Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003124

Physical Location & Seq

Genomic Coordinates Reverse (-)

29621780 .. 29630828

Gene Structure 9049 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG270800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1569 bp

ATGTGGCCGCACTCCCTCCCTTCTCCTATAAACTCCCTGCAGCCACCTGTTTCGTACCTACTCTTTCTAACAATGGCCACTGTGTGCACTCCCCACACAATCTCACCCGCTGCCATTGTTTCTTCTTCTCCAGTCCGATGCTCTCACTCCCAATCGCAGCTCCTATTCCGTTCAAATCTCCCGAACTGCCGTCACCACAGCCCGAGCCTCCCGATAATTTCGGCTCCCAATCTCCGCGCCGCTACCAAAGGACAAGTTCTCTGCTCGCAAAACCCTAACCCTACCCCCACGCGCCGCCCCGAATACGTCCCCAACCGCATCCCCGACCCGAACTATATCCGCATCTTCGACACAACGCTCCGCGACGGCGAGCAGTCCCCCGGCGCCTCGCTCACCTCCAAGGAGAAGCTCAACATTGCGCGCCAGCTGGCCAAGCTCGGCGTCGACATAATCGAGGCCGGGTTCCCGGCGGCGTCGAAGGACGACTTCGTAGCCGTGAAGATGATCGCGAAAGAGGTCGGGAATTTTGTGGATAAAGACGGTTATGTCCCTGTGATCTGTGGGCTGTCCAGGTGCATTGAGAAGGATATTAAGACGGCGTGGGAGGCGGTCAAGTATGCAAAGAGGCCGAGGATTCATACTTTCATTGCTACCAGTCCGATTCATATGGAGCATAAGCTGAGGAAGACGAAGGAGCAGGTGATCGAAATGGCGAGGAGTATGGTGAGCTATGCTAAGAGCTTGGGTTGCCAAGATGTCCAGTTTAGCCCGGAAGATGCCGGCAGATCTGAGAAGGAATTTCTATATCAGATTTTAGGTGAAGTTATAAAGGCCGGGGCAACAACTCTGAACATTCCTGACACTGTGGGTTATAACGTGCCAACTGAATTTGGTCAGTTGATTGCTGACATTAAATCTAATACCCCTGGAATTGATGACGTTATCATCTCGGCTCACTGCCACAATGATCTTGGACTTTCTACCGCCAACACTTTAGCGGGGGCAAGTAGAGGTGCTAGGCAATTGGAAGTAACAATCAATGGAATTGGTGAAAGGGCTGGTAATGCTTCATTAGAGGAGGTTGTCATGACCTTAAACTGCCGTGGGGAGCATGTATTTGGGGGGCTTTATACCGGAATAAATCCTCGGCATATTTATATGACAAGCAAGATGGTTTCAGAGTACACTGGAATGCATGTGCAGCAACACAAGGCTATTGTTGGAGCTAATGCTTTTGCACATGAAAGTGGTATCCATCAGGATGGAATGCTCAAGGACAAACGTACATATGAAATTATATCTCCTGAAGATATTGGGTATGACCGGTCCAGTGAAGCTGCCATTGTCCTAGGGAAACTTAGTGGACGCCATGCTTTGAAAAATCAGCTTCAACAGCTTGGTTATGAGCTTGATGATGTTCAACTTGAGACTGTATTCTGGCGCTTCAAAGGAGTAGCTGAACAGAAAAAGAGAGTCACTGATGCAGACCTCAGAGCATTGGTGTCAGATGAAGTTTTTCAGCCAGAAGTTGTCTGGAAGCTTCATGATCCACAGTTCTATTTGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003852 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006551 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009098 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0016053 GO:0016740 GO:0016746 GO:0019752 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046912 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00290 ko00620 ko01100 ko01110 ko01210 ko01230 map00290 map00620 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

HMGL-like LeuA_dimer

Protein Analysis

522

Amino Acids

57.65

Weight (kDa)

7.28

Isoelectric Point (pI)

48.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMGL-like	PF00682	113 - 392	8e-89	HMGL-like
HCS_D2	PF22617	406 - 490	1.3e-28	Homocitrate synthase post-HMGL domain-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18500 AT1G74040 AT1G74040 AT1G74040
fragaria_vesca	FvH4_1g22410 FvH4_1g22460 FvH4_1g22570 FvH4_1g22570 FvH4_1g22570 FvH4_1g22570
malus_domestica	MD01G1019700.v1.1 MD15G1332600.v1.1
prunus_persica	Prupe.6G172500_v2.0.a1 Prupe.6G172500_v2.0.a1 Prupe.6G172500_v2.0.a1
pyrus_communis	pycom01g04920 pycom15g29280
rosa_chinensis	RchiOBHm_Chr2g0116551 RchiOBHm_Chr2g0116561
rosa_laevigata	RLG00000018287 RLG00000018288
rosa_multiflora	Rmu_sc0001287.1_g000019 Rmu_sc0004191.1_g000022 Rmu_sc0004191.1_g000030
rosa_roxburghii	Rroxscaffold_2G00127060 Rroxscaffold_2G00127070
rosa_rugosa	Rorug02G0207600
rosa_samantha	Rh2AG262500 Rh2AG262600 Rh2BG274100 Rh2BG274400 Rh2DG270700 Rh2DG270800 Rh2DG289200 Rh2DG289300
rosa_wichuraiana	Rw2G020670 Rw2G020680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	827, 873
AarI	CACCTGC	1 cut(s)	688
AasI	GACNNNNNNGTC	1 cut(s)	545
Acc36I	ACCTGC	1 cut(s)	688
AccB1I	GGYRCC	1 cut(s)	383
AccI	GTMKAC	1 cut(s)	444
AccII	CGCG	5 cut(s)	237, 292, 363, 421, 509
AclWI	GGATC	1 cut(s)	1541
AcoI	YGGCCR	3 cut(s)	5, 75, 429
AcsI	RAATTY	3 cut(s)	523, 797, 887
AcuI	CTGAAG	1 cut(s)	1326
AcyI	GRCGYC	4 cut(s)	384, 441, 473, 1366
AdeI	CACNNNGTG	1 cut(s)	84
AfaI	GTAC	3 cut(s)	56, 1184, 1285
AgeI	ACCGGT	1 cut(s)	1323
AgsI	TTSAA	6 cut(s)	174, 1378, 1391, 1421, 1447, 1564
AjnI	CCWGG	2 cut(s)	569, 925
Alw21I	GWGCWC	1 cut(s)	89
Alw26I	GTCTC	1 cut(s)	1421
Alw44I	GTGCAC	1 cut(s)	85
AlwI	GGATC	1 cut(s)	1541
Ama87I	CYCGRG	1 cut(s)	202
AoxI	GGCC	6 cut(s)	5, 75, 429, 456, 626, 831
ApaLI	GTGCAC	1 cut(s)	85
ApeKI	GCWGC	5 cut(s)	40, 110, 157, 1201, 1337
ApoI	RAATTY	3 cut(s)	523, 797, 887
AsiGI	ACCGGT	1 cut(s)	1323
Asp700I	GAANNNNTTC	1 cut(s)	1515
AspA2I	CCTAGG	1 cut(s)	1348
AspLEI	GCGC	6 cut(s)	239, 294, 386, 421, 423, 1443
AspS9I	GGNCC	1 cut(s)	1326
AsuC2I	CCSGG	5 cut(s)	381, 460, 467, 770, 835
AsuHPI	GGTGA	7 cut(s)	96, 185, 385, 712, 736, 830, 1061
AvaI	CYCGRG	1 cut(s)	202
AvaII	GGWCC	1 cut(s)	1326
AvrII	CCTAGG	1 cut(s)	1348
BaeGI	GKGCMC	1 cut(s)	89
BalI	TGGCCA	2 cut(s)	77, 431
BanI	GGYRCC	1 cut(s)	383
BbsI	GAAGAC	1 cut(s)	692
Bbv12I	GWGCWC	1 cut(s)	89
BbvCI	CCTCAGC	1 cut(s)	680
BbvI	GCAGC	5 cut(s)	52, 97, 169, 1213, 1324
BccI	CCATC	3 cut(s)	1165, 1256, 1263
BceAI	ACGGC	5 cut(s)	174, 382, 479, 612, 1086
BciT130I	CCWGG	2 cut(s)	571, 927
BciVI	GTATCC	1 cut(s)	1262
BcnI	CCSGG	5 cut(s)	381, 460, 467, 770, 835
BcoDI	GTCTC	1 cut(s)	1421
BfaI	CTAG	2 cut(s)	1017, 1349
BfmI	CTRYAG	1 cut(s)	38
BfoI	RGCGCY	2 cut(s)	387, 1444
BfuAI	ACCTGC	1 cut(s)	688
BfuI	GTATCC	1 cut(s)	1262
BglII	AGATCT	1 cut(s)	785
BisI	GCNGC	9 cut(s)	8, 41, 111, 158, 240, 295, 471, 1202, 1338
BlnI	CCTAGG	1 cut(s)	1348
BlsI	GCNGC	9 cut(s)	9, 42, 112, 159, 241, 296, 472, 1203, 1339
Bme1390I	CCNGG	7 cut(s)	381, 460, 467, 571, 770, 835, 927
Bme18I	GGWCC	1 cut(s)	1326
BmeT110I	CYCGRG	1 cut(s)	202
BmgT120I	GGNCC	1 cut(s)	1326
BmiI	GGNNCC	3 cut(s)	225, 385, 464
BmrFI	CCNGG	7 cut(s)	381, 460, 467, 571, 770, 835, 927
BmsI	GCATC	5 cut(s)	128, 327, 351, 766, 1471
BpiI	GAAGAC	1 cut(s)	692
BpmI	CTGGAG	1 cut(s)	114
Bpu10I	CCTNAGC	1 cut(s)	680
BpuEI	CTTGAG	2 cut(s)	1256, 1445
BpuMI	CCSGG	5 cut(s)	381, 460, 467, 770, 835
BsaHI	GRCGYC	4 cut(s)	384, 441, 473, 1366
BsaJI	CCNNGG	8 cut(s)	379, 399, 629, 834, 925, 1102, 1145, 1348
BsaWI	WCCGGW	2 cut(s)	1133, 1323
Bse118I	RCCGGY	2 cut(s)	779, 1323
Bse1I	ACTGG	5 cut(s)	131, 654, 760, 1192, 1329
Bse3DI	GCAATG	2 cut(s)	414, 645
BseBI	CCWGG	2 cut(s)	571, 927
BseDI	CCNNGG	8 cut(s)	379, 399, 629, 834, 925, 1102, 1145, 1348
BseGI	GGATG	2 cut(s)	318, 1267
BseMI	GCAATG	2 cut(s)	414, 645
BseMII	CTCAG	3 cut(s)	671, 780, 1504
BseNI	ACTGG	5 cut(s)	131, 654, 760, 1192, 1329
BsePI	GCGCGC	1 cut(s)	419
BseRI	GAGGAG	2 cut(s)	730, 1091
BseSI	GKGCMC	1 cut(s)	89
BseXI	GCAGC	5 cut(s)	52, 97, 169, 1213, 1324
BsgI	GTGCAG	1 cut(s)	1220
Bsh1236I	CGCG	5 cut(s)	237, 292, 363, 421, 509
BshFI	GGCC	6 cut(s)	7, 77, 431, 458, 628, 833
BshNI	GGYRCC	1 cut(s)	383
BshTI	ACCGGT	1 cut(s)	1323
BsiHKAI	GWGCWC	1 cut(s)	89
BsiHKCI	CYCGRG	1 cut(s)	202
BsiSI	CCGG	8 cut(s)	381, 459, 467, 770, 780, 834, 1134, 1324
BslFI	GGGAC	3 cut(s)	293, 361, 533
BsmAI	GTCTC	1 cut(s)	1421
BsmFI	GGGAC	3 cut(s)	293, 361, 533
BsmI	GAATGC	2 cut(s)	1197, 1272
BsnI	GGCC	6 cut(s)	7, 77, 431, 458, 628, 833
BsoBI	CYCGRG	1 cut(s)	202
Bsp1286I	GDGCHC	1 cut(s)	89
Bsp143I	GATC	6 cut(s)	504, 555, 702, 785, 967, 1546
Bsp68I	TCGCGA	1 cut(s)	509
BspANI	GGCC	6 cut(s)	7, 77, 431, 458, 628, 833
BspCNI	CTCAG	3 cut(s)	672, 781, 1503
BspFNI	CGCG	5 cut(s)	237, 292, 363, 421, 509
BspHI	TCATGA	2 cut(s)	1086, 1543
BspLI	GGNNCC	3 cut(s)	225, 385, 464
BspMAI	CTGCAG	1 cut(s)	42
BspMI	ACCTGC	1 cut(s)	688
BspPI	GGATC	1 cut(s)	1541
BspT107I	GGYRCC	1 cut(s)	383
BsrDI	GCAATG	2 cut(s)	414, 645
BsrFI	RCCGGY	2 cut(s)	779, 1323
BsrI	ACTGG	5 cut(s)	131, 654, 760, 1192, 1329
BssAI	RCCGGY	2 cut(s)	779, 1323
BssECI	CCNNGG	8 cut(s)	379, 399, 629, 834, 925, 1102, 1145, 1348
BssHII	GCGCGC	1 cut(s)	419
BssMI	GATC	6 cut(s)	504, 555, 702, 785, 967, 1546
BssNI	GRCGYC	4 cut(s)	384, 441, 473, 1366
BssT1I	CCWWGG	2 cut(s)	399, 1348
Bst2UI	CCWGG	2 cut(s)	571, 927
Bst4CI	ACNGT	5 cut(s)	82, 542, 865, 1432, 1554
BstACI	GRCGYC	4 cut(s)	384, 441, 473, 1366
BstC8I	GCNNGC	6 cut(s)	266, 371, 421, 425, 429, 781
BstDEI	CTNAG	5 cut(s)	680, 735, 789, 1358, 1490
BstDSI	CCRYGG	1 cut(s)	1102
BstF5I	GGATG	2 cut(s)	318, 1267
BstFNI	CGCG	5 cut(s)	237, 292, 363, 421, 509
BstH2I	RGCGCY	2 cut(s)	387, 1444
BstHHI	GCGC	6 cut(s)	239, 294, 386, 421, 423, 1443
BstKTI	GATC	6 cut(s)	507, 558, 705, 788, 970, 1549
BstMAI	GTCTC	1 cut(s)	1421
BstMBI	GATC	6 cut(s)	504, 555, 702, 785, 967, 1546
BstMWI	GCNNNNNNNGC	6 cut(s)	433, 605, 747, 1064, 1201, 1393
BstNI	CCWGG	2 cut(s)	571, 927
BstNSI	RCATGY	2 cut(s)	1115, 1199
BstSCI	CCNGG	7 cut(s)	379, 458, 465, 569, 768, 833, 925
BstSFI	CTRYAG	1 cut(s)	38
BstSLI	GKGCMC	1 cut(s)	89
BstUI	CGCG	5 cut(s)	237, 292, 363, 421, 509
BstV1I	GCAGC	5 cut(s)	52, 97, 169, 1213, 1324
BstV2I	GAAGAC	1 cut(s)	692
BstX2I	RGATCY	1 cut(s)	785
BstXI	CCANNNNNNTGG	1 cut(s)	1262
BstYI	RGATCY	1 cut(s)	785
BsuI	GTATCC	1 cut(s)	1262
BsuRI	GGCC	6 cut(s)	7, 77, 431, 458, 628, 833
BtgI	CCRYGG	1 cut(s)	1102
BtsCI	GGATG	2 cut(s)	318, 1267
BtsI	GCAGTG	1 cut(s)	955
BtsIMutI	CAGTG	6 cut(s)	78, 861, 955, 1185, 1336, 1476
BtuMI	TCGCGA	1 cut(s)	509
BveI	ACCTGC	1 cut(s)	688
Cac8I	GCNNGC	6 cut(s)	266, 371, 421, 425, 429, 781
CciI	TCATGA	2 cut(s)	1086, 1543
CfoI	GCGC	6 cut(s)	239, 294, 386, 421, 423, 1443
Cfr10I	RCCGGY	2 cut(s)	779, 1323
Cfr13I	GGNCC	1 cut(s)	1326
CseI	GACGC	3 cut(s)	430, 462, 1374
Csp6I	GTAC	3 cut(s)	55, 1183, 1284
CspAI	ACCGGT	1 cut(s)	1323
CviAII	CATG	6 cut(s)	1087, 1112, 1196, 1241, 1370, 1544
CviQI	GTAC	3 cut(s)	55, 1183, 1284
DdeI	CTNAG	5 cut(s)	680, 735, 789, 1358, 1490
DinI	GGCGCC	1 cut(s)	385
DpnI	GATC	6 cut(s)	506, 557, 704, 787, 969, 1548
DpnII	GATC	6 cut(s)	504, 555, 702, 785, 967, 1546
DraIII	CACNNNGTG	1 cut(s)	84
DrdI	GACNNNNNNGTC	1 cut(s)	545
DseDI	GACNNNNNNGTC	1 cut(s)	545
EaeI	YGGCCR	3 cut(s)	5, 75, 429
Eco130I	CCWWGG	2 cut(s)	399, 1348
Eco47I	GGWCC	1 cut(s)	1326
Eco57I	CTGAAG	1 cut(s)	1326
Eco88I	CYCGRG	1 cut(s)	202
EcoRII	CCWGG	2 cut(s)	569, 925
EcoT14I	CCWWGG	2 cut(s)	399, 1348
EcoT22I	ATGCAT	1 cut(s)	1197
EgeI	GGCGCC	1 cut(s)	385
EheI	GGCGCC	1 cut(s)	385
ErhI	CCWWGG	2 cut(s)	399, 1348
FaeI	CATG	6 cut(s)	1090, 1115, 1199, 1244, 1373, 1547
FalI	AAGNNNNNCTT	2 cut(s)	470, 502
FaqI	GGGAC	3 cut(s)	293, 361, 533
FatI	CATG	6 cut(s)	1086, 1111, 1195, 1240, 1369, 1543
FauI	CCCGC	2 cut(s)	115, 991
FauNDI	CATATG	2 cut(s)	666, 1288
FblI	GTMKAC	1 cut(s)	444
Fnu4HI	GCNGC	9 cut(s)	8, 41, 111, 158, 240, 295, 471, 1202, 1338
FokI	GGATG	2 cut(s)	305, 1274
Fsp4HI	GCNGC	9 cut(s)	8, 41, 111, 158, 240, 295, 471, 1202, 1338
FspBI	CTAG	2 cut(s)	1017, 1349
GlaI	GCGC	6 cut(s)	238, 293, 385, 420, 422, 1442
GluI	GCNGC	9 cut(s)	8, 41, 111, 158, 240, 295, 471, 1202, 1338
GsuI	CTGGAG	1 cut(s)	114
HaeII	RGCGCY	2 cut(s)	387, 1444
HaeIII	GGCC	6 cut(s)	7, 77, 431, 458, 628, 833
HapII	CCGG	8 cut(s)	381, 459, 467, 770, 780, 834, 1134, 1324
HgaI	GACGC	3 cut(s)	430, 462, 1374
HhaI	GCGC	6 cut(s)	239, 294, 386, 421, 423, 1443
Hin1I	GRCGYC	4 cut(s)	384, 441, 473, 1366
Hin1II	CATG	6 cut(s)	1090, 1115, 1199, 1244, 1373, 1547
Hin6I	GCGC	6 cut(s)	237, 292, 384, 419, 421, 1441
HinP1I	GCGC	6 cut(s)	237, 292, 384, 419, 421, 1441
HincII	GTYRAC	1 cut(s)	445
HindII	GTYRAC	1 cut(s)	445
HindIII	AAGCTT	1 cut(s)	1538
HinfI	GANTC	3 cut(s)	634, 661, 1473
HpaII	CCGG	8 cut(s)	381, 459, 467, 770, 780, 834, 1134, 1324
HphI	GGTGA	7 cut(s)	96, 185, 385, 712, 736, 830, 1061
Hpy166II	GTNNAC	4 cut(s)	87, 445, 1185, 1364
Hpy188I	TCNGA	8 cut(s)	137, 660, 790, 810, 849, 1180, 1493, 1507
Hpy8I	GTNNAC	4 cut(s)	87, 445, 1185, 1364
Hpy99I	CGWCG	3 cut(s)	368, 446, 478
HpyAV	CCTTC	5 cut(s)	30, 472, 577, 685, 787
HpyCH4III	ACNGT	5 cut(s)	82, 542, 865, 1432, 1554
HpyCH4IV	ACGT	4 cut(s)	306, 876, 939, 1282
HpyCH4V	TGCA	8 cut(s)	40, 87, 576, 620, 1195, 1201, 1238, 1484
HpyF10VI	GCNNNNNNNGC	6 cut(s)	433, 605, 747, 1064, 1201, 1393
HpyF3I	CTNAG	5 cut(s)	680, 735, 789, 1358, 1490
HpySE526I	ACGT	4 cut(s)	306, 876, 939, 1282
Hsp92I	GRCGYC	4 cut(s)	384, 441, 473, 1366
Hsp92II	CATG	6 cut(s)	1090, 1115, 1199, 1244, 1373, 1547
HspAI	GCGC	6 cut(s)	237, 292, 384, 419, 421, 1441
KasI	GGCGCC	1 cut(s)	383
KroI	GCCGGC	1 cut(s)	779
KroNI	GCCGGC	1 cut(s)	781
Kzo9I	GATC	6 cut(s)	504, 555, 702, 785, 967, 1546
LmnI	GCTCC	7 cut(s)	165, 229, 363, 670, 694, 1108, 1223
Lsp1109I	GCAGC	5 cut(s)	52, 97, 169, 1213, 1324
LweI	GCATC	5 cut(s)	128, 327, 351, 766, 1471
MaeI	CTAG	2 cut(s)	1017, 1349
MaeII	ACGT	4 cut(s)	306, 876, 939, 1282
MaeIII	GTNAC	3 cut(s)	191, 1030, 1474
MalI	GATC	6 cut(s)	506, 557, 704, 787, 969, 1548
MboI	GATC	6 cut(s)	504, 555, 702, 785, 967, 1546
MboII	GAAGA	7 cut(s)	114, 117, 337, 511, 697, 785, 1319
MfeI	CAATTG	1 cut(s)	1022
MflI	RGATCY	1 cut(s)	785
MhlI	GDGCHC	1 cut(s)	89
MlsI	TGGCCA	2 cut(s)	77, 431
MluCI	AATT	9 cut(s)	216, 523, 797, 887, 930, 1022, 1044, 1293, 1564
MluNI	TGGCCA	2 cut(s)	77, 431
Mly113I	GGCGCC	1 cut(s)	384
MlyI	GAGTC	1 cut(s)	1482
MmeI	TCCRAC	1 cut(s)	1201
Mox20I	TGGCCA	2 cut(s)	77, 431
Mph1103I	ATGCAT	1 cut(s)	1197
MroNI	GCCGGC	1 cut(s)	779
MroXI	GAANNNNTTC	1 cut(s)	1515
MscI	TGGCCA	2 cut(s)	77, 431
MseI	TTAA	3 cut(s)	591, 912, 1094
MslI	CAYNNNNRTG	3 cut(s)	1190, 1245, 1260
Msp20I	TGGCCA	2 cut(s)	77, 431
MspA1I	CMGCKG	2 cut(s)	110, 427
MspI	CCGG	8 cut(s)	381, 459, 467, 770, 780, 834, 1134, 1324
MspR9I	CCNGG	7 cut(s)	381, 460, 467, 571, 770, 835, 927
MunI	CAATTG	1 cut(s)	1022
Mva1269I	GAATGC	2 cut(s)	1197, 1272
MvaI	CCWGG	2 cut(s)	571, 927
MvnI	CGCG	5 cut(s)	237, 292, 363, 421, 509
MwoI	GCNNNNNNNGC	6 cut(s)	433, 605, 747, 1064, 1201, 1393
NaeI	GCCGGC	1 cut(s)	781
NarI	GGCGCC	1 cut(s)	384
NciI	CCSGG	5 cut(s)	381, 460, 467, 770, 835
NdeI	CATATG	2 cut(s)	666, 1288
NdeII	GATC	6 cut(s)	504, 555, 702, 785, 967, 1546
NgoMIV	GCCGGC	1 cut(s)	779
NlaIII	CATG	6 cut(s)	1090, 1115, 1199, 1244, 1373, 1547
NlaIV	GGNNCC	3 cut(s)	225, 385, 464
NmeAIII	GCCGAG	4 cut(s)	417, 654, 929, 1126
NmuCI	GTSAC	2 cut(s)	191, 1474
NruI	TCGCGA	1 cut(s)	509
NsiI	ATGCAT	1 cut(s)	1197
NspI	RCATGY	2 cut(s)	1115, 1199
PagI	TCATGA	2 cut(s)	1086, 1543
PaqCI	CACCTGC	1 cut(s)	688
PauI	GCGCGC	1 cut(s)	419
PcsI	WCGNNNNNNNCGW	1 cut(s)	450
PctI	GAATGC	2 cut(s)	1197, 1272
PdiI	GCCGGC	1 cut(s)	781
PdmI	GAANNNNTTC	1 cut(s)	1515
PfeI	GAWTC	2 cut(s)	634, 661
PinAI	ACCGGT	1 cut(s)	1323
PkrI	GCNGC	9 cut(s)	9, 42, 112, 159, 241, 296, 472, 1203, 1339
PleI	GAGTC	1 cut(s)	1481
PluTI	GGCGCC	1 cut(s)	387
PpsI	GAGTC	1 cut(s)	1481
PsiI	TTATAA	2 cut(s)	827, 873
Psp6I	CCWGG	2 cut(s)	569, 925
PspGI	CCWGG	2 cut(s)	569, 925
PspN4I	GGNNCC	3 cut(s)	225, 385, 464
PspPI	GGNCC	1 cut(s)	1326
PstI	CTGCAG	1 cut(s)	42
PsuI	RGATCY	1 cut(s)	785
PteI	GCGCGC	1 cut(s)	419
PvuII	CAGCTG	1 cut(s)	427
RruI	TCGCGA	1 cut(s)	509
RsaI	GTAC	3 cut(s)	56, 1184, 1285
RsaNI	GTAC	3 cut(s)	55, 1183, 1284
RseI	CAYNNNNRTG	3 cut(s)	1190, 1245, 1260
SalI	GTCGAC	1 cut(s)	443
SaqAI	TTAA	3 cut(s)	591, 912, 1094
SatI	GCNGC	9 cut(s)	8, 41, 111, 158, 240, 295, 471, 1202, 1338
Sau3AI	GATC	6 cut(s)	504, 555, 702, 785, 967, 1546
Sau96I	GGNCC	1 cut(s)	1326
SchI	GAGTC	1 cut(s)	1482
ScrFI	CCNGG	7 cut(s)	381, 460, 467, 571, 770, 835, 927
SduI	GDGCHC	1 cut(s)	89
SfaNI	GCATC	5 cut(s)	128, 327, 351, 766, 1471
SfcI	CTRYAG	1 cut(s)	38
SfoI	GGCGCC	1 cut(s)	385
SinI	GGWCC	1 cut(s)	1326
SmiMI	CAYNNNNRTG	3 cut(s)	1190, 1245, 1260
SmlI	CTYRAG	2 cut(s)	1271, 1424
SmoI	CTYRAG	2 cut(s)	1271, 1424
Sse9I	AATT	9 cut(s)	216, 523, 797, 887, 930, 1022, 1044, 1293, 1564
SspDI	GGCGCC	1 cut(s)	383
SspMI	CTAG	2 cut(s)	1017, 1349
StyD4I	CCNGG	7 cut(s)	379, 458, 465, 569, 768, 833, 925
StyI	CCWWGG	2 cut(s)	399, 1348
TaaI	ACNGT	5 cut(s)	82, 542, 865, 1432, 1554
TaiI	ACGT	4 cut(s)	309, 879, 942, 1285
TaqI	TCGA	5 cut(s)	348, 444, 453, 476, 705
TasI	AATT	9 cut(s)	216, 523, 797, 887, 930, 1022, 1044, 1293, 1564
TatI	WGTACW	1 cut(s)	1182
TauI	GCSGC	4 cut(s)	10, 242, 297, 473
TfiI	GAWTC	2 cut(s)	634, 661
Tru1I	TTAA	3 cut(s)	591, 912, 1094
Tru9I	TTAA	3 cut(s)	591, 912, 1094
TscAI	CASTG	6 cut(s)	85, 868, 962, 1192, 1336, 1483
TseFI	GTSAC	2 cut(s)	191, 1474
TseI	GCWGC	5 cut(s)	40, 110, 157, 1201, 1337
Tsp45I	GTSAC	2 cut(s)	191, 1474
TspDTI	ATGAA	8 cut(s)	626, 634, 653, 1059, 1257, 1305, 1524, 1532
TspGWI	ACGGA	1 cut(s)	158
TspRI	CASTG	6 cut(s)	85, 868, 962, 1192, 1336, 1483
VneI	GTGCAC	1 cut(s)	85
VpaK11BI	GGWCC	1 cut(s)	1326
XapI	RAATTY	3 cut(s)	523, 797, 887
XceI	RCATGY	2 cut(s)	1115, 1199
XcmI	CCANNNNNNNNNTGG	2 cut(s)	968, 1530
XmaJI	CCTAGG	1 cut(s)	1348
XmiI	GTMKAC	1 cut(s)	444
XmnI	GAANNNNTTC	1 cut(s)	1515
XspI	CTAG	2 cut(s)	1017, 1349
Zsp2I	ATGCAT	1 cut(s)	1197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.