Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0003124

Physical Location & Seq

Genomic Coordinates Reverse (-)

4245446 .. 4252476

Gene Structure 7031 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g04920.10

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGTTATCATTTCTACTCACTGCCAAAATCGATCTTGGACTTTCTACTGCCAACACTTTAGCGGGGGCATGTGCAGGTGCTAGGCAATTGGAAGTAACAATCAATGGCATTGGTGAAAGGGCTGGGAATGCTTCATTAGAGGAGGTTGTCTTGACCTTAAATTGCCGCGGGGAGCATGTTCTTGGGGGCCTTTATACCGGAATCAATACTAAGCATATCTATGTAACAAGCAAGATGGTGGAAGAGTACACTGGGTTGCATGTGCAGCCACACAAGGCTATTGTTGGAGCTAATGCTTTTGCACATGAAAGTGGTATCCATCAGGATGGAATGCTTAAACACAAAGGCACATACGAAATTATATCTCCTGAAGATATTGGGTATGAACGGTCCAATGAAGCTGGTATTGTTCTTGGGAAACTCAGTGGACGTCATGCTTTGAGAAACCGACTTGCAGAGCTTGGCTATGAGCTTGAGAATGATCAACTTGCTACTATATTCGAGCGTTTCAAAGCTGTAGCCGAACAGAAAAAGAGTATAACTGATGCAGATCTCGGAGCATTGGTGCGAGATGAAGTTTTTCAGCCAGAAGTTGTCTGGAAGCTTCATGATCTACAGGTTACCTGTGGAACTCTTGGTCTGTCTACAGCAACTATTAAACTAATTGATGCTGATGGGAGAGAACATGTGGCATGTTCAGTTGGAACAGGTCCCGTAGATTCAGCTTACAAGGCTGTTGATCTGATTGTGAAGGAACCGGTAACGCTCATTGAGTACTCTATGAATGCGGTAACAGAAGGAATTGATGCAATTGCTACTACTCGTGTGGTAATCCGACTGGAAAACAGTCATACGGTTACTCATGCTCAAACTGGAGAATCAGTCCAGCGGACATTCAGTGGAATTGGGGCAGGAATGGATATTGTTGTCTCTAGTGTCAAGGCCTACATCGGTGCATTGAATAAGATGATGGGTTTCAAGGAAAGGTCGCCGCCAAAGTTTCCAGCTGAACGAAAAAAAGTGTCTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003852 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006551 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009098 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0016053 GO:0016740 GO:0016746 GO:0019752 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046912 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00290 ko00620 ko01100 ko01110 ko01210 ko01230 map00290 map00620 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

HMGL-like LeuA_dimer

Protein Analysis

344

Amino Acids

36.9

Weight (kDa)

6.07

Isoelectric Point (pI)

23.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18500 AT1G74040 AT1G74040 AT1G74040
fragaria_vesca	FvH4_1g22410 FvH4_1g22460 FvH4_1g22570 FvH4_1g22570 FvH4_1g22570 FvH4_1g22570
malus_domestica	MD01G1019700.v1.1 MD15G1332600.v1.1
prunus_persica	Prupe.6G172500_v2.0.a1 Prupe.6G172500_v2.0.a1 Prupe.6G172500_v2.0.a1
pyrus_communis	pycom01g04920 pycom15g29280
rosa_chinensis	RchiOBHm_Chr2g0116551 RchiOBHm_Chr2g0116561
rosa_laevigata	RLG00000018287 RLG00000018288
rosa_multiflora	Rmu_sc0001287.1_g000019 Rmu_sc0004191.1_g000022 Rmu_sc0004191.1_g000030
rosa_roxburghii	Rroxscaffold_2G00127060 Rroxscaffold_2G00127070
rosa_rugosa	Rorug02G0207600
rosa_samantha	Rh2AG262500 Rh2AG262600 Rh2BG274100 Rh2BG274400 Rh2DG270700 Rh2DG270800 Rh2DG289200 Rh2DG289300
rosa_wichuraiana	Rw2G020670 Rw2G020680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	65
AatII	GACGTC	1 cut(s)	433
Acc36I	ACCTGC	1 cut(s)	65
AccI	GTMKAC	1 cut(s)	644
AccII	CGCG	1 cut(s)	168
AciI	CCGC	6 cut(s)	62, 166, 168, 788, 889, 992
AcuI	CTGAAG	1 cut(s)	390
AcyI	GRCGYC	1 cut(s)	430
AfaI	GTAC	2 cut(s)	248, 776
AflIII	ACRYGT	1 cut(s)	685
AgeI	ACCGGT	1 cut(s)	757
AgsI	TTSAA	3 cut(s)	511, 961, 979
AluBI	AGCT	8 cut(s)	290, 401, 460, 472, 515, 604, 725, 1007
AluI	AGCT	8 cut(s)	290, 401, 460, 472, 515, 604, 725, 1007
Alw26I	GTCTC	1 cut(s)	934
AoxI	GGCC	2 cut(s)	187, 942
ApeKI	GCWGC	1 cut(s)	265
AsiGI	ACCGGT	1 cut(s)	757
Asp700I	GAANNNNTTC	1 cut(s)	579
AspS9I	GGNCC	3 cut(s)	187, 390, 710
AsuHPI	GGTGA	1 cut(s)	125
AvaII	GGWCC	2 cut(s)	390, 710
BauI	CACGAG	1 cut(s)	822
BbvI	GCAGC	1 cut(s)	277
BccI	CCATC	5 cut(s)	229, 320, 327, 668, 964
BciVI	GTATCC	1 cut(s)	326
BclI	TGATCA	1 cut(s)	481
BcoDI	GTCTC	1 cut(s)	934
BfaI	CTAG	2 cut(s)	81, 933
BfmI	CTRYAG	3 cut(s)	516, 614, 645
BfuAI	ACCTGC	1 cut(s)	65
BfuI	GTATCC	1 cut(s)	326
BglII	AGATCT	1 cut(s)	550
BisI	GCNGC	3 cut(s)	166, 266, 992
BlsI	GCNGC	3 cut(s)	167, 267, 993
BmcAI	AGTACT	1 cut(s)	776
Bme18I	GGWCC	2 cut(s)	390, 710
BmgT120I	GGNCC	3 cut(s)	187, 390, 710
BmiI	GGNNCC	3 cut(s)	188, 712, 756
BmrI	ACTGGG	1 cut(s)	261
BmsI	GCATC	3 cut(s)	535, 658, 796
BmuI	ACTGGG	1 cut(s)	261
BpmI	CTGGAG	1 cut(s)	894
BpuEI	CTTGAG	1 cut(s)	494
Bsa29I	ATCGAT	1 cut(s)	30
BsaBI	GATNNNNATC	1 cut(s)	549
BsaHI	GRCGYC	1 cut(s)	430
BsaJI	CCNNGG	1 cut(s)	166
BsaWI	WCCGGW	2 cut(s)	197, 757
BsaXI	ACNNNNNCTCC	4 cut(s)	549, 579, 867, 897
Bse118I	RCCGGY	1 cut(s)	757
Bse1I	ACTGG	3 cut(s)	256, 843, 877
Bse8I	GATNNNNATC	1 cut(s)	549
BseCI	ATCGAT	1 cut(s)	30
BseDI	CCNNGG	1 cut(s)	166
BseGI	GGATG	1 cut(s)	331
BseJI	GATNNNNATC	1 cut(s)	549
BseMII	CTCAG	1 cut(s)	436
BseNI	ACTGG	3 cut(s)	256, 843, 877
BseRI	GAGGAG	1 cut(s)	155
BseXI	GCAGC	1 cut(s)	277
BseYI	CCCAGC	1 cut(s)	122
BsgI	GTGCAG	2 cut(s)	93, 284
Bsh1236I	CGCG	1 cut(s)	168
BshFI	GGCC	2 cut(s)	189, 944
BshTI	ACCGGT	1 cut(s)	757
BshVI	ATCGAT	1 cut(s)	30
BsiSI	CCGG	2 cut(s)	198, 758
BslFI	GGGAC	1 cut(s)	696
BsmAI	GTCTC	1 cut(s)	934
BsmFI	GGGAC	1 cut(s)	696
BsmI	GAATGC	3 cut(s)	133, 336, 790
BsnI	GGCC	2 cut(s)	189, 944
Bsp143I	GATC	5 cut(s)	31, 481, 550, 610, 739
BspACI	CCGC	6 cut(s)	62, 166, 168, 788, 889, 992
BspANI	GGCC	2 cut(s)	189, 944
BspCNI	CTCAG	1 cut(s)	435
BspDI	ATCGAT	1 cut(s)	30
BspFNI	CGCG	1 cut(s)	168
BspHI	TCATGA	1 cut(s)	607
BspLI	GGNNCC	3 cut(s)	188, 712, 756
BspMI	ACCTGC	1 cut(s)	65
BsrFI	RCCGGY	1 cut(s)	757
BsrI	ACTGG	3 cut(s)	256, 843, 877
BssAI	RCCGGY	1 cut(s)	757
BssECI	CCNNGG	1 cut(s)	166
BssMI	GATC	5 cut(s)	31, 481, 550, 610, 739
BssNI	GRCGYC	1 cut(s)	430
BssSI	CACGAG	1 cut(s)	822
Bst2BI	CACGAG	1 cut(s)	822
Bst4CI	ACNGT	3 cut(s)	390, 848, 856
Bst6I	CTCTTC	1 cut(s)	237
BstACI	GRCGYC	1 cut(s)	430
BstDEI	CTNAG	2 cut(s)	210, 422
BstDSI	CCRYGG	1 cut(s)	166
BstEII	GGTNACC	1 cut(s)	619
BstF5I	GGATG	1 cut(s)	331
BstFNI	CGCG	1 cut(s)	168
BstKTI	GATC	5 cut(s)	34, 484, 553, 613, 742
BstMAI	GTCTC	1 cut(s)	934
BstMBI	GATC	5 cut(s)	31, 481, 550, 610, 739
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 265, 731
BstNSI	RCATGY	5 cut(s)	72, 179, 263, 689, 696
BstPI	GGTNACC	1 cut(s)	619
BstSFI	CTRYAG	3 cut(s)	516, 614, 645
BstUI	CGCG	1 cut(s)	168
BstV1I	GCAGC	1 cut(s)	277
BstX2I	RGATCY	1 cut(s)	550
BstXI	CCANNNNNNTGG	1 cut(s)	326
BstYI	RGATCY	1 cut(s)	550
Bsu15I	ATCGAT	1 cut(s)	30
BsuI	GTATCC	1 cut(s)	326
BsuRI	GGCC	2 cut(s)	189, 944
BsuTUI	ATCGAT	1 cut(s)	30
BtgI	CCRYGG	1 cut(s)	166
BtsCI	GGATG	1 cut(s)	331
BtsI	GCAGTG	1 cut(s)	18
BtsIMutI	CAGTG	4 cut(s)	18, 249, 430, 904
BveI	ACCTGC	1 cut(s)	65
CciI	TCATGA	1 cut(s)	607
Cfr10I	RCCGGY	1 cut(s)	757
Cfr13I	GGNCC	3 cut(s)	187, 390, 710
Cfr42I	CCGCGG	1 cut(s)	169
ClaI	ATCGAT	1 cut(s)	30
Csp6I	GTAC	2 cut(s)	247, 775
CspAI	ACCGGT	1 cut(s)	757
CviQI	GTAC	2 cut(s)	247, 775
DdeI	CTNAG	2 cut(s)	210, 422
DpnI	GATC	5 cut(s)	33, 483, 552, 612, 741
DpnII	GATC	5 cut(s)	31, 481, 550, 610, 739
Eam1104I	CTCTTC	1 cut(s)	237
EarI	CTCTTC	1 cut(s)	237
Eco147I	AGGCCT	1 cut(s)	944
Eco47I	GGWCC	2 cut(s)	390, 710
Eco57I	CTGAAG	1 cut(s)	390
Eco91I	GGTNACC	1 cut(s)	619
EcoO109I	RGGNCCY	2 cut(s)	187, 710
EcoO65I	GGTNACC	1 cut(s)	619
FaqI	GGGAC	1 cut(s)	696
FauI	CCCGC	2 cut(s)	55, 161
FbaI	TGATCA	1 cut(s)	481
FblI	GTMKAC	1 cut(s)	644
Fnu4HI	GCNGC	3 cut(s)	166, 266, 992
FokI	GGATG	1 cut(s)	338
Fsp4HI	GCNGC	3 cut(s)	166, 266, 992
FspBI	CTAG	2 cut(s)	81, 933
GluI	GCNGC	3 cut(s)	166, 266, 992
GsaI	CCCAGC	1 cut(s)	126
GsuI	CTGGAG	1 cut(s)	894
HaeIII	GGCC	2 cut(s)	189, 944
HapII	CCGG	2 cut(s)	198, 758
Hin1I	GRCGYC	1 cut(s)	430
HindIII	AAGCTT	1 cut(s)	602
HinfI	GANTC	3 cut(s)	201, 719, 878
HpaII	CCGG	2 cut(s)	198, 758
HphI	GGTGA	1 cut(s)	125
Hpy166II	GTNNAC	3 cut(s)	249, 428, 645
Hpy188I	TCNGA	3 cut(s)	557, 744, 836
Hpy188III	TCNNGA	5 cut(s)	151, 323, 368, 598, 608
Hpy8I	GTNNAC	3 cut(s)	249, 428, 645
HpyAV	CCTTC	2 cut(s)	745, 791
HpyCH4III	ACNGT	3 cut(s)	390, 848, 856
HpyCH4IV	ACGT	1 cut(s)	430
HpyCH4V	TGCA	9 cut(s)	74, 259, 265, 302, 455, 548, 809, 956, 1028
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 265, 731
HpyF3I	CTNAG	2 cut(s)	210, 422
HpySE526I	ACGT	1 cut(s)	430
Hsp92I	GRCGYC	1 cut(s)	430
Ksp22I	TGATCA	1 cut(s)	481
KspI	CCGCGG	1 cut(s)	169
Kzo9I	GATC	5 cut(s)	31, 481, 550, 610, 739
LmnI	GCTCC	3 cut(s)	172, 287, 557
Lsp1109I	GCAGC	1 cut(s)	277
LweI	GCATC	3 cut(s)	535, 658, 796
MaeI	CTAG	2 cut(s)	81, 933
MaeII	ACGT	1 cut(s)	430
MaeIII	GTNAC	6 cut(s)	94, 223, 619, 760, 790, 856
MalI	GATC	5 cut(s)	33, 483, 552, 612, 741
MboI	GATC	5 cut(s)	31, 481, 550, 610, 739
MboII	GAAGA	2 cut(s)	254, 383
MfeI	CAATTG	2 cut(s)	86, 810
MflI	RGATCY	1 cut(s)	550
MluCI	AATT	7 cut(s)	86, 160, 357, 663, 801, 810, 903
MmeI	TCCRAC	3 cut(s)	265, 682, 859
MnlI	CCTC	2 cut(s)	133, 136
MroXI	GAANNNNTTC	1 cut(s)	579
MseI	TTAA	3 cut(s)	158, 336, 657
MslI	CAYNNNNRTG	3 cut(s)	219, 309, 324
MspA1I	CMGCKG	3 cut(s)	168, 889, 1007
MspI	CCGG	2 cut(s)	198, 758
MunI	CAATTG	2 cut(s)	86, 810
Mva1269I	GAATGC	3 cut(s)	133, 336, 790
MvnI	CGCG	1 cut(s)	168
MwoI	GCNNNNNNNGC	3 cut(s)	128, 265, 731
NdeII	GATC	5 cut(s)	31, 481, 550, 610, 739
NlaIV	GGNNCC	3 cut(s)	188, 712, 756
NspI	RCATGY	5 cut(s)	72, 179, 263, 689, 696
PagI	TCATGA	1 cut(s)	607
PaqCI	CACCTGC	1 cut(s)	65
PceI	AGGCCT	1 cut(s)	944
PciI	ACATGT	1 cut(s)	685
PctI	GAATGC	3 cut(s)	133, 336, 790
PdmI	GAANNNNTTC	1 cut(s)	579
PfeI	GAWTC	3 cut(s)	201, 719, 878
PinAI	ACCGGT	1 cut(s)	757
PkrI	GCNGC	3 cut(s)	167, 267, 993
PpuMI	RGGWCCY	1 cut(s)	710
PscI	ACATGT	1 cut(s)	685
Psp5II	RGGWCCY	1 cut(s)	710
PspEI	GGTNACC	1 cut(s)	619
PspFI	CCCAGC	1 cut(s)	122
PspN4I	GGNNCC	3 cut(s)	188, 712, 756
PspPI	GGNCC	3 cut(s)	187, 390, 710
PspPPI	RGGWCCY	1 cut(s)	710
PsuI	RGATCY	1 cut(s)	550
PvuII	CAGCTG	1 cut(s)	1007
RsaI	GTAC	2 cut(s)	248, 776
RsaNI	GTAC	2 cut(s)	247, 775
RseI	CAYNNNNRTG	3 cut(s)	219, 309, 324
SacII	CCGCGG	1 cut(s)	169
SaqAI	TTAA	3 cut(s)	158, 336, 657
SatI	GCNGC	3 cut(s)	166, 266, 992
Sau3AI	GATC	5 cut(s)	31, 481, 550, 610, 739
Sau96I	GGNCC	3 cut(s)	187, 390, 710
ScaI	AGTACT	1 cut(s)	776
SfaNI	GCATC	3 cut(s)	535, 658, 796
SfcI	CTRYAG	3 cut(s)	516, 614, 645
Sfr303I	CCGCGG	1 cut(s)	169
SgrBI	CCGCGG	1 cut(s)	169
SinI	GGWCC	2 cut(s)	390, 710
SmiMI	CAYNNNNRTG	3 cut(s)	219, 309, 324
SmlI	CTYRAG	1 cut(s)	473
SmoI	CTYRAG	1 cut(s)	473
Sse9I	AATT	7 cut(s)	86, 160, 357, 663, 801, 810, 903
SseBI	AGGCCT	1 cut(s)	944
SsiI	CCGC	6 cut(s)	62, 166, 168, 788, 889, 992
SspMI	CTAG	2 cut(s)	81, 933
StuI	AGGCCT	1 cut(s)	944
TaaI	ACNGT	3 cut(s)	390, 848, 856
TaiI	ACGT	1 cut(s)	433
TaqI	TCGA	2 cut(s)	30, 501
TasI	AATT	7 cut(s)	86, 160, 357, 663, 801, 810, 903
TatI	WGTACW	2 cut(s)	246, 774
TauI	GCSGC	2 cut(s)	168, 994
TfiI	GAWTC	3 cut(s)	201, 719, 878
Tru1I	TTAA	3 cut(s)	158, 336, 657
Tru9I	TTAA	3 cut(s)	158, 336, 657
TscAI	CASTG	4 cut(s)	25, 256, 430, 904
TseI	GCWGC	1 cut(s)	265
TspDTI	ATGAA	7 cut(s)	123, 321, 399, 411, 588, 596, 797
TspRI	CASTG	4 cut(s)	25, 256, 430, 904
VpaK11BI	GGWCC	2 cut(s)	390, 710
XceI	RCATGY	5 cut(s)	72, 179, 263, 689, 696
XcmI	CCANNNNNNNNNTGG	1 cut(s)	594
XmiI	GTMKAC	1 cut(s)	644
XmnI	GAANNNNTTC	1 cut(s)	579
XspI	CTAG	2 cut(s)	81, 933
ZraI	GACGTC	1 cut(s)	431
ZrmI	AGTACT	1 cut(s)	776

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.