Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0003124

Physical Location & Seq

Genomic Coordinates Reverse (-)

14367189 .. 14370147

Gene Structure 2959 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g22460.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGAGTAAGGGGGAGCTTGACTTGGGAAGCCTCGGCTTGGCAACTAAGTTTACCGAATCATTTGGACGCCATGCTGTGAAAAAGCAACTTGAACAGCTTGGTTATGAGCTCGATGATGTTCAACTTGAGACTGTATTCTGGCGTTTAAAGGGAGTAGCTGAACAGAAAAAGAGAGTCACTGATGCAGACCTCCGAGCATTGGTGTCAGATGAAGTTTTTCAGCCAGAAGTTGTCTGGAAGCTTCATGATCTGCAGGTTACTTGTGGAACTCTTGGTCTTTCCACAGCAACCGTTAAATTAATTGATTCCGATGGGAGAGAGCAAATTGCATGTTCAGTTGGGATGGGACCAGTGGATTCAGCTTACAAGGCTGTTGATCTCATTGTGAAGGAACCAGTAACACTTGTTGAGTACTCTATGAATGCGGTCACAGAAGGAATAGATGCAATAGCCACTACTCATGTTGTAATTCGAATTGAAAACAGTGACATGGTCGCTGGTGGGATATCTCAACGGACATTCAGTGGGATTGGGGCAGGAATGGACATTGTTGTTTCTAGTGTCAAGGCCTACATTGGTGCCTTGAATAAGATGCTAGGTTTCAAGGAAAGGTTTCCACAAGAGATTCCACCAGAATCAGCAGAACGAACCCCAGTGTCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003852 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006551 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009098 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0016053 GO:0016740 GO:0016746 GO:0019752 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046912 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00290 ko00620 ko01100 ko01110 ko01210 ko01230 map00290 map00620 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

HMGL-like LeuA_dimer

Protein Analysis

222

Amino Acids

23.93

Weight (kDa)

4.99

Isoelectric Point (pI)

33.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LeuA_dimer	PF08502	58 - 199	1.9e-32	LeuA allosteric (dimerisation) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18500 AT1G74040 AT1G74040 AT1G74040
fragaria_vesca	FvH4_1g22410 FvH4_1g22460 FvH4_1g22570 FvH4_1g22570 FvH4_1g22570 FvH4_1g22570
malus_domestica	MD01G1019700.v1.1 MD15G1332600.v1.1
prunus_persica	Prupe.6G172500_v2.0.a1 Prupe.6G172500_v2.0.a1 Prupe.6G172500_v2.0.a1
pyrus_communis	pycom01g04920 pycom15g29280
rosa_chinensis	RchiOBHm_Chr2g0116551 RchiOBHm_Chr2g0116561
rosa_laevigata	RLG00000018287 RLG00000018288
rosa_multiflora	Rmu_sc0001287.1_g000019 Rmu_sc0004191.1_g000022 Rmu_sc0004191.1_g000030
rosa_roxburghii	Rroxscaffold_2G00127060 Rroxscaffold_2G00127070
rosa_rugosa	Rorug02G0207600
rosa_samantha	Rh2AG262500 Rh2AG262600 Rh2BG274100 Rh2BG274400 Rh2DG270700 Rh2DG270800 Rh2DG289200 Rh2DG289300
rosa_wichuraiana	Rw2G020670 Rw2G020680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	244
AccB1I	GGYRCC	1 cut(s)	578
AciI	CCGC	1 cut(s)	425
AcyI	GRCGYC	1 cut(s)	67
AfaI	GTAC	1 cut(s)	413
AfiI	CCNNNNNNNGG	2 cut(s)	37, 199
AgsI	TTSAA	5 cut(s)	92, 122, 479, 586, 604
AluBI	AGCT	6 cut(s)	16, 97, 109, 158, 241, 362
AluI	AGCT	6 cut(s)	16, 97, 109, 158, 241, 362
Alw21I	GWGCWC	1 cut(s)	111
Alw26I	GTCTC	1 cut(s)	122
AlwNI	CAGNNNCTG	1 cut(s)	659
AoxI	GGCC	1 cut(s)	567
AseI	ATTAAT	1 cut(s)	299
Asp700I	GAANNNNTTC	2 cut(s)	216, 612
AspS9I	GGNCC	1 cut(s)	347
AsuII	TTCGAA	1 cut(s)	472
AvaII	GGWCC	1 cut(s)	347
BanI	GGYRCC	1 cut(s)	578
BanII	GRGCYC	1 cut(s)	111
Bbv12I	GWGCWC	1 cut(s)	111
BccI	CCATC	2 cut(s)	305, 337
BcoDI	GTCTC	1 cut(s)	122
BfaI	CTAG	2 cut(s)	558, 596
BfmI	CTRYAG	1 cut(s)	251
BfuAI	ACCTGC	1 cut(s)	244
BmcAI	AGTACT	1 cut(s)	413
Bme18I	GGWCC	1 cut(s)	347
BmgT120I	GGNCC	1 cut(s)	347
BmiI	GGNNCC	3 cut(s)	348, 393, 580
BmrI	ACTGGG	1 cut(s)	647
BmsI	GCATC	3 cut(s)	172, 433, 582
BmuI	ACTGGG	1 cut(s)	647
Bpu14I	TTCGAA	1 cut(s)	472
BpuEI	CTTGAG	1 cut(s)	146
BsaHI	GRCGYC	1 cut(s)	67
BsaJI	CCNNGG	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	2 cut(s)	37, 199
Bse1I	ACTGG	3 cut(s)	350, 395, 653
BseDI	CCNNGG	1 cut(s)	31
BseGI	GGATG	1 cut(s)	348
BseLI	CCNNNNNNNGG	2 cut(s)	37, 199
BseNI	ACTGG	3 cut(s)	350, 395, 653
BshFI	GGCC	1 cut(s)	569
BshNI	GGYRCC	1 cut(s)	578
BsiHKAI	GWGCWC	1 cut(s)	111
BslFI	GGGAC	1 cut(s)	360
BslI	CCNNNNNNNGG	2 cut(s)	37, 199
BsmAI	GTCTC	1 cut(s)	122
BsmFI	GGGAC	1 cut(s)	360
BsmI	GAATGC	1 cut(s)	427
BsnI	GGCC	1 cut(s)	569
Bsp119I	TTCGAA	1 cut(s)	472
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp143I	GATC	2 cut(s)	247, 376
BspACI	CCGC	1 cut(s)	425
BspANI	GGCC	1 cut(s)	569
BspHI	TCATGA	1 cut(s)	244
BspLI	GGNNCC	3 cut(s)	348, 393, 580
BspMAI	CTGCAG	1 cut(s)	255
BspMI	ACCTGC	1 cut(s)	244
BspT104I	TTCGAA	1 cut(s)	472
BspT107I	GGYRCC	1 cut(s)	578
BsrI	ACTGG	3 cut(s)	350, 395, 653
BssECI	CCNNGG	1 cut(s)	31
BssMI	GATC	2 cut(s)	247, 376
BssNI	GRCGYC	1 cut(s)	67
Bst4CI	ACNGT	3 cut(s)	133, 292, 485
BstACI	GRCGYC	1 cut(s)	67
BstBI	TTCGAA	1 cut(s)	472
BstDEI	CTNAG	1 cut(s)	45
BstF5I	GGATG	1 cut(s)	348
BstKTI	GATC	2 cut(s)	250, 379
BstMAI	GTCTC	1 cut(s)	122
BstMBI	GATC	2 cut(s)	247, 376
BstMWI	GCNNNNNNNGC	1 cut(s)	368
BstNSI	RCATGY	1 cut(s)	333
BstSFI	CTRYAG	1 cut(s)	251
BsuRI	GGCC	1 cut(s)	569
BtsCI	GGATG	1 cut(s)	348
BtsIMutI	CAGTG	5 cut(s)	177, 357, 490, 529, 660
BveI	ACCTGC	1 cut(s)	244
CaiI	CAGNNNCTG	1 cut(s)	659
CciI	TCATGA	1 cut(s)	244
Cfr13I	GGNCC	1 cut(s)	347
CseI	GACGC	1 cut(s)	75
Csp6I	GTAC	1 cut(s)	412
CviAII	CATG	5 cut(s)	71, 245, 330, 461, 490
CviQI	GTAC	1 cut(s)	412
DdeI	CTNAG	1 cut(s)	45
DpnI	GATC	2 cut(s)	249, 378
DpnII	GATC	2 cut(s)	247, 376
DraI	TTTAAA	1 cut(s)	147
Ecl136II	GAGCTC	1 cut(s)	109
Eco147I	AGGCCT	1 cut(s)	569
Eco24I	GRGCYC	1 cut(s)	111
Eco32I	GATATC	1 cut(s)	507
Eco47I	GGWCC	1 cut(s)	347
Eco53kI	GAGCTC	1 cut(s)	109
EcoICRI	GAGCTC	1 cut(s)	109
EcoRV	GATATC	1 cut(s)	507
EcoT38I	GRGCYC	1 cut(s)	111
FaeI	CATG	5 cut(s)	74, 248, 333, 464, 493
FaiI	YATR	8 cut(s)	72, 105, 246, 331, 419, 462, 491, 664
FaqI	GGGAC	1 cut(s)	360
FatI	CATG	5 cut(s)	70, 244, 329, 460, 489
FokI	GGATG	1 cut(s)	355
FriOI	GRGCYC	1 cut(s)	111
FspBI	CTAG	2 cut(s)	558, 596
HaeIII	GGCC	1 cut(s)	569
HgaI	GACGC	1 cut(s)	75
Hin1I	GRCGYC	1 cut(s)	67
Hin1II	CATG	5 cut(s)	74, 248, 333, 464, 493
HindIII	AAGCTT	1 cut(s)	239
HinfI	GANTC	6 cut(s)	56, 174, 305, 356, 625, 635
Hpy166II	GTNNAC	1 cut(s)	51
Hpy188I	TCNGA	3 cut(s)	194, 208, 310
Hpy188III	TCNNGA	2 cut(s)	235, 245
Hpy8I	GTNNAC	1 cut(s)	51
HpyAV	CCTTC	2 cut(s)	382, 428
HpyCH4III	ACNGT	3 cut(s)	133, 292, 485
HpyCH4V	TGCA	5 cut(s)	185, 253, 329, 446, 662
HpyF10VI	GCNNNNNNNGC	1 cut(s)	368
HpyF3I	CTNAG	1 cut(s)	45
Hsp92I	GRCGYC	1 cut(s)	67
Hsp92II	CATG	5 cut(s)	74, 248, 333, 464, 493
Kzo9I	GATC	2 cut(s)	247, 376
LmnI	GCTCC	1 cut(s)	13
LpnPI	CCDG	9 cut(s)	124, 220, 237, 239, 363, 408, 483, 522, 645
LweI	GCATC	3 cut(s)	172, 433, 582
MaeI	CTAG	2 cut(s)	558, 596
MaeIII	GTNAC	5 cut(s)	175, 256, 397, 427, 485
MalI	GATC	2 cut(s)	249, 378
MboI	GATC	2 cut(s)	247, 376
MhlI	GDGCHC	1 cut(s)	111
MluCI	AATT	5 cut(s)	296, 300, 324, 468, 474
MlyI	GAGTC	1 cut(s)	183
MnlI	CCTC	2 cut(s)	41, 200
MroXI	GAANNNNTTC	2 cut(s)	216, 612
MseI	TTAA	3 cut(s)	146, 294, 299
Mva1269I	GAATGC	1 cut(s)	427
MwoI	GCNNNNNNNGC	1 cut(s)	368
NdeII	GATC	2 cut(s)	247, 376
NlaIII	CATG	5 cut(s)	74, 248, 333, 464, 493
NlaIV	GGNNCC	3 cut(s)	348, 393, 580
NmeAIII	GCCGAG	1 cut(s)	12
NmuCI	GTSAC	3 cut(s)	175, 427, 485
NspI	RCATGY	1 cut(s)	333
NspV	TTCGAA	1 cut(s)	472
PagI	TCATGA	1 cut(s)	244
PceI	AGGCCT	1 cut(s)	569
PctI	GAATGC	1 cut(s)	427
PdmI	GAANNNNTTC	2 cut(s)	216, 612
PfeI	GAWTC	5 cut(s)	56, 305, 356, 625, 635
PflFI	GACNNNGTC	1 cut(s)	491
PleI	GAGTC	1 cut(s)	182
PpsI	GAGTC	1 cut(s)	182
PshBI	ATTAAT	1 cut(s)	299
Psp124BI	GAGCTC	1 cut(s)	111
PspN4I	GGNNCC	3 cut(s)	348, 393, 580
PspPI	GGNCC	1 cut(s)	347
PstI	CTGCAG	1 cut(s)	255
PstNI	CAGNNNCTG	1 cut(s)	659
PsyI	GACNNNGTC	1 cut(s)	491
RsaI	GTAC	1 cut(s)	413
RsaNI	GTAC	1 cut(s)	412
SacI	GAGCTC	1 cut(s)	111
SaqAI	TTAA	3 cut(s)	146, 294, 299
Sau3AI	GATC	2 cut(s)	247, 376
Sau96I	GGNCC	1 cut(s)	347
ScaI	AGTACT	1 cut(s)	413
SchI	GAGTC	1 cut(s)	183
SduI	GDGCHC	1 cut(s)	111
SfaNI	GCATC	3 cut(s)	172, 433, 582
SfcI	CTRYAG	1 cut(s)	251
SfuI	TTCGAA	1 cut(s)	472
SinI	GGWCC	1 cut(s)	347
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
Sse9I	AATT	5 cut(s)	296, 300, 324, 468, 474
SseBI	AGGCCT	1 cut(s)	569
SsiI	CCGC	1 cut(s)	425
SspMI	CTAG	2 cut(s)	558, 596
SstI	GAGCTC	1 cut(s)	111
StuI	AGGCCT	1 cut(s)	569
TaaI	ACNGT	3 cut(s)	133, 292, 485
TaqI	TCGA	2 cut(s)	111, 472
TasI	AATT	5 cut(s)	296, 300, 324, 468, 474
TatI	WGTACW	1 cut(s)	411
TfiI	GAWTC	5 cut(s)	56, 305, 356, 625, 635
Tru1I	TTAA	3 cut(s)	146, 294, 299
Tru9I	TTAA	3 cut(s)	146, 294, 299
TscAI	CASTG	5 cut(s)	184, 357, 490, 529, 660
TseFI	GTSAC	3 cut(s)	175, 427, 485
Tsp45I	GTSAC	3 cut(s)	175, 427, 485
TspDTI	ATGAA	3 cut(s)	225, 233, 434
TspGWI	ACGGA	1 cut(s)	529
TspRI	CASTG	5 cut(s)	184, 357, 490, 529, 660
Tth111I	GACNNNGTC	1 cut(s)	491
VpaK11BI	GGWCC	1 cut(s)	347
VspI	ATTAAT	1 cut(s)	299
XceI	RCATGY	1 cut(s)	333
XcmI	CCANNNNNNNNNTGG	1 cut(s)	231
XmnI	GAANNNNTTC	2 cut(s)	216, 612
XspI	CTAG	2 cut(s)	558, 596
ZrmI	AGTACT	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.