Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0013888

Physical Location & Seq

Genomic Coordinates Reverse (-)

19017832 .. 19019874

Gene Structure 2043 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G182900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGTCAAAGAGCTGGATCCGCCATGGCTTCAACAGGGTAGCTCGAATTGTAGGCAGAGCTGCTGACCCAAAGAAGGAAAACTTTCCTGTGTTAGAAGGTCACCCTGTTGCCCAGCAGCATGCAGAAGTAGCTCTTGAAACCCATGACACAGTAAAAAAGAAAGAACAATTGCTGAAGGAGTTCAAGATCTATAGATGGAGCCCTGACCATCCCAACAACAAGCCCTACCTTCACTCTTACTTTGTGGACCTCTCCAACTGCGGTCCTATGGTTTTGGATGCATTGCAGAAGATAAAAGCAGAGGATGATTCAAGCCTGAGTTATTGGAGGTCGTGCAGGGAAGGGATATGTGGGTCATGCTCCATGAACATTGATGGGACAAATACTGTGGCCTGCCTCAGGCCCATAGATGCAGACACTTCCAAACCCACTACTATAACTCCTCTGCCTCACATGTTTGTGATCAAAGATCTGGTTGTTGACCTCACCAATTTCTACCAGCAGTACAAGTTGATTGAGCCATGGCTGAAGACGACGAAGCCACCAAAGGATGGCCGAGAGTACAGGCAATCACCCTCAGACAGGAAAAAGCTTGATGGGCTTTATGAGTGTATACTTTGTGCTTGTTGTACTACCTCATGCCCTTCCTACTGGTGGAATCCAGAGGAGTTCCTTGGACCAGCGGCTTTGCTCCATGCCTATCGATGGATTGCGGATAGTCGGGATGAGTTCACAGAGCCACGATTGCAGGCATTGACAGATGACCACACGAGGTTATATAGATGCAGGACTATAAAGAATTGCACAGCCACTTGCCCCAAAAGCCTCAATCCTGCGGATGCCATTAACAAAATGAAGACCAGGCACCTCTTGTCTCAACCAATGGAAAGGGTTGAGGACCAAGGATATATGTTGTGTCAGGCAAACCAATTGGTTGAGAGCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000104 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006119 GO:0006121 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009055 GO:0009060 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016020 GO:0016310 GO:0016491 GO:0016627 GO:0017144 GO:0019637 GO:0019693 GO:0022900 GO:0022904 GO:0032991 GO:0034641 GO:0042773 GO:0042775 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0045273 GO:0045281 GO:0045333 GO:0046034 GO:0046483 GO:0055086 GO:0055114 GO:0070469 GO:0071704 GO:0072521 GO:0098796 GO:0098803 GO:1901135 GO:1901360 GO:1901564 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00020 ko00190 ko01100 ko01110 ko01120 ko01130 ko01200 ko04714 ko04932 ko05010 ko05012 ko05016 map00020 map00190 map01100 map01110 map01120 map01130 map01200 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Fer2_3 Fer4_17 Fer4_8

Protein Analysis

316

Amino Acids

36.22

Weight (kDa)

8.13

Isoelectric Point (pI)

45.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65165 AT5G65165
fragaria_vesca	FvH4_1g21120
prunus_persica	Prupe.6G182900_v2.0.a1 Prupe.6G183100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0114901
rosa_laevigata	RLG00000018133
rosa_multiflora	Rmu_sc0002764.1_g000022
rosa_roxburghii	Rroxscaffold_2G00130430
rosa_rugosa	Rorug02G0191500 Rorug02G0191600 Rorug02G0191600
rosa_samantha	Rh2AG250200 Rh2BG259800 Rh2CG254600 Rh2DG258300
rosa_wichuraiana	Rw2G019510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	864
AccB7I	CCANNNNNTGG	1 cut(s)	551
AccI	GTMKAC	1 cut(s)	613
AciI	CCGC	5 cut(s)	19, 261, 683, 713, 836
AclWI	GGATC	2 cut(s)	10, 23
AcoI	YGGCCR	1 cut(s)	553
AcuI	CTGAAG	2 cut(s)	194, 548
AfaI	GTAC	3 cut(s)	506, 563, 631
AfiI	CCNNNNNNNGG	6 cut(s)	73, 399, 551, 582, 654, 705
AflIII	ACRYGT	1 cut(s)	453
AgsI	TTSAA	4 cut(s)	31, 137, 184, 312
AjnI	CCWGG	1 cut(s)	860
AluBI	AGCT	6 cut(s)	12, 41, 59, 131, 592, 942
AluI	AGCT	6 cut(s)	12, 41, 59, 131, 592, 942
Alw26I	GTCTC	1 cut(s)	879
AlwI	GGATC	2 cut(s)	10, 23
AoxI	GGCC	3 cut(s)	390, 401, 553
ApeKI	GCWGC	2 cut(s)	59, 115
Asp700I	GAANNNNTTC	2 cut(s)	81, 179
AspS9I	GGNCC	5 cut(s)	247, 263, 402, 677, 898
AsuHPI	GGTGA	3 cut(s)	92, 478, 564
AvaII	GGWCC	4 cut(s)	247, 263, 677, 898
AxyI	CCTNAGG	1 cut(s)	398
BamHI	GGATCC	1 cut(s)	15
BanI	GGYRCC	1 cut(s)	864
BanII	GRGCYC	1 cut(s)	203
BauI	CACGAG	1 cut(s)	769
BbsI	GAAGAC	2 cut(s)	536, 863
BbvI	GCAGC	2 cut(s)	46, 127
BccI	CCATC	6 cut(s)	189, 216, 368, 545, 590, 699
BciT130I	CCWGG	1 cut(s)	862
BclI	TGATCA	1 cut(s)	462
BcoDI	GTCTC	1 cut(s)	879
BfmI	CTRYAG	1 cut(s)	190
BglII	AGATCT	2 cut(s)	186, 469
BisI	GCNGC	3 cut(s)	60, 116, 684
BlsI	GCNGC	3 cut(s)	61, 117, 685
Bme1390I	CCNGG	1 cut(s)	862
Bme18I	GGWCC	4 cut(s)	247, 263, 677, 898
BmgT120I	GGNCC	5 cut(s)	247, 263, 402, 677, 898
BmiI	GGNNCC	3 cut(s)	17, 200, 866
BmrFI	CCNGG	1 cut(s)	862
BmsI	GCATC	4 cut(s)	268, 400, 773, 829
BpiI	GAAGAC	2 cut(s)	536, 863
Bsa29I	ATCGAT	1 cut(s)	703
BsaJI	CCNNGG	4 cut(s)	22, 521, 673, 901
BsaXI	ACNNNNNCTCC	2 cut(s)	424, 454
Bsc4I	CCNNNNNNNGG	6 cut(s)	73, 399, 551, 582, 654, 705
Bse1I	ACTGG	1 cut(s)	656
Bse21I	CCTNAGG	1 cut(s)	398
Bse3DI	GCAATG	1 cut(s)	281
BseBI	CCWGG	1 cut(s)	862
BseCI	ATCGAT	1 cut(s)	703
BseDI	CCNNGG	4 cut(s)	22, 521, 673, 901
BseGI	GGATG	6 cut(s)	208, 283, 310, 556, 730, 844
BseLI	CCNNNNNNNGG	6 cut(s)	73, 399, 551, 582, 654, 705
BseMI	GCAATG	1 cut(s)	281
BseMII	CTCAG	3 cut(s)	308, 412, 591
BseNI	ACTGG	1 cut(s)	656
BseRI	GAGGAG	2 cut(s)	432, 680
BseXI	GCAGC	2 cut(s)	46, 127
BseYI	CCCAGC	1 cut(s)	111
BsgI	GTGCAG	1 cut(s)	355
BshFI	GGCC	3 cut(s)	392, 403, 555
BshNI	GGYRCC	1 cut(s)	864
BshVI	ATCGAT	1 cut(s)	703
BslFI	GGGAC	1 cut(s)	391
BslI	CCNNNNNNNGG	6 cut(s)	73, 399, 551, 582, 654, 705
BsmAI	GTCTC	1 cut(s)	879
BsmFI	GGGAC	1 cut(s)	391
BsnI	GGCC	3 cut(s)	392, 403, 555
Bsp1286I	GDGCHC	1 cut(s)	203
Bsp143I	GATC	4 cut(s)	15, 186, 462, 469
Bsp19I	CCATGG	2 cut(s)	22, 521
BspACI	CCGC	5 cut(s)	19, 261, 683, 713, 836
BspANI	GGCC	3 cut(s)	392, 403, 555
BspCNI	CTCAG	3 cut(s)	309, 411, 590
BspDI	ATCGAT	1 cut(s)	703
BspLI	GGNNCC	3 cut(s)	17, 200, 866
BspPI	GGATC	2 cut(s)	10, 23
BspT107I	GGYRCC	1 cut(s)	864
BsrDI	GCAATG	1 cut(s)	281
BsrI	ACTGG	1 cut(s)	656
BssECI	CCNNGG	4 cut(s)	22, 521, 673, 901
BssMI	GATC	4 cut(s)	15, 186, 462, 469
BssNAI	GTATAC	1 cut(s)	614
BssSI	CACGAG	1 cut(s)	769
BssT1I	CCWWGG	4 cut(s)	22, 521, 673, 901
Bst1107I	GTATAC	1 cut(s)	614
Bst2BI	CACGAG	1 cut(s)	769
Bst2UI	CCWGG	1 cut(s)	862
Bst4CI	ACNGT	2 cut(s)	151, 388
BstC8I	GCNNGC	3 cut(s)	120, 394, 750
BstDEI	CTNAG	3 cut(s)	317, 398, 577
BstDSI	CCRYGG	2 cut(s)	22, 521
BstEII	GGTNACC	1 cut(s)	98
BstENI	CCTNNNNNAGG	2 cut(s)	397, 580
BstF5I	GGATG	6 cut(s)	208, 283, 310, 556, 730, 844
BstKTI	GATC	4 cut(s)	18, 189, 465, 472
BstMAI	GTCTC	1 cut(s)	879
BstMBI	GATC	4 cut(s)	15, 186, 462, 469
BstMWI	GCNNNNNNNGC	5 cut(s)	18, 128, 598, 745, 822
BstNI	CCWGG	1 cut(s)	862
BstNSI	RCATGY	2 cut(s)	122, 457
BstPI	GGTNACC	1 cut(s)	98
BstSCI	CCNGG	1 cut(s)	860
BstSFI	CTRYAG	1 cut(s)	190
BstV1I	GCAGC	2 cut(s)	46, 127
BstV2I	GAAGAC	2 cut(s)	536, 863
BstX2I	RGATCY	3 cut(s)	15, 186, 469
BstYI	RGATCY	3 cut(s)	15, 186, 469
BstZ17I	GTATAC	1 cut(s)	614
Bsu15I	ATCGAT	1 cut(s)	703
Bsu36I	CCTNAGG	1 cut(s)	398
BsuRI	GGCC	3 cut(s)	392, 403, 555
BsuTUI	ATCGAT	1 cut(s)	703
BtgI	CCRYGG	2 cut(s)	22, 521
BtsCI	GGATG	6 cut(s)	208, 283, 310, 556, 730, 844
Cac8I	GCNNGC	3 cut(s)	120, 394, 750
Cfr13I	GGNCC	5 cut(s)	247, 263, 402, 677, 898
ClaI	ATCGAT	1 cut(s)	703
Csp6I	GTAC	3 cut(s)	505, 562, 630
CspCI	CAANNNNNGTGG	2 cut(s)	369, 404
CviAII	CATG	9 cut(s)	23, 119, 143, 357, 364, 454, 522, 639, 695
CviQI	GTAC	3 cut(s)	505, 562, 630
DdeI	CTNAG	3 cut(s)	317, 398, 577
DpnI	GATC	4 cut(s)	17, 188, 464, 471
DpnII	GATC	4 cut(s)	15, 186, 462, 469
EaeI	YGGCCR	1 cut(s)	553
EciI	GGCGGA	1 cut(s)	8
Eco130I	CCWWGG	4 cut(s)	22, 521, 673, 901
Eco24I	GRGCYC	1 cut(s)	203
Eco47I	GGWCC	4 cut(s)	247, 263, 677, 898
Eco57I	CTGAAG	2 cut(s)	194, 548
Eco81I	CCTNAGG	1 cut(s)	398
Eco91I	GGTNACC	1 cut(s)	98
EcoNI	CCTNNNNNAGG	2 cut(s)	397, 580
EcoO65I	GGTNACC	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	860
EcoT14I	CCWWGG	4 cut(s)	22, 521, 673, 901
EcoT22I	ATGCAT	1 cut(s)	283
EcoT38I	GRGCYC	1 cut(s)	203
ErhI	CCWWGG	4 cut(s)	22, 521, 673, 901
FaeI	CATG	9 cut(s)	26, 122, 146, 360, 367, 457, 525, 642, 698
FalI	AAGNNNNNCTT	4 cut(s)	65, 97, 117, 149
FaqI	GGGAC	1 cut(s)	391
FatI	CATG	9 cut(s)	22, 118, 142, 356, 363, 453, 521, 638, 694
FbaI	TGATCA	1 cut(s)	462
FblI	GTMKAC	1 cut(s)	613
Fnu4HI	GCNGC	3 cut(s)	60, 116, 684
FokI	GGATG	6 cut(s)	195, 290, 317, 563, 737, 851
FriOI	GRGCYC	1 cut(s)	203
Fsp4HI	GCNGC	3 cut(s)	60, 116, 684
GluI	GCNGC	3 cut(s)	60, 116, 684
GsaI	CCCAGC	1 cut(s)	115
HaeIII	GGCC	3 cut(s)	392, 403, 555
Hin1II	CATG	9 cut(s)	26, 122, 146, 360, 367, 457, 525, 642, 698
HincII	GTYRAC	1 cut(s)	481
HindII	GTYRAC	1 cut(s)	481
HindIII	AAGCTT	1 cut(s)	590
HinfI	GANTC	2 cut(s)	308, 658
HphI	GGTGA	3 cut(s)	92, 478, 564
Hpy166II	GTNNAC	4 cut(s)	247, 481, 614, 732
Hpy188I	TCNGA	1 cut(s)	580
Hpy188III	TCNNGA	4 cut(s)	134, 184, 662, 722
Hpy8I	GTNNAC	4 cut(s)	247, 481, 614, 732
Hpy99I	CGWCG	1 cut(s)	538
HpyAV	CCTTC	6 cut(s)	67, 89, 169, 239, 335, 654
HpyCH4III	ACNGT	2 cut(s)	151, 388
HpyCH4V	TGCA	8 cut(s)	122, 281, 286, 336, 413, 748, 786, 804
HpyF10VI	GCNNNNNNNGC	5 cut(s)	18, 128, 598, 745, 822
HpyF3I	CTNAG	3 cut(s)	317, 398, 577
Hsp92II	CATG	9 cut(s)	26, 122, 146, 360, 367, 457, 525, 642, 698
Ksp22I	TGATCA	1 cut(s)	462
Kzo9I	GATC	4 cut(s)	15, 186, 462, 469
LmnI	GCTCC	3 cut(s)	198, 365, 696
Lsp1109I	GCAGC	2 cut(s)	46, 127
LweI	GCATC	4 cut(s)	268, 400, 773, 829
MaeIII	GTNAC	1 cut(s)	98
MalI	GATC	4 cut(s)	17, 188, 464, 471
MboI	GATC	4 cut(s)	15, 186, 462, 469
MboII	GAAGA	3 cut(s)	301, 541, 868
MfeI	CAATTG	2 cut(s)	167, 929
MflI	RGATCY	3 cut(s)	15, 186, 469
MhlI	GDGCHC	1 cut(s)	203
MluCI	AATT	5 cut(s)	45, 167, 490, 799, 929
MmeI	TCCRAC	1 cut(s)	279
Mph1103I	ATGCAT	1 cut(s)	283
MroXI	GAANNNNTTC	2 cut(s)	81, 179
MseI	TTAA	2 cut(s)	846, 946
MslI	CAYNNNNRTG	1 cut(s)	458
MspA1I	CMGCKG	1 cut(s)	683
MspR9I	CCNGG	1 cut(s)	862
MunI	CAATTG	2 cut(s)	167, 929
MvaI	CCWGG	1 cut(s)	862
MwoI	GCNNNNNNNGC	5 cut(s)	18, 128, 598, 745, 822
NcoI	CCATGG	2 cut(s)	22, 521
NdeII	GATC	4 cut(s)	15, 186, 462, 469
NlaIII	CATG	9 cut(s)	26, 122, 146, 360, 367, 457, 525, 642, 698
NlaIV	GGNNCC	3 cut(s)	17, 200, 866
NmeAIII	GCCGAG	1 cut(s)	581
NmuCI	GTSAC	1 cut(s)	98
NsiI	ATGCAT	1 cut(s)	283
NspI	RCATGY	2 cut(s)	122, 457
PaeI	GCATGC	1 cut(s)	122
PciI	ACATGT	1 cut(s)	453
PdmI	GAANNNNTTC	2 cut(s)	81, 179
PfeI	GAWTC	2 cut(s)	308, 658
PflMI	CCANNNNNTGG	1 cut(s)	551
PkrI	GCNGC	3 cut(s)	61, 117, 685
PscI	ACATGT	1 cut(s)	453
Psp6I	CCWGG	1 cut(s)	860
PspEI	GGTNACC	1 cut(s)	98
PspFI	CCCAGC	1 cut(s)	111
PspGI	CCWGG	1 cut(s)	860
PspN4I	GGNNCC	3 cut(s)	17, 200, 866
PspPI	GGNCC	5 cut(s)	247, 263, 402, 677, 898
PsuI	RGATCY	3 cut(s)	15, 186, 469
RsaI	GTAC	3 cut(s)	506, 563, 631
RsaNI	GTAC	3 cut(s)	505, 562, 630
RseI	CAYNNNNRTG	1 cut(s)	458
SaqAI	TTAA	2 cut(s)	846, 946
SatI	GCNGC	3 cut(s)	60, 116, 684
Sau3AI	GATC	4 cut(s)	15, 186, 462, 469
Sau96I	GGNCC	5 cut(s)	247, 263, 402, 677, 898
ScrFI	CCNGG	1 cut(s)	862
SduI	GDGCHC	1 cut(s)	203
SfaNI	GCATC	4 cut(s)	268, 400, 773, 829
SfcI	CTRYAG	1 cut(s)	190
SinI	GGWCC	4 cut(s)	247, 263, 677, 898
SmiMI	CAYNNNNRTG	1 cut(s)	458
SphI	GCATGC	1 cut(s)	122
Sse9I	AATT	5 cut(s)	45, 167, 490, 799, 929
SsiI	CCGC	5 cut(s)	19, 261, 683, 713, 836
StyD4I	CCNGG	1 cut(s)	860
StyI	CCWWGG	4 cut(s)	22, 521, 673, 901
TaaI	ACNGT	2 cut(s)	151, 388
TaqI	TCGA	2 cut(s)	43, 703
TasI	AATT	5 cut(s)	45, 167, 490, 799, 929
TatI	WGTACW	3 cut(s)	504, 561, 629
TauI	GCSGC	1 cut(s)	686
TfiI	GAWTC	2 cut(s)	308, 658
Tru1I	TTAA	2 cut(s)	846, 946
Tru9I	TTAA	2 cut(s)	846, 946
TseFI	GTSAC	1 cut(s)	98
TseI	GCWGC	2 cut(s)	59, 115
Tsp45I	GTSAC	1 cut(s)	98
TspDTI	ATGAA	2 cut(s)	380, 869
Van91I	CCANNNNNTGG	1 cut(s)	551
VpaK11BI	GGWCC	4 cut(s)	247, 263, 677, 898
XagI	CCTNNNNNAGG	2 cut(s)	397, 580
XceI	RCATGY	2 cut(s)	122, 457
XmiI	GTMKAC	1 cut(s)	613
XmnI	GAANNNNTTC	2 cut(s)	81, 179
Zsp2I	ATGCAT	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.