Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0013888

Physical Location & Seq

Genomic Coordinates Forward (+)

25695998 .. 25698016

Gene Structure 2019 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018133

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGTCAAAGAGCTGGATCCGCCATGGCTACAACAACGTAGCTCGAGCTGTAGGCGAAGCCGACCCAAAGAAGCAGCAAGACTTTCCAATATTGAAAGGACACCCTGCTGCACAAGAACACGCAGAAGAAGCTCTTGAGACCCATGAAACTGTCAGAAGCAGAAACAAAGTTCTAAAGGAGTTCAAGATTTACAGATGGAGCCCCGACCATCCCGACAACAAGCCTTACCTGAAGTCTTACTTTGTGAACCTCAACAACTGTGGTCCCATGGTTTTGGATGCATTACAGAAGATAAAAGCAGAGGATGATTCAACCCTGAGCTATAGGAGGTCATGCAGAGAAGGAATATGTGGGTCATGTGCCATGAATATTGATGGAACCAACACCGTGGCCTGTCTCAGACCCATTGATGCAGACACTTCAACAGCCACAACTATAACTCCGCTGCCTCATATGTTTGTGATCAAAGATTTAGTTGTTGATCTCACTAATTTCTACCAGCAGTACAAGTTGATTGAACCATGGCTGAAGACTAAAAAGCCCCTGGAGGACGGTCGGGAGTACAAGCAATCGCCTGCAGACCGGAAGAAGCTTGACGGGCTTTATGAATGTATACTTTGTGCTTGTTGTTCTACCTCATGCCCTTCCTACTGGTGGAATCCGGAGGAGTTTCTTGGACCAGCGGCTCTGCTCCATGCTTATCGATGGATATCTGACAGTCGGGATCAGTCCACAGAGGAGCGATTGCAGGCATTAACAGAGGACCGGAAGAGGCTATATAGATGCAACATTATAAAGAATTGCACTGTCAGGTGCCCCAAAAGCCTCAATCCTGCCGATGGCATACAGAAAATGAAAACCAAGCATTTGTTCTCTCAGCCTGTTGAAGTGGTCGGGAGCATGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000104 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006119 GO:0006121 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009055 GO:0009060 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016020 GO:0016310 GO:0016491 GO:0016627 GO:0017144 GO:0019637 GO:0019693 GO:0022900 GO:0022904 GO:0032991 GO:0034641 GO:0042773 GO:0042775 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0045273 GO:0045281 GO:0045333 GO:0046034 GO:0046483 GO:0055086 GO:0055114 GO:0070469 GO:0071704 GO:0072521 GO:0098796 GO:0098803 GO:1901135 GO:1901360 GO:1901564 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00020 ko00190 ko01100 ko01110 ko01120 ko01130 ko01200 ko04714 ko04932 ko05010 ko05012 ko05016 map00020 map00190 map01100 map01110 map01120 map01130 map01200 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Fer2_3 Fer4_17 Fer4_8

Protein Analysis

303

Amino Acids

34.58

Weight (kDa)

8.47

Isoelectric Point (pI)

56.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fer2_3	PF13085	61 - 166	3.5e-33	2Fe-2S iron-sulfur cluster binding domain
Fer4_8	PF13183	201 - 275	1.7e-09	4Fe-4S dicluster domain
Fer4_17	PF13534	203 - 277	1.8e-09	4Fe-4S dicluster domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65165 AT5G65165
fragaria_vesca	FvH4_1g21120
prunus_persica	Prupe.6G182900_v2.0.a1 Prupe.6G183100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0114901
rosa_laevigata	RLG00000018133
rosa_multiflora	Rmu_sc0002764.1_g000022
rosa_roxburghii	Rroxscaffold_2G00130430
rosa_rugosa	Rorug02G0191500 Rorug02G0191600 Rorug02G0191600
rosa_samantha	Rh2AG250200 Rh2BG259800 Rh2CG254600 Rh2DG258300
rosa_wichuraiana	Rw2G019510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	794
AccB1I	GGYRCC	1 cut(s)	813
AccI	GTMKAC	1 cut(s)	613
AccIII	TCCGGA	1 cut(s)	661
AciI	CCGC	3 cut(s)	19, 443, 683
AclWI	GGATC	3 cut(s)	10, 23, 732
AcuI	CTGAAG	2 cut(s)	251, 548
AfaI	GTAC	2 cut(s)	506, 563
AfiI	CCNNNNNNNGG	2 cut(s)	654, 839
AgsI	TTSAA	6 cut(s)	94, 184, 312, 423, 518, 887
AjnI	CCWGG	1 cut(s)	543
AjuI	GAANNNNNNNTTGG	2 cut(s)	854, 886
AluBI	AGCT	6 cut(s)	12, 41, 47, 131, 321, 592
AluI	AGCT	6 cut(s)	12, 41, 47, 131, 321, 592
Alw26I	GTCTC	2 cut(s)	131, 401
AlwI	GGATC	3 cut(s)	10, 23, 732
Ama87I	CYCGRG	1 cut(s)	42
Aor13HI	TCCGGA	1 cut(s)	661
AoxI	GGCC	1 cut(s)	390
ApeKI	GCWGC	3 cut(s)	73, 107, 445
AspS9I	GGNCC	3 cut(s)	263, 677, 763
AvaI	CYCGRG	1 cut(s)	42
AvaII	GGWCC	3 cut(s)	263, 677, 763
BaeGI	GKGCMC	1 cut(s)	818
BamHI	GGATCC	1 cut(s)	15
BanI	GGYRCC	1 cut(s)	813
BanII	GRGCYC	1 cut(s)	203
BbsI	GAAGAC	1 cut(s)	536
BbvI	GCAGC	3 cut(s)	85, 94, 432
BccI	CCATC	5 cut(s)	189, 216, 368, 699, 833
BciT130I	CCWGG	1 cut(s)	545
BclI	TGATCA	1 cut(s)	462
BcoDI	GTCTC	2 cut(s)	131, 401
BfmI	CTRYAG	3 cut(s)	48, 322, 576
BisI	GCNGC	4 cut(s)	74, 108, 446, 684
BlsI	GCNGC	4 cut(s)	75, 109, 447, 685
Bme1390I	CCNGG	1 cut(s)	545
Bme18I	GGWCC	3 cut(s)	263, 677, 763
BmeT110I	CYCGRG	1 cut(s)	42
BmgT120I	GGNCC	3 cut(s)	263, 677, 763
BmiI	GGNNCC	5 cut(s)	17, 200, 265, 379, 815
BmrFI	CCNGG	1 cut(s)	545
BmsI	GCATC	3 cut(s)	268, 400, 773
BpiI	GAAGAC	1 cut(s)	536
BpmI	CTGGAG	1 cut(s)	566
Bpu10I	CCTNAGC	1 cut(s)	317
BpuEI	CTTGAG	1 cut(s)	155
Bsa29I	ATCGAT	1 cut(s)	703
BsaBI	GATNNNNATC	1 cut(s)	709
BsaI	GGTCTC	1 cut(s)	131
BsaJI	CCNNGG	5 cut(s)	22, 267, 387, 521, 543
BsaWI	WCCGGW	3 cut(s)	582, 661, 765
BsaXI	ACNNNNNCTCC	2 cut(s)	424, 454
Bsc4I	CCNNNNNNNGG	2 cut(s)	654, 839
Bse1I	ACTGG	1 cut(s)	656
Bse8I	GATNNNNATC	1 cut(s)	709
BseAI	TCCGGA	1 cut(s)	661
BseBI	CCWGG	1 cut(s)	545
BseCI	ATCGAT	1 cut(s)	703
BseDI	CCNNGG	5 cut(s)	22, 267, 387, 521, 543
BseGI	GGATG	3 cut(s)	208, 283, 310
BseJI	GATNNNNATC	1 cut(s)	709
BseLI	CCNNNNNNNGG	2 cut(s)	654, 839
BseMII	CTCAG	3 cut(s)	308, 412, 890
BseNI	ACTGG	1 cut(s)	656
BseRI	GAGGAG	2 cut(s)	680, 752
BseSI	GKGCMC	1 cut(s)	818
BseXI	GCAGC	3 cut(s)	85, 94, 432
BsgI	GTGCAG	1 cut(s)	93
Bsh1285I	CGRYCG	1 cut(s)	556
BshFI	GGCC	1 cut(s)	392
BshNI	GGYRCC	1 cut(s)	813
BshVI	ATCGAT	1 cut(s)	703
BsiEI	CGRYCG	1 cut(s)	556
BsiHKCI	CYCGRG	1 cut(s)	42
BsiSI	CCGG	3 cut(s)	583, 662, 766
BslFI	GGGAC	1 cut(s)	249
BslI	CCNNNNNNNGG	2 cut(s)	654, 839
BsmAI	GTCTC	2 cut(s)	131, 401
BsmFI	GGGAC	1 cut(s)	249
BsnI	GGCC	1 cut(s)	392
Bso31I	GGTCTC	1 cut(s)	131
BsoBI	CYCGRG	1 cut(s)	42
Bsp1286I	GDGCHC	2 cut(s)	203, 818
Bsp13I	TCCGGA	1 cut(s)	661
Bsp143I	GATC	4 cut(s)	15, 462, 481, 724
Bsp19I	CCATGG	3 cut(s)	22, 267, 521
BspACI	CCGC	3 cut(s)	19, 443, 683
BspANI	GGCC	1 cut(s)	392
BspCNI	CTCAG	3 cut(s)	309, 411, 889
BspDI	ATCGAT	1 cut(s)	703
BspEI	TCCGGA	1 cut(s)	661
BspLI	GGNNCC	5 cut(s)	17, 200, 265, 379, 815
BspMAI	CTGCAG	1 cut(s)	580
BspPI	GGATC	3 cut(s)	10, 23, 732
BspT107I	GGYRCC	1 cut(s)	813
BspTNI	GGTCTC	1 cut(s)	131
BsrI	ACTGG	1 cut(s)	656
BssECI	CCNNGG	5 cut(s)	22, 267, 387, 521, 543
BssMI	GATC	4 cut(s)	15, 462, 481, 724
BssNAI	GTATAC	1 cut(s)	614
BssT1I	CCWWGG	3 cut(s)	22, 267, 521
Bst1107I	GTATAC	1 cut(s)	614
Bst2UI	CCWGG	1 cut(s)	545
Bst4CI	ACNGT	6 cut(s)	151, 260, 388, 554, 719, 808
Bst6I	CTCTTC	1 cut(s)	764
BstC8I	GCNNGC	2 cut(s)	576, 750
BstDEI	CTNAG	3 cut(s)	317, 398, 876
BstDSI	CCRYGG	4 cut(s)	22, 267, 387, 521
BstF5I	GGATG	3 cut(s)	208, 283, 310
BstKTI	GATC	4 cut(s)	18, 465, 484, 727
BstMAI	GTCTC	2 cut(s)	131, 401
BstMBI	GATC	4 cut(s)	15, 462, 481, 724
BstMCI	CGRYCG	1 cut(s)	556
BstMWI	GCNNNNNNNGC	4 cut(s)	18, 128, 598, 822
BstNI	CCWGG	1 cut(s)	545
BstSCI	CCNGG	1 cut(s)	543
BstSFI	CTRYAG	3 cut(s)	48, 322, 576
BstSLI	GKGCMC	1 cut(s)	818
BstV1I	GCAGC	3 cut(s)	85, 94, 432
BstV2I	GAAGAC	1 cut(s)	536
BstX2I	RGATCY	1 cut(s)	15
BstXI	CCANNNNNNTGG	2 cut(s)	274, 388
BstYI	RGATCY	1 cut(s)	15
BstZ17I	GTATAC	1 cut(s)	614
Bsu15I	ATCGAT	1 cut(s)	703
BsuRI	GGCC	1 cut(s)	392
BsuTUI	ATCGAT	1 cut(s)	703
BtgI	CCRYGG	4 cut(s)	22, 267, 387, 521
BtsCI	GGATG	3 cut(s)	208, 283, 310
BtsIMutI	CAGTG	1 cut(s)	804
Cac8I	GCNNGC	2 cut(s)	576, 750
Cfr13I	GGNCC	3 cut(s)	263, 677, 763
ClaI	ATCGAT	1 cut(s)	703
Csp6I	GTAC	2 cut(s)	505, 562
CspCI	CAANNNNNGTGG	2 cut(s)	241, 276
CviQI	GTAC	2 cut(s)	505, 562
DdeI	CTNAG	3 cut(s)	317, 398, 876
DpnI	GATC	4 cut(s)	17, 464, 483, 726
DpnII	GATC	4 cut(s)	15, 462, 481, 724
Eam1104I	CTCTTC	1 cut(s)	764
EarI	CTCTTC	1 cut(s)	764
EciI	GGCGGA	1 cut(s)	8
Eco130I	CCWWGG	3 cut(s)	22, 267, 521
Eco24I	GRGCYC	1 cut(s)	203
Eco31I	GGTCTC	1 cut(s)	131
Eco32I	GATATC	1 cut(s)	711
Eco47I	GGWCC	3 cut(s)	263, 677, 763
Eco57I	CTGAAG	2 cut(s)	251, 548
Eco88I	CYCGRG	1 cut(s)	42
EcoRII	CCWGG	1 cut(s)	543
EcoRV	GATATC	1 cut(s)	711
EcoT14I	CCWWGG	3 cut(s)	22, 267, 521
EcoT22I	ATGCAT	1 cut(s)	283
EcoT38I	GRGCYC	1 cut(s)	203
ErhI	CCWWGG	3 cut(s)	22, 267, 521
FalI	AAGNNNNNCTT	4 cut(s)	117, 149, 224, 256
FaqI	GGGAC	1 cut(s)	249
FauNDI	CATATG	1 cut(s)	453
FbaI	TGATCA	1 cut(s)	462
FblI	GTMKAC	1 cut(s)	613
Fnu4HI	GCNGC	4 cut(s)	74, 108, 446, 684
FokI	GGATG	3 cut(s)	195, 290, 317
FriOI	GRGCYC	1 cut(s)	203
Fsp4HI	GCNGC	4 cut(s)	74, 108, 446, 684
GluI	GCNGC	4 cut(s)	74, 108, 446, 684
GsuI	CTGGAG	1 cut(s)	566
HaeIII	GGCC	1 cut(s)	392
HapII	CCGG	3 cut(s)	583, 662, 766
HindIII	AAGCTT	1 cut(s)	590
HinfI	GANTC	2 cut(s)	308, 658
HpaII	CCGG	3 cut(s)	583, 662, 766
Hpy166II	GTNNAC	3 cut(s)	247, 614, 732
Hpy188I	TCNGA	3 cut(s)	155, 401, 715
Hpy188III	TCNNGA	7 cut(s)	134, 184, 212, 557, 662, 722, 895
Hpy8I	GTNNAC	3 cut(s)	247, 614, 732
HpyAV	CCTTC	2 cut(s)	335, 654
HpyCH4III	ACNGT	6 cut(s)	151, 260, 388, 554, 719, 808
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	8 cut(s)	110, 281, 336, 413, 578, 748, 786, 804
HpyF10VI	GCNNNNNNNGC	4 cut(s)	18, 128, 598, 822
HpyF3I	CTNAG	3 cut(s)	317, 398, 876
HpySE526I	ACGT	1 cut(s)	36
Kpn2I	TCCGGA	1 cut(s)	661
Ksp22I	TGATCA	1 cut(s)	462
Kzo9I	GATC	4 cut(s)	15, 462, 481, 724
LmnI	GCTCC	4 cut(s)	198, 696, 739, 897
Lsp1109I	GCAGC	3 cut(s)	85, 94, 432
LweI	GCATC	3 cut(s)	268, 400, 773
MaeII	ACGT	1 cut(s)	36
MalI	GATC	4 cut(s)	17, 464, 483, 726
MboI	GATC	4 cut(s)	15, 462, 481, 724
MboII	GAAGA	5 cut(s)	137, 301, 541, 598, 781
MflI	RGATCY	1 cut(s)	15
MhlI	GDGCHC	2 cut(s)	203, 818
MluCI	AATT	2 cut(s)	490, 799
Mph1103I	ATGCAT	1 cut(s)	283
MroI	TCCGGA	1 cut(s)	661
MseI	TTAA	1 cut(s)	755
MspA1I	CMGCKG	2 cut(s)	445, 683
MspI	CCGG	3 cut(s)	583, 662, 766
MspR9I	CCNGG	1 cut(s)	545
MvaI	CCWGG	1 cut(s)	545
MwoI	GCNNNNNNNGC	4 cut(s)	18, 128, 598, 822
NcoI	CCATGG	3 cut(s)	22, 267, 521
NdeI	CATATG	1 cut(s)	453
NdeII	GATC	4 cut(s)	15, 462, 481, 724
NlaIV	GGNNCC	5 cut(s)	17, 200, 265, 379, 815
NsiI	ATGCAT	1 cut(s)	283
PaeR7I	CTCGAG	1 cut(s)	42
PfeI	GAWTC	2 cut(s)	308, 658
PkrI	GCNGC	4 cut(s)	75, 109, 447, 685
PsiI	TTATAA	1 cut(s)	794
Psp6I	CCWGG	1 cut(s)	543
PspGI	CCWGG	1 cut(s)	543
PspN4I	GGNNCC	5 cut(s)	17, 200, 265, 379, 815
PspPI	GGNCC	3 cut(s)	263, 677, 763
PspXI	VCTCGAGB	1 cut(s)	42
PstI	CTGCAG	1 cut(s)	580
PsuI	RGATCY	1 cut(s)	15
RsaI	GTAC	2 cut(s)	506, 563
RsaNI	GTAC	2 cut(s)	505, 562
SaqAI	TTAA	1 cut(s)	755
SatI	GCNGC	4 cut(s)	74, 108, 446, 684
Sau3AI	GATC	4 cut(s)	15, 462, 481, 724
Sau96I	GGNCC	3 cut(s)	263, 677, 763
ScrFI	CCNGG	1 cut(s)	545
SduI	GDGCHC	2 cut(s)	203, 818
SfaNI	GCATC	3 cut(s)	268, 400, 773
SfcI	CTRYAG	3 cut(s)	48, 322, 576
Sfr274I	CTCGAG	1 cut(s)	42
SinI	GGWCC	3 cut(s)	263, 677, 763
SlaI	CTCGAG	1 cut(s)	42
SmlI	CTYRAG	2 cut(s)	42, 134
SmoI	CTYRAG	2 cut(s)	42, 134
Sse9I	AATT	2 cut(s)	490, 799
SsiI	CCGC	3 cut(s)	19, 443, 683
SspI	AATATT	2 cut(s)	90, 370
StyD4I	CCNGG	1 cut(s)	543
StyI	CCWWGG	3 cut(s)	22, 267, 521
TaaI	ACNGT	6 cut(s)	151, 260, 388, 554, 719, 808
TaiI	ACGT	1 cut(s)	39
TaqI	TCGA	2 cut(s)	43, 703
TasI	AATT	2 cut(s)	490, 799
TatI	WGTACW	2 cut(s)	504, 561
TauI	GCSGC	1 cut(s)	686
TfiI	GAWTC	2 cut(s)	308, 658
Tru1I	TTAA	1 cut(s)	755
Tru9I	TTAA	1 cut(s)	755
TscAI	CASTG	1 cut(s)	811
TseI	GCWGC	3 cut(s)	73, 107, 445
TspDTI	ATGAA	4 cut(s)	159, 380, 621, 869
TspRI	CASTG	1 cut(s)	811
VpaK11BI	GGWCC	3 cut(s)	263, 677, 763
XhoI	CTCGAG	1 cut(s)	42
XmiI	GTMKAC	1 cut(s)	613
Zsp2I	ATGCAT	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.