Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0013888

Physical Location & Seq

Genomic Coordinates Forward (+)

28329448 .. 28330743

Gene Structure 1296 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG250200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGAGCCCCGACCATCCCGACAACAAGCCTTACCTCAAGTCTTTGTGAACCTCAACAACTGTGGTCCAATGGTTTTGGATGCATTACAGAGGATAAAAGCAGAGGATGATTCAAGCCTGAGCTATAGGAGGTCATGCAGAGAAGGAATATGTGGGTCATGTGCCATGAATATTGATGGAACCAACACCTGGGCCTGTCTCAGACCCATTGATGCAGACACTTCAACAGCCACAACTATAACTCCGCTGCCTCATCATATGTTTGTGATCAAAGATCTAGTTGTTGATCTCACTAATTTCTACCTGCAGTACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000104 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006119 GO:0006121 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009055 GO:0009060 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016020 GO:0016310 GO:0016491 GO:0016627 GO:0017144 GO:0019637 GO:0019693 GO:0022900 GO:0022904 GO:0032991 GO:0034641 GO:0042773 GO:0042775 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0045273 GO:0045281 GO:0045333 GO:0046034 GO:0046483 GO:0055086 GO:0055114 GO:0070469 GO:0071704 GO:0072521 GO:0098796 GO:0098803 GO:1901135 GO:1901360 GO:1901564 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00020 ko00190 ko01100 ko01110 ko01120 ko01130 ko01200 ko04714 ko04932 ko05010 ko05012 ko05016 map00020 map00190 map01100 map01110 map01120 map01130 map01200 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Fer2_3 Fer4_17 Fer4_8

Protein Analysis

105

Amino Acids

11.79

Weight (kDa)

6.03

Isoelectric Point (pI)

51.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fer2_3	PF13085	11 - 100	1.5e-27	2Fe-2S iron-sulfur cluster binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0013888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65165 AT5G65165
fragaria_vesca	FvH4_1g21120
prunus_persica	Prupe.6G182900_v2.0.a1 Prupe.6G183100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0114901
rosa_laevigata	RLG00000018133
rosa_multiflora	Rmu_sc0002764.1_g000022
rosa_roxburghii	Rroxscaffold_2G00130430
rosa_rugosa	Rorug02G0191500 Rorug02G0191600 Rorug02G0191600
rosa_samantha	Rh2AG250200 Rh2BG259800 Rh2CG254600 Rh2DG258300
rosa_wichuraiana	Rw2G019510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	312
AccB7I	CCANNNNNTGG	1 cut(s)	189
AciI	CCGC	1 cut(s)	245
AfaI	GTAC	1 cut(s)	311
AfiI	CCNNNNNNNGG	1 cut(s)	189
AgsI	TTSAA	2 cut(s)	114, 225
AjnI	CCWGG	1 cut(s)	188
AluBI	AGCT	1 cut(s)	123
AluI	AGCT	1 cut(s)	123
Alw26I	GTCTC	1 cut(s)	203
AoxI	GGCC	1 cut(s)	192
ApeKI	GCWGC	1 cut(s)	247
AspS9I	GGNCC	2 cut(s)	65, 192
AvaII	GGWCC	1 cut(s)	65
BanII	GRGCYC	1 cut(s)	9
BbvI	GCAGC	1 cut(s)	234
BccI	CCATC	2 cut(s)	22, 170
BciT130I	CCWGG	1 cut(s)	190
BclI	TGATCA	1 cut(s)	267
BcoDI	GTCTC	1 cut(s)	203
BfaI	CTAG	1 cut(s)	278
BfmI	CTRYAG	2 cut(s)	124, 305
BfuAI	ACCTGC	1 cut(s)	312
BglII	AGATCT	1 cut(s)	274
BisI	GCNGC	1 cut(s)	248
BlsI	GCNGC	1 cut(s)	249
Bme1390I	CCNGG	1 cut(s)	190
Bme18I	GGWCC	1 cut(s)	65
BmgT120I	GGNCC	2 cut(s)	65, 192
BmiI	GGNNCC	2 cut(s)	6, 181
BmrFI	CCNGG	1 cut(s)	190
BmsI	GCATC	2 cut(s)	70, 202
Bpu10I	CCTNAGC	1 cut(s)	119
BpuEI	CTTGAG	1 cut(s)	21
BsaJI	CCNNGG	1 cut(s)	189
BsaXI	ACNNNNNCTCC	2 cut(s)	226, 256
Bsc4I	CCNNNNNNNGG	1 cut(s)	189
BseBI	CCWGG	1 cut(s)	190
BseDI	CCNNGG	1 cut(s)	189
BseGI	GGATG	3 cut(s)	14, 85, 112
BseLI	CCNNNNNNNGG	1 cut(s)	189
BseMII	CTCAG	2 cut(s)	110, 214
BseXI	GCAGC	1 cut(s)	234
BshFI	GGCC	1 cut(s)	194
BslI	CCNNNNNNNGG	1 cut(s)	189
BsmAI	GTCTC	1 cut(s)	203
BsnI	GGCC	1 cut(s)	194
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp143I	GATC	3 cut(s)	267, 274, 286
BspACI	CCGC	1 cut(s)	245
BspANI	GGCC	1 cut(s)	194
BspCNI	CTCAG	2 cut(s)	111, 213
BspLI	GGNNCC	2 cut(s)	6, 181
BspMAI	CTGCAG	1 cut(s)	309
BspMI	ACCTGC	1 cut(s)	312
BssECI	CCNNGG	1 cut(s)	189
BssMI	GATC	3 cut(s)	267, 274, 286
Bst2UI	CCWGG	1 cut(s)	190
Bst4CI	ACNGT	1 cut(s)	62
BstDEI	CTNAG	2 cut(s)	119, 200
BstF5I	GGATG	3 cut(s)	14, 85, 112
BstKTI	GATC	3 cut(s)	270, 277, 289
BstMAI	GTCTC	1 cut(s)	203
BstMBI	GATC	3 cut(s)	267, 274, 286
BstNI	CCWGG	1 cut(s)	190
BstSCI	CCNGG	1 cut(s)	188
BstSFI	CTRYAG	2 cut(s)	124, 305
BstV1I	GCAGC	1 cut(s)	234
BstX2I	RGATCY	1 cut(s)	274
BstYI	RGATCY	1 cut(s)	274
BsuRI	GGCC	1 cut(s)	194
BtsCI	GGATG	3 cut(s)	14, 85, 112
BveI	ACCTGC	1 cut(s)	312
Cfr13I	GGNCC	2 cut(s)	65, 192
Csp6I	GTAC	1 cut(s)	310
CspCI	CAANNNNNGTGG	2 cut(s)	43, 78
CviAII	CATG	3 cut(s)	135, 159, 166
CviJI	RGCY	6 cut(s)	7, 29, 117, 123, 194, 230
CviKI_1	RGCY	6 cut(s)	7, 29, 117, 123, 194, 230
CviQI	GTAC	1 cut(s)	310
DdeI	CTNAG	2 cut(s)	119, 200
DpnI	GATC	3 cut(s)	269, 276, 288
DpnII	GATC	3 cut(s)	267, 274, 286
Eco24I	GRGCYC	1 cut(s)	9
Eco47I	GGWCC	1 cut(s)	65
EcoRII	CCWGG	1 cut(s)	188
EcoT22I	ATGCAT	1 cut(s)	85
EcoT38I	GRGCYC	1 cut(s)	9
FaeI	CATG	3 cut(s)	138, 162, 169
FaiI	YATR	8 cut(s)	126, 136, 151, 160, 167, 239, 258, 260
FatI	CATG	3 cut(s)	134, 158, 165
FauNDI	CATATG	1 cut(s)	258
FbaI	TGATCA	1 cut(s)	267
Fnu4HI	GCNGC	1 cut(s)	248
FokI	GGATG	2 cut(s)	92, 119
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	1 cut(s)	248
FspBI	CTAG	1 cut(s)	278
GluI	GCNGC	1 cut(s)	248
HaeIII	GGCC	1 cut(s)	194
Hin1II	CATG	3 cut(s)	138, 162, 169
HinfI	GANTC	1 cut(s)	110
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	1 cut(s)	203
Hpy188III	TCNNGA	1 cut(s)	18
Hpy8I	GTNNAC	1 cut(s)	49
HpyAV	CCTTC	1 cut(s)	137
HpyCH4III	ACNGT	1 cut(s)	62
HpyCH4V	TGCA	4 cut(s)	83, 138, 215, 307
HpyF3I	CTNAG	2 cut(s)	119, 200
Hsp92II	CATG	3 cut(s)	138, 162, 169
Ksp22I	TGATCA	1 cut(s)	267
Kzo9I	GATC	3 cut(s)	267, 274, 286
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	4 cut(s)	131, 175, 202, 208
Lsp1109I	GCAGC	1 cut(s)	234
LweI	GCATC	2 cut(s)	70, 202
MaeI	CTAG	1 cut(s)	278
MalI	GATC	3 cut(s)	269, 276, 288
MboI	GATC	3 cut(s)	267, 274, 286
MflI	RGATCY	1 cut(s)	274
MhlI	GDGCHC	1 cut(s)	9
MluCI	AATT	1 cut(s)	295
MnlI	CCTC	6 cut(s)	45, 62, 84, 97, 123, 261
Mph1103I	ATGCAT	1 cut(s)	85
MspA1I	CMGCKG	1 cut(s)	247
MspR9I	CCNGG	1 cut(s)	190
MvaI	CCWGG	1 cut(s)	190
NdeI	CATATG	1 cut(s)	258
NdeII	GATC	3 cut(s)	267, 274, 286
NlaIII	CATG	3 cut(s)	138, 162, 169
NlaIV	GGNNCC	2 cut(s)	6, 181
NsiI	ATGCAT	1 cut(s)	85
PfeI	GAWTC	1 cut(s)	110
PflMI	CCANNNNNTGG	1 cut(s)	189
PkrI	GCNGC	1 cut(s)	249
Psp6I	CCWGG	1 cut(s)	188
PspGI	CCWGG	1 cut(s)	188
PspN4I	GGNNCC	2 cut(s)	6, 181
PspPI	GGNCC	2 cut(s)	65, 192
PstI	CTGCAG	1 cut(s)	309
PsuI	RGATCY	1 cut(s)	274
RsaI	GTAC	1 cut(s)	311
RsaNI	GTAC	1 cut(s)	310
SatI	GCNGC	1 cut(s)	248
Sau3AI	GATC	3 cut(s)	267, 274, 286
Sau96I	GGNCC	2 cut(s)	65, 192
ScrFI	CCNGG	1 cut(s)	190
SduI	GDGCHC	1 cut(s)	9
SetI	ASST	6 cut(s)	37, 54, 125, 134, 191, 306
SfaNI	GCATC	2 cut(s)	70, 202
SfcI	CTRYAG	2 cut(s)	124, 305
SinI	GGWCC	1 cut(s)	65
SmlI	CTYRAG	1 cut(s)	36
SmoI	CTYRAG	1 cut(s)	36
Sse9I	AATT	1 cut(s)	295
SsiI	CCGC	1 cut(s)	245
SspI	AATATT	1 cut(s)	172
SspMI	CTAG	1 cut(s)	278
StyD4I	CCNGG	1 cut(s)	188
TaaI	ACNGT	1 cut(s)	62
TasI	AATT	1 cut(s)	295
TatI	WGTACW	1 cut(s)	309
TfiI	GAWTC	1 cut(s)	110
TseI	GCWGC	1 cut(s)	247
TspDTI	ATGAA	1 cut(s)	182
Van91I	CCANNNNNTGG	1 cut(s)	189
VpaK11BI	GGWCC	1 cut(s)	65
XspI	CTAG	1 cut(s)	278
Zsp2I	ATGCAT	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.