FvH4_1g23540

Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template-dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
15389121 .. 15389873
753 bp
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UTR
Exon/CDS
Intron
FvH4_1g23540.t1

Sequence Viewer

Length: 318 bp
ATGAGTTCGAATTCCTCCAAATTGTCTGGTTCAAAATCAAAGCGAAGCTTCAATTCCAACAATTCCAGCAACAAGAAGACGAAGATTAGCACCAATCAGAAAAACCTCTCCTCGTCTCGCTCCTCCTTCCAGAGATCCCCATTTCCCGATTTCAGAAGTTACATGGTGGAGAAGAACCGGAAACTTCAGAATCAGTTTGATACTGAAGCATCGAGTTCTTTGAGTTCCGAGAAGAGTGTTTTTCGTGGGGTTTCGATTTTTGTAGATGGTTTCACAGTGCCTTCTAGTCAGGTTTTTTTTAGTTTTTTCAATGTCTGA

Protein Analysis

106

Amino Acids

11.78

Weight (kDa)

10.6

Isoelectric Point (pI)

70.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 129
AcsI RAATTY 1 cut(s) 10
AcuI CTGAAG 2 cut(s) 170, 225
AgsI TTSAA 3 cut(s) 33, 52, 310
AluBI AGCT 1 cut(s) 48
AluI AGCT 1 cut(s) 48
Alw26I GTCTC 1 cut(s) 120
AlwI GGATC 1 cut(s) 129
ApoI RAATTY 1 cut(s) 10
AsuII TTCGAA 1 cut(s) 8
BbsI GAAGAC 1 cut(s) 83
BccI CCATC 1 cut(s) 260
BcoDI GTCTC 1 cut(s) 120
BfaI CTAG 1 cut(s) 285
BmsI GCATC 1 cut(s) 218
BpiI GAAGAC 1 cut(s) 83
Bpu14I TTCGAA 1 cut(s) 8
BsaWI WCCGGW 1 cut(s) 177
BseRI GAGGAG 2 cut(s) 100, 112
BsiSI CCGG 1 cut(s) 178
BsmAI GTCTC 1 cut(s) 120
BsmBI CGTCTC 1 cut(s) 120
Bsp119I TTCGAA 1 cut(s) 8
Bsp143I GATC 1 cut(s) 134
BspPI GGATC 1 cut(s) 129
BspT104I TTCGAA 1 cut(s) 8
BssMI GATC 1 cut(s) 134
Bst4CI ACNGT 1 cut(s) 277
Bst6I CTCTTC 1 cut(s) 227
BstBI TTCGAA 1 cut(s) 8
BstKTI GATC 1 cut(s) 137
BstMAI GTCTC 1 cut(s) 120
BstMBI GATC 1 cut(s) 134
BstV2I GAAGAC 1 cut(s) 83
BstX2I RGATCY 1 cut(s) 134
BstYI RGATCY 1 cut(s) 134
BtsIMutI CAGTG 1 cut(s) 282
CviAII CATG 1 cut(s) 163
CviJI RGCY 1 cut(s) 48
CviKI_1 RGCY 1 cut(s) 48
DpnI GATC 1 cut(s) 136
DpnII GATC 1 cut(s) 134
Eam1104I CTCTTC 1 cut(s) 227
EarI CTCTTC 1 cut(s) 227
Eco57I CTGAAG 2 cut(s) 170, 225
EcoRI GAATTC 1 cut(s) 10
Esp3I CGTCTC 1 cut(s) 120
FaeI CATG 1 cut(s) 166
FaiI YATR 1 cut(s) 164
FalI AAGNNNNNCTT 2 cut(s) 32, 64
FatI CATG 1 cut(s) 162
FspBI CTAG 1 cut(s) 285
HapII CCGG 1 cut(s) 178
Hin1II CATG 1 cut(s) 166
HindIII AAGCTT 1 cut(s) 46
HinfI GANTC 1 cut(s) 190
HpaII CCGG 1 cut(s) 178
Hpy188I TCNGA 5 cut(s) 99, 155, 189, 229, 317
Hpy188III TCNNGA 2 cut(s) 130, 146
HpyAV CCTTC 2 cut(s) 136, 291
HpyCH4III ACNGT 1 cut(s) 277
Hsp92II CATG 1 cut(s) 166
Kzo9I GATC 1 cut(s) 134
LmnI GCTCC 1 cut(s) 125
LpnPI CCDG 5 cut(s) 12, 79, 143, 191, 275
LweI GCATC 1 cut(s) 218
MaeI CTAG 1 cut(s) 285
MaeIII GTNAC 1 cut(s) 158
MalI GATC 1 cut(s) 136
MboI GATC 1 cut(s) 134
MboII GAAGA 4 cut(s) 88, 94, 184, 244
MflI RGATCY 1 cut(s) 134
MluCI AATT 4 cut(s) 10, 20, 52, 61
MmeI TCCRAC 1 cut(s) 81
MnlI CCTC 4 cut(s) 25, 116, 121, 133
MspI CCGG 1 cut(s) 178
NdeII GATC 1 cut(s) 134
NlaIII CATG 1 cut(s) 166
NspV TTCGAA 1 cut(s) 8
PfeI GAWTC 1 cut(s) 190
PsuI RGATCY 1 cut(s) 134
Sau3AI GATC 1 cut(s) 134
SetI ASST 3 cut(s) 50, 108, 294
SfaNI GCATC 1 cut(s) 218
SfuI TTCGAA 1 cut(s) 8
Sse9I AATT 4 cut(s) 10, 20, 52, 61
SspMI CTAG 1 cut(s) 285
TaaI ACNGT 1 cut(s) 277
TaqI TCGA 3 cut(s) 8, 212, 254
TasI AATT 4 cut(s) 10, 20, 52, 61
TfiI GAWTC 1 cut(s) 190
TscAI CASTG 1 cut(s) 282
TspRI CASTG 1 cut(s) 282
XapI RAATTY 1 cut(s) 10
XspI CTAG 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.