTGCCATGAATATTGATGGAACCAACACCGTGGCCTGTCTCAGACCCATTGATGCAGACACTTCAACAGCCACAACTATAACTCCGCTGCCTCATATGTTTGTGATCAAAGATCTAGTTGTTGATCTCACTAATTTCTACCTGCAGTACAAGTTGATTGAACCATGGCTGAAGACTAAAAAGCCCCCAAAGGATGGTCGGGAGTACAAGCAATCGCCTGCAGACCGGAAGAAGCTTGACGGGCTTTATGAATGTATACTTTGTGCTTGTTGTTCTACCTCATGCCCTTCCTACTGGTGGAATCCGGAGGAGTTCCTTGGACCAGCGGCTTTGCTCCATGCTTATCGATGGATATCTGACAGTCGGGATCAGTCCACAGAGGAGCGATTGCAGTCATTAACAGAGGACCAGAAGGGCTATATAGATGCAACATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000104 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006119 GO:0006121 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009055 GO:0009060 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016020 GO:0016310 GO:0016491 GO:0016627 GO:0017144 GO:0019637 GO:0019693 GO:0022900 GO:0022904 GO:0032991 GO:0034641 GO:0042773 GO:0042775 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0045273 GO:0045281 GO:0045333 GO:0046034 GO:0046483 GO:0055086 GO:0055114 GO:0070469 GO:0071704 GO:0072521 GO:0098796 GO:0098803 GO:1901135 GO:1901360 GO:1901564 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00020 ko00190 ko01100 ko01110 ko01120 ko01130 ko01200 ko04714 ko04932 ko05010 ko05012 ko05016 map00020 map00190 map01100 map01110 map01120 map01130 map01200 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Fer2_3 Fer4_17 Fer4_8

Protein Analysis

292

Amino Acids

33.71

Weight (kDa)

7.95

Isoelectric Point (pI)

54.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fer2_3	PF13085	89 - 193	6.6e-33	2Fe-2S iron-sulfur cluster binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0013888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65165 AT5G65165
fragaria_vesca	FvH4_1g21120
prunus_persica	Prupe.6G182900_v2.0.a1 Prupe.6G183100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0114901
rosa_laevigata	RLG00000018133
rosa_multiflora	Rmu_sc0002764.1_g000022
rosa_roxburghii	Rroxscaffold_2G00130430
rosa_rugosa	Rorug02G0191500 Rorug02G0191600 Rorug02G0191600
rosa_samantha	Rh2AG250200 Rh2BG259800 Rh2CG254600 Rh2DG258300
rosa_wichuraiana	Rw2G019510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	877
Acc36I	ACCTGC	1 cut(s)	591
AccB7I	CCANNNNNTGG	1 cut(s)	635
AccI	GTMKAC	1 cut(s)	697
AccIII	TCCGGA	1 cut(s)	745
AciI	CCGC	4 cut(s)	103, 143, 527, 767
AclWI	GGATC	4 cut(s)	36, 94, 107, 816
AcuI	CTGAAG	1 cut(s)	632
AfaI	GTAC	3 cut(s)	201, 590, 647
AfiI	CCNNNNNNNGG	2 cut(s)	635, 738
AgsI	TTSAA	5 cut(s)	178, 268, 396, 507, 602
AjnI	CCWGG	1 cut(s)	24
AluBI	AGCT	5 cut(s)	96, 125, 131, 405, 676
AluI	AGCT	5 cut(s)	96, 125, 131, 405, 676
Alw26I	GTCTC	2 cut(s)	215, 485
AlwI	GGATC	4 cut(s)	36, 94, 107, 816
Ama87I	CYCGRG	1 cut(s)	126
Aor13HI	TCCGGA	1 cut(s)	745
AoxI	GGCC	1 cut(s)	474
ApeKI	GCWGC	3 cut(s)	157, 191, 529
AspS9I	GGNCC	4 cut(s)	145, 347, 761, 847
AvaI	CYCGRG	1 cut(s)	126
AvaII	GGWCC	4 cut(s)	145, 347, 761, 847
BamHI	GGATCC	1 cut(s)	99
BanII	GRGCYC	1 cut(s)	287
BbsI	GAAGAC	1 cut(s)	620
BbvI	GCAGC	3 cut(s)	169, 178, 516
BccI	CCATC	5 cut(s)	273, 300, 452, 629, 783
BciT130I	CCWGG	1 cut(s)	26
BclI	TGATCA	1 cut(s)	546
BcoDI	GTCTC	2 cut(s)	215, 485
BfaI	CTAG	1 cut(s)	557
BfmI	CTRYAG	5 cut(s)	16, 132, 406, 584, 660
BfuAI	ACCTGC	1 cut(s)	591
BglII	AGATCT	1 cut(s)	553
BisI	GCNGC	4 cut(s)	158, 192, 530, 768
BlsI	GCNGC	4 cut(s)	159, 193, 531, 769
Bme1390I	CCNGG	1 cut(s)	26
Bme18I	GGWCC	4 cut(s)	145, 347, 761, 847
BmeT110I	CYCGRG	1 cut(s)	126
BmgT120I	GGNCC	4 cut(s)	145, 347, 761, 847
BmiI	GGNNCC	4 cut(s)	101, 147, 284, 463
BmrFI	CCNGG	1 cut(s)	26
BmsI	GCATC	3 cut(s)	352, 484, 856
BpiI	GAAGAC	1 cut(s)	620
Bpu10I	CCTNAGC	1 cut(s)	401
BpuEI	CTTGAG	2 cut(s)	239, 299
Bsa29I	ATCGAT	1 cut(s)	787
BsaBI	GATNNNNATC	1 cut(s)	793
BsaI	GGTCTC	1 cut(s)	215
BsaJI	CCNNGG	4 cut(s)	106, 471, 605, 757
BsaWI	WCCGGW	2 cut(s)	666, 745
BsaXI	ACNNNNNCTCC	2 cut(s)	508, 538
Bsc4I	CCNNNNNNNGG	2 cut(s)	635, 738
Bse1I	ACTGG	1 cut(s)	740
Bse8I	GATNNNNATC	1 cut(s)	793
BseAI	TCCGGA	1 cut(s)	745
BseBI	CCWGG	1 cut(s)	26
BseCI	ATCGAT	1 cut(s)	787
BseDI	CCNNGG	4 cut(s)	106, 471, 605, 757
BseGI	GGATG	4 cut(s)	292, 367, 394, 640
BseJI	GATNNNNATC	1 cut(s)	793
BseLI	CCNNNNNNNGG	2 cut(s)	635, 738
BseMII	CTCAG	2 cut(s)	392, 496
BseNI	ACTGG	1 cut(s)	740
BseRI	GAGGAG	2 cut(s)	764, 836
BseXI	GCAGC	3 cut(s)	169, 178, 516
BsgI	GTGCAG	1 cut(s)	177
BshFI	GGCC	1 cut(s)	476
BshVI	ATCGAT	1 cut(s)	787
BsiHKCI	CYCGRG	1 cut(s)	126
BsiSI	CCGG	2 cut(s)	667, 746
BslI	CCNNNNNNNGG	2 cut(s)	635, 738
BsmAI	GTCTC	2 cut(s)	215, 485
BsnI	GGCC	1 cut(s)	476
Bso31I	GGTCTC	1 cut(s)	215
BsoBI	CYCGRG	1 cut(s)	126
Bsp1286I	GDGCHC	1 cut(s)	287
Bsp13I	TCCGGA	1 cut(s)	745
Bsp143I	GATC	7 cut(s)	7, 28, 99, 546, 553, 565, 808
Bsp19I	CCATGG	2 cut(s)	106, 605
BspACI	CCGC	4 cut(s)	103, 143, 527, 767
BspANI	GGCC	1 cut(s)	476
BspCNI	CTCAG	2 cut(s)	393, 495
BspDI	ATCGAT	1 cut(s)	787
BspEI	TCCGGA	1 cut(s)	745
BspLI	GGNNCC	4 cut(s)	101, 147, 284, 463
BspMAI	CTGCAG	3 cut(s)	20, 588, 664
BspMI	ACCTGC	1 cut(s)	591
BspPI	GGATC	4 cut(s)	36, 94, 107, 816
BspTNI	GGTCTC	1 cut(s)	215
BsrI	ACTGG	1 cut(s)	740
BssECI	CCNNGG	4 cut(s)	106, 471, 605, 757
BssMI	GATC	7 cut(s)	7, 28, 99, 546, 553, 565, 808
BssNAI	GTATAC	1 cut(s)	698
BssT1I	CCWWGG	3 cut(s)	106, 605, 757
Bst1107I	GTATAC	1 cut(s)	698
Bst2UI	CCWGG	1 cut(s)	26
Bst4CI	ACNGT	4 cut(s)	235, 344, 472, 803
Bst6I	CTCTTC	1 cut(s)	204
BstC8I	GCNNGC	1 cut(s)	660
BstDEI	CTNAG	2 cut(s)	401, 482
BstDSI	CCRYGG	3 cut(s)	106, 471, 605
BstEII	GGTNACC	1 cut(s)	76
BstF5I	GGATG	4 cut(s)	292, 367, 394, 640
BstKTI	GATC	7 cut(s)	10, 31, 102, 549, 556, 568, 811
BstMAI	GTCTC	2 cut(s)	215, 485
BstMBI	GATC	7 cut(s)	7, 28, 99, 546, 553, 565, 808
BstMWI	GCNNNNNNNGC	3 cut(s)	102, 212, 682
BstNI	CCWGG	1 cut(s)	26
BstNSI	RCATGY	1 cut(s)	206
BstPI	GGTNACC	1 cut(s)	76
BstSCI	CCNGG	1 cut(s)	24
BstSFI	CTRYAG	5 cut(s)	16, 132, 406, 584, 660
BstV1I	GCAGC	3 cut(s)	169, 178, 516
BstV2I	GAAGAC	1 cut(s)	620
BstX2I	RGATCY	2 cut(s)	99, 553
BstXI	CCANNNNNNTGG	1 cut(s)	472
BstYI	RGATCY	2 cut(s)	99, 553
BstZ17I	GTATAC	1 cut(s)	698
Bsu15I	ATCGAT	1 cut(s)	787
BsuRI	GGCC	1 cut(s)	476
BsuTUI	ATCGAT	1 cut(s)	787
BtgI	CCRYGG	3 cut(s)	106, 471, 605
BtsCI	GGATG	4 cut(s)	292, 367, 394, 640
BveI	ACCTGC	1 cut(s)	591
Cac8I	GCNNGC	1 cut(s)	660
Cfr13I	GGNCC	4 cut(s)	145, 347, 761, 847
ClaI	ATCGAT	1 cut(s)	787
Csp6I	GTAC	3 cut(s)	200, 589, 646
CspCI	CAANNNNNGTGG	2 cut(s)	325, 360
CviAII	CATG	9 cut(s)	107, 203, 227, 417, 441, 448, 606, 723, 779
CviQI	GTAC	3 cut(s)	200, 589, 646
DdeI	CTNAG	2 cut(s)	401, 482
DpnI	GATC	7 cut(s)	9, 30, 101, 548, 555, 567, 810
DpnII	GATC	7 cut(s)	7, 28, 99, 546, 553, 565, 808
Eam1104I	CTCTTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	204
EciI	GGCGGA	1 cut(s)	92
Eco130I	CCWWGG	3 cut(s)	106, 605, 757
Eco24I	GRGCYC	1 cut(s)	287
Eco31I	GGTCTC	1 cut(s)	215
Eco32I	GATATC	1 cut(s)	795
Eco47I	GGWCC	4 cut(s)	145, 347, 761, 847
Eco57I	CTGAAG	1 cut(s)	632
Eco88I	CYCGRG	1 cut(s)	126
Eco91I	GGTNACC	1 cut(s)	76
EcoO65I	GGTNACC	1 cut(s)	76
EcoRII	CCWGG	1 cut(s)	24
EcoRV	GATATC	1 cut(s)	795
EcoT14I	CCWWGG	3 cut(s)	106, 605, 757
EcoT22I	ATGCAT	1 cut(s)	367
EcoT38I	GRGCYC	1 cut(s)	287
ErhI	CCWWGG	3 cut(s)	106, 605, 757
FaeI	CATG	9 cut(s)	110, 206, 230, 420, 444, 451, 609, 726, 782
FalI	AAGNNNNNCTT	4 cut(s)	201, 233, 308, 340
FatI	CATG	9 cut(s)	106, 202, 226, 416, 440, 447, 605, 722, 778
FauNDI	CATATG	1 cut(s)	537
FbaI	TGATCA	1 cut(s)	546
FblI	GTMKAC	1 cut(s)	697
Fnu4HI	GCNGC	4 cut(s)	158, 192, 530, 768
FokI	GGATG	4 cut(s)	279, 374, 401, 647
FriOI	GRGCYC	1 cut(s)	287
Fsp4HI	GCNGC	4 cut(s)	158, 192, 530, 768
FspBI	CTAG	1 cut(s)	557
GluI	GCNGC	4 cut(s)	158, 192, 530, 768
HaeIII	GGCC	1 cut(s)	476
HapII	CCGG	2 cut(s)	667, 746
Hin1II	CATG	9 cut(s)	110, 206, 230, 420, 444, 451, 609, 726, 782
HindIII	AAGCTT	1 cut(s)	674
HinfI	GANTC	2 cut(s)	392, 742
HpaII	CCGG	2 cut(s)	667, 746
Hpy166II	GTNNAC	3 cut(s)	331, 698, 816
Hpy188I	TCNGA	3 cut(s)	239, 485, 799
Hpy188III	TCNNGA	6 cut(s)	218, 268, 296, 641, 746, 806
Hpy8I	GTNNAC	3 cut(s)	331, 698, 816
HpyAV	CCTTC	3 cut(s)	419, 738, 847
HpyCH4III	ACNGT	4 cut(s)	235, 344, 472, 803
HpyF10VI	GCNNNNNNNGC	3 cut(s)	102, 212, 682
HpyF3I	CTNAG	2 cut(s)	401, 482
Hsp92II	CATG	9 cut(s)	110, 206, 230, 420, 444, 451, 609, 726, 782
Kpn2I	TCCGGA	1 cut(s)	745
Ksp22I	TGATCA	1 cut(s)	546
Kzo9I	GATC	7 cut(s)	7, 28, 99, 546, 553, 565, 808
LmnI	GCTCC	3 cut(s)	282, 780, 823
Lsp1109I	GCAGC	3 cut(s)	169, 178, 516
LweI	GCATC	3 cut(s)	352, 484, 856
MaeI	CTAG	1 cut(s)	557
MaeIII	GTNAC	1 cut(s)	76
MalI	GATC	7 cut(s)	9, 30, 101, 548, 555, 567, 810
MboI	GATC	7 cut(s)	7, 28, 99, 546, 553, 565, 808
MboII	GAAGA	3 cut(s)	221, 625, 682
MflI	RGATCY	2 cut(s)	99, 553
MhlI	GDGCHC	1 cut(s)	287
MluCI	AATT	1 cut(s)	574
Mph1103I	ATGCAT	1 cut(s)	367
MroI	TCCGGA	1 cut(s)	745
MseI	TTAA	1 cut(s)	839
MspA1I	CMGCKG	2 cut(s)	529, 767
MspI	CCGG	2 cut(s)	667, 746
MspR9I	CCNGG	1 cut(s)	26
MvaI	CCWGG	1 cut(s)	26
MwoI	GCNNNNNNNGC	3 cut(s)	102, 212, 682
NcoI	CCATGG	2 cut(s)	106, 605
NdeI	CATATG	1 cut(s)	537
NdeII	GATC	7 cut(s)	7, 28, 99, 546, 553, 565, 808
NlaIII	CATG	9 cut(s)	110, 206, 230, 420, 444, 451, 609, 726, 782
NlaIV	GGNNCC	4 cut(s)	101, 147, 284, 463
NsiI	ATGCAT	1 cut(s)	367
NspI	RCATGY	1 cut(s)	206
PaeR7I	CTCGAG	1 cut(s)	126
PfeI	GAWTC	2 cut(s)	392, 742
PflMI	CCANNNNNTGG	1 cut(s)	635
PkrI	GCNGC	4 cut(s)	159, 193, 531, 769
PsiI	TTATAA	1 cut(s)	877
Psp6I	CCWGG	1 cut(s)	24
PspEI	GGTNACC	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	24
PspN4I	GGNNCC	4 cut(s)	101, 147, 284, 463
PspPI	GGNCC	4 cut(s)	145, 347, 761, 847
PspXI	VCTCGAGB	1 cut(s)	126
PstI	CTGCAG	3 cut(s)	20, 588, 664
PsuI	RGATCY	2 cut(s)	99, 553
RsaI	GTAC	3 cut(s)	201, 590, 647
RsaNI	GTAC	3 cut(s)	200, 589, 646
SaqAI	TTAA	1 cut(s)	839
SatI	GCNGC	4 cut(s)	158, 192, 530, 768
Sau3AI	GATC	7 cut(s)	7, 28, 99, 546, 553, 565, 808
Sau96I	GGNCC	4 cut(s)	145, 347, 761, 847
ScrFI	CCNGG	1 cut(s)	26
SduI	GDGCHC	1 cut(s)	287
SfaNI	GCATC	3 cut(s)	352, 484, 856
SfcI	CTRYAG	5 cut(s)	16, 132, 406, 584, 660
Sfr274I	CTCGAG	1 cut(s)	126
SinI	GGWCC	4 cut(s)	145, 347, 761, 847
SlaI	CTCGAG	1 cut(s)	126
SmlI	CTYRAG	3 cut(s)	126, 218, 314
SmoI	CTYRAG	3 cut(s)	126, 218, 314
Sse9I	AATT	1 cut(s)	574
SsiI	CCGC	4 cut(s)	103, 143, 527, 767
SspI	AATATT	2 cut(s)	174, 454
SspMI	CTAG	1 cut(s)	557
StyD4I	CCNGG	1 cut(s)	24
StyI	CCWWGG	3 cut(s)	106, 605, 757
TaaI	ACNGT	4 cut(s)	235, 344, 472, 803
TaqI	TCGA	3 cut(s)	6, 127, 787
TasI	AATT	1 cut(s)	574
TatI	WGTACW	3 cut(s)	199, 588, 645
TauI	GCSGC	1 cut(s)	770
TfiI	GAWTC	2 cut(s)	392, 742
Tru1I	TTAA	1 cut(s)	839
Tru9I	TTAA	1 cut(s)	839
TseI	GCWGC	3 cut(s)	157, 191, 529
TspDTI	ATGAA	3 cut(s)	243, 464, 705
Van91I	CCANNNNNTGG	1 cut(s)	635
VpaK11BI	GGWCC	4 cut(s)	145, 347, 761, 847
XceI	RCATGY	1 cut(s)	206
XhoI	CTCGAG	1 cut(s)	126
XmiI	GTMKAC	1 cut(s)	697
XspI	CTAG	1 cut(s)	557
Zsp2I	ATGCAT	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.