Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0004782

Physical Location & Seq

Genomic Coordinates Forward (+)

6244607 .. 6255412

Gene Structure 10806 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG063200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3360 bp

ATGAGTTTGAATTCGTCAAAATCGTCTGGTTCAAAATCGAAGCGAAGCTTCAATTCCAACAATTCCAGTAACAACAAGAAGAAGAAGACGAAGATTAGCACCAATCAGAAAACCCTAGGCGGCGTCTCTTGGGGCGCCAATTCAATCTCTTCCTCTCGCTCCTCCTTCCAAAGATCCCCCTTTCCCGATTTCGGCAGTTATATGGTAGAGAAGAACAGGAAACTTCAGAATCAGTTTGATAGTGAAGCTTCGAGTTGTTCGGGGTCCGAGAGGAGTATTTTTCGTGGGGTTTCGATTTTCGTAGATGGTTTCACAGTGCCTTCTAGTCAGGAACTGAAAGCGTACATGGTGAATTATGGTGGGAGATATGAGAATTACTTTTCAAGGCGTCGTGTTACACATATCATCTGCAGTAATCTTCCTGACAGTAAAATAAAAAATCTGAGGTCTTTCAGTGGAGGGCTCCCAGTTGTGAAGCCTAACTGGATTGTGGATTCAGTTGCTGCTAACAAACTCTTGAGTTGGGTTCCTTACCAACTTGAACAGGTTGCTTGTAACCAACCAAGGTTGTCAGCCTTCTTTGCTCCGAAGATAATCCCCGACTCTGATGATGCTCTGAGAGATACATCTGATCAAGTAAAACCTGAAAGTGAGGATACGTCTTCTGTAGGAACCAGATTAGAAGATGATAACAAGTCAGTATGCAAATCCACTGAACATGGACAGGAAAGTAGCGGAGAATATGATGATATGATATATGAAAACACCAATGGACAATTTGGTGAGGAGTTGTATACAGGTGAAAAATATTCTGAAGTTAAACTAGAAGAAACGCCTACTTCAGATGCAGAAGATAATGTCAATATAAAGGATGAACTTAAATCTAGTACCCACCAGCACTCTGCTTCAGTTAGCAGTAACTGCTTACCAAGCTCAGAAAATATTGGGTCTAATCGAAGTCATTCAACTCTTGGGGATCCCAATTTTGTGGAAAATTATTTTAAGAGCTCAAGGCTGCACTTTATAGGAACCTGGAGAAATCGGTATCGCAAGCGTTTTCCTAGTTCGTCTAAAGGGTTGGACAACACAGAATCTAACCGTTGTGCTCCTGATAGTTCTCCGAAGACTCCCATTATACATATTGACATGGACTGTTTTTTTGTGTCCGTGGTCATCAGGCAACGCCCTGAACTTAAGGATAGGCCTGTAGCTGTATGCCATTCTGATAATCCAAAGGGCACTGCTGAAATTTCATCTGCAAACTACCCTGCTCGAGATTATGGAGTGAGGGCTGGGATGTTTGTCAGAGATGCTAAGGCTCTTTGCCCACACCTTGTCATTCTTCCTTATGATTTTGAAGCGTATGAGGAGGTAGCTGATCAGTTCTACGACATTCTGCATAAGCACTGCAGAAAAGTACAAGCAGTAAGCTGTGACGAAGCATTCTTAGATGTCACATACTTGGAAGGGGTAGATACGGATATGTTAGCCTCAACTGTAAGACAAGAGATTTTTGAGACTACTGGATGCACTGCAAGTGCTGGCATAGCTAGAAATATGCTCATGGCTCGCCTTGCAACAAGAACTGCTAAACCAGATGGTCAATGCAACATTCCTCCCGAAAGGGTGGATGATTATTTATATGAACTTCCCATCAAGACGCTTCCAGGAATAGGACACGTTTTAGAGGAGAAGTTGAAGAAGCGAAATGTTTTGACGTGTGGACAGTTGCGTATGATTCCTAAGGACTCTCTTCAAAAGGACTTCGGAACAAAAACTGGGGAGATGTTGTGGAATCATAGTAGAGGCATAGATAATCGGCTAGTTGGGGTGATTCAGGAAAGCAAGTCTATTGGTGCTGAAGTGAATTGGGGTGTGAGATTCAAGGATTTGAAAGATAGTCATCACTTCCTTTCAAATCTTTGCAAGGAGGTTTCCTTACGCTTGCAAGGATGCGCAGTGCAGGGCCGTACTTTTTCCCTTAAGATTAAGAAAAGAAGAAAAGATGCACAGGAGCCAGTGAAGTATATGGGATGTGGAGACTGTGAAAACTTGAGCCACTCTGTAACGGTTCCAGTTGCTACTGATGATGTGGAAGTGCTTCAGAGAATAACAAAGCAGCTCTTTGGGTTTTTCTCCCTAGATGTCAAGGAGATTCGAGGTATTGGTTTGCAAGTTTCCAAGCTTGAGAGTGTAGATGCTTCAAAGCAAGGACTTGGAAAAAACTCTTTGAAATCGTGGTTCCAATCTGCCAAAGCAAGTACAGAAGAAAAATCCAATATTTATTCTGTAGATGATGGGGAGAGGGTGGATGCAGATTCTGAGGGTCGGGGAACTCATCGAACTTCAGGCCAGCTATGTGAAAATTTACTTGGTATTCAAACTCCAGTGGACAATCATCGGTCTAGTGGTGAAACTTCTGCAAACCAGGTTTCAGCACCACCACCTTTATGTCATCTTGATTTAGGAGTTATTGAAAGTCTTCCTCCAGAACTTTTTGCGGAATTAAACGGGATCTATGGTGGCAAGTTGGTTGATTTTGTTGCTAAAAGTAAACGAGAATTCAGTTTAACAACATCACACGAACGAGTAGATGATGCAAAGAACGGGAGTGAGAGACATCTCTTAAATGATATGCGCCTGCGGGATGAAATTGTACTAGAACCCAGGCACACAGTTGTAGAAAAACAAGCAATGCCTTCTTCTGTGGGAGGGTCCTGTGATGTGGCAGTTTCAACGTCAGAGCTTGGAAATACTGATATAATGCCTGCATCTTTAAGTCAAGTAGATCCCTCGGTGTTGCAACAATTACCTCAAGAACTGAGAGTTGACTTACTTGAGCAGCTTCCTGCACACAGGAGATCTGACTTAGCTTCAAGTGCTGCCTTGGACCCTCTTGCAGAGATACATGGAGAATCAATAGGTATGAGGGTTGGAAATCATTCTGGATCACATGATCTTGCATTTAACAACAAGCTTTGGATTGGAAATCCTCCACGGTGGGTTGAAGAGTTCAAAGCCAGCAAATGCATGATATTAAATATTCTTGCAGAGATGTATGACAAATCAGGGTCAAGTGGAAACTTATCTGTAATTCTGCGCAGTACTATCATGGAATGTCAAGATCCTCTGGATTCAAGTTCTGACTGTTGGGTTCAAGCTGTATACAGCTTCTCTGAGCTTCTCAGGCAGTATGTTACATTAAAGATTGACTCAGATATTGAAGAGATATATGTTTGTTTTCGGCTTCTTAAAAGGTTTACAATGAAGTCAAAGTTTTTCTTACAGGTATACAGCGATGTCTTTCCTTACCTTCAGGCATCTTTCACTGATAGCTATGGAGGAAACTTGCACATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000002 GO:0000731 GO:0002200 GO:0002206 GO:0002376 GO:0002377 GO:0002440 GO:0002520 GO:0002565 GO:0003674 GO:0003824 GO:0003887 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010224 GO:0016043 GO:0016444 GO:0016445 GO:0016740 GO:0016772 GO:0016779 GO:0017125 GO:0018130 GO:0019438 GO:0019985 GO:0031974 GO:0031981 GO:0032042 GO:0032501 GO:0032502 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0035822 GO:0035861 GO:0042276 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043504 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0070013 GO:0070987 GO:0071704 GO:0071840 GO:0071897 GO:0090304 GO:0090734 GO:0140097 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

BRCT_2 IMS IMS_C IMS_HHH LIG3_BRCT

Protein Analysis

1119

Amino Acids

124.59

Weight (kDa)

6.14

Isoelectric Point (pI)

49.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BRCT	PF00533	91 - 166	1.1e-09	BRCA1 C Terminus (BRCT) domain
BRCT_2	PF16589	93 - 178	1.9e-07	BRCT domain
LIG3_BRCT	PF16759	93 - 169	2.3e-06	DNA ligase 3 BRCT domain
IMS	PF00817	381 - 528	7.7e-46	impB/mucB/samB family
IMS_HHH	PF11798	540 - 571	1.3e-06	IMS family HHH motif
IMS_HHH_1	PF21999	554 - 605	1.1e-19	DNA polymerase-iota, thumb domain
IMS_C	PF11799	615 - 736	7.8e-18	impB/mucB/samB family C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0004782)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44750 AT5G44750
fragaria_vesca	FvH4_1g23540 FvH4_2g04972
malus_domestica	MD05G1091100.v1.1 MD10G1098400.v1.1
prunus_persica	Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1
pyrus_communis	pycom10g08430
rosa_chinensis	RchiOBHm_Chr6g0254741
rosa_laevigata	RLG00000014893
rosa_multiflora	Rmu_sc0007716.1_g000003
rosa_roxburghii	Rroxscaffold_7G00210560
rosa_rugosa	Rorug05G0554600
rosa_samantha	Rh6AG071600 Rh6BG063800 Rh6CG063200 Rh6DG060300
rosa_wichuraiana	Rw6G006270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	1957, 3101
AccB1I	GGYRCC	1 cut(s)	134
AccI	GTMKAC	3 cut(s)	794, 3165, 3291
AciI	CCGC	4 cut(s)	120, 735, 2501, 2644
AclWI	GGATC	7 cut(s)	168, 971, 984, 2522, 2783, 2956, 3119
AcsI	RAATTY	4 cut(s)	10, 1248, 2365, 2561
AcuI	CTGAAG	8 cut(s)	209, 825, 834, 891, 1881, 2087, 2331, 3299
AcyI	GRCGYC	3 cut(s)	123, 135, 388
AfaI	GTAC	7 cut(s)	344, 889, 1419, 1972, 2263, 2658, 3106
AfiI	CCNNNNNNNGG	2 cut(s)	191, 1673
AflII	CTTAAG	2 cut(s)	1193, 1982
AflIII	ACRYGT	2 cut(s)	1678, 1718
AjiI	CACGTC	1 cut(s)	1719
AjnI	CCWGG	4 cut(s)	1031, 1666, 2427, 2666
AjuI	GAANNNNNNNTTGG	2 cut(s)	2355, 2387
Alw21I	GWGCWC	2 cut(s)	1010, 1108
Alw26I	GTCTC	4 cut(s)	130, 1511, 2034, 2611
AlwI	GGATC	7 cut(s)	168, 971, 984, 2522, 2783, 2956, 3119
AlwNI	CAGNNNCTG	4 cut(s)	334, 503, 921, 2321
Ama87I	CYCGRG	1 cut(s)	1272
AoxI	GGCC	3 cut(s)	1202, 1966, 2350
ApeKI	GCWGC	5 cut(s)	503, 1015, 2119, 2842, 2882
ApoI	RAATTY	4 cut(s)	10, 1248, 2365, 2561
ArsI	GACNNNNNNTTYG	2 cut(s)	1142, 1174
Asp700I	GAANNNNTTC	4 cut(s)	961, 2100, 2481, 2941
AspA2I	CCTAGG	1 cut(s)	115
AspLEI	GCGC	4 cut(s)	137, 1958, 2640, 3102
AspS9I	GGNCC	4 cut(s)	264, 1966, 2715, 2890
AsuHPI	GGTGA	5 cut(s)	361, 794, 812, 1843, 2423
AvaI	CYCGRG	1 cut(s)	1272
AvaII	GGWCC	3 cut(s)	264, 2715, 2890
AvrII	CCTAGG	1 cut(s)	115
AxyI	CCTNAGG	1 cut(s)	1743
BaeGI	GKGCMC	1 cut(s)	1241
BamHI	GGATCC	1 cut(s)	976
BanI	GGYRCC	1 cut(s)	134
BanII	GRGCYC	2 cut(s)	465, 1010
BbsI	GAAGAC	4 cut(s)	92, 654, 1130, 2474
Bbv12I	GWGCWC	2 cut(s)	1010, 1108
BbvI	GCAGC	5 cut(s)	490, 1002, 2131, 2854, 2869
BccI	CCATC	4 cut(s)	299, 1592, 1661, 2291
BceAI	ACGGC	1 cut(s)	1953
BciT130I	CCWGG	4 cut(s)	1033, 1668, 2429, 2668
BciVI	GTATCC	1 cut(s)	649
BclI	TGATCA	2 cut(s)	631, 1378
BcoDI	GTCTC	4 cut(s)	130, 1511, 2034, 2611
BfmI	CTRYAG	5 cut(s)	409, 666, 1206, 1408, 2289
BfoI	RGCGCY	1 cut(s)	138
BfrI	CTTAAG	2 cut(s)	1193, 1982
BfuI	GTATCC	1 cut(s)	649
BglII	AGATCT	1 cut(s)	2861
BisI	GCNGC	6 cut(s)	121, 504, 1016, 2120, 2843, 2883
BlnI	CCTAGG	1 cut(s)	115
BlsI	GCNGC	6 cut(s)	122, 505, 1017, 2121, 2844, 2884
BmcAI	AGTACT	1 cut(s)	3106
Bme1390I	CCNGG	4 cut(s)	1033, 1668, 2429, 2668
Bme18I	GGWCC	3 cut(s)	264, 2715, 2890
BmeT110I	CYCGRG	1 cut(s)	1272
BmgBI	CACGTC	1 cut(s)	1719
BmgT120I	GGNCC	4 cut(s)	264, 1966, 2715, 2890
BmrFI	CCNGG	4 cut(s)	1033, 1668, 2429, 2668
BmrI	ACTGGG	2 cut(s)	461, 1788
BmuI	ACTGGG	2 cut(s)	461, 1788
BpiI	GAAGAC	4 cut(s)	92, 654, 1130, 2474
BpmI	CTGGAG	3 cut(s)	1054, 2370, 2472
Bpu10I	CCTNAGC	1 cut(s)	1314
BpuEI	CTTGAG	6 cut(s)	538, 994, 2074, 2207, 2799, 2858
BsaBI	GATNNNNATC	1 cut(s)	1902
BsaHI	GRCGYC	3 cut(s)	123, 135, 388
BsaJI	CCNNGG	7 cut(s)	115, 563, 1167, 2666, 2793, 2886, 2996
BsaXI	ACNNNNNCTCC	2 cut(s)	1775, 1805
Bsc4I	CCNNNNNNNGG	2 cut(s)	191, 1673
Bse1I	ACTGG	8 cut(s)	66, 467, 488, 1528, 1783, 2018, 2075, 2387
Bse21I	CCTNAGG	1 cut(s)	1743
Bse3DI	GCAATG	1 cut(s)	2700
Bse8I	GATNNNNATC	1 cut(s)	1902
BseBI	CCWGG	4 cut(s)	1033, 1668, 2429, 2668
BseDI	CCNNGG	7 cut(s)	115, 563, 1167, 2666, 2793, 2886, 2996
BseGI	GGATG	8 cut(s)	877, 1302, 1532, 1636, 1958, 2039, 2317, 2653
BseJI	GATNNNNATC	1 cut(s)	1902
BseLI	CCNNNNNNNGG	2 cut(s)	191, 1673
BseMI	GCAATG	1 cut(s)	2700
BseMII	CTCAG	8 cut(s)	434, 608, 948, 2313, 2813, 3168, 3199, 3228
BseNI	ACTGG	8 cut(s)	66, 467, 488, 1528, 1783, 2018, 2075, 2387
BseRI	GAGGAG	5 cut(s)	151, 286, 800, 1382, 1703
BseSI	GKGCMC	1 cut(s)	1241
BseXI	GCAGC	5 cut(s)	490, 1002, 2131, 2854, 2869
BseYI	CCCAGC	1 cut(s)	1292
BsgI	GTGCAG	3 cut(s)	1001, 1982, 2835
BshFI	GGCC	3 cut(s)	1204, 1968, 2352
BshNI	GGYRCC	1 cut(s)	134
BsiHKAI	GWGCWC	2 cut(s)	1010, 1108
BsiHKCI	CYCGRG	1 cut(s)	1272
BslI	CCNNNNNNNGG	2 cut(s)	191, 1673
BsmAI	GTCTC	4 cut(s)	130, 1511, 2034, 2611
BsmBI	CGTCTC	1 cut(s)	130
BsmI	GAATGC	1 cut(s)	1442
BsnI	GGCC	3 cut(s)	1204, 1968, 2352
BsoBI	CYCGRG	1 cut(s)	1272
Bsp1286I	GDGCHC	4 cut(s)	465, 1010, 1108, 1241
BspACI	CCGC	4 cut(s)	120, 735, 2501, 2644
BspANI	GGCC	3 cut(s)	1204, 1968, 2352
BspCNI	CTCAG	8 cut(s)	435, 609, 947, 2314, 2814, 3169, 3198, 3227
BspMAI	CTGCAG	2 cut(s)	413, 1412
BspPI	GGATC	7 cut(s)	168, 971, 984, 2522, 2783, 2956, 3119
BspT107I	GGYRCC	1 cut(s)	134
BspTI	CTTAAG	2 cut(s)	1193, 1982
BsrDI	GCAATG	1 cut(s)	2700
BsrI	ACTGG	8 cut(s)	66, 467, 488, 1528, 1783, 2018, 2075, 2387
BssECI	CCNNGG	7 cut(s)	115, 563, 1167, 2666, 2793, 2886, 2996
BssNAI	GTATAC	3 cut(s)	795, 3166, 3292
BssNI	GRCGYC	3 cut(s)	123, 135, 388
BssT1I	CCWWGG	3 cut(s)	115, 563, 2886
Bst1107I	GTATAC	3 cut(s)	795, 3166, 3292
Bst2UI	CCWGG	4 cut(s)	1033, 1668, 2429, 2668
Bst6I	CTCTTC	4 cut(s)	154, 1758, 3003, 3219
BstACI	GRCGYC	3 cut(s)	123, 135, 388
BstAFI	CTTAAG	2 cut(s)	1193, 1982
BstAPI	GCANNNNNTGC	1 cut(s)	921
BstC8I	GCNNGC	8 cut(s)	1052, 1543, 1570, 1946, 2354, 2642, 2769, 3022
BstDSI	CCRYGG	2 cut(s)	1167, 2996
BstF5I	GGATG	8 cut(s)	877, 1302, 1532, 1636, 1958, 2039, 2317, 2653
BstH2I	RGCGCY	1 cut(s)	138
BstHHI	GCGC	4 cut(s)	137, 1958, 2640, 3102
BstMAI	GTCTC	4 cut(s)	130, 1511, 2034, 2611
BstMWI	GCNNNNNNNGC	7 cut(s)	581, 921, 930, 1547, 1574, 2879, 3187
BstNI	CCWGG	4 cut(s)	1033, 1668, 2429, 2668
BstSCI	CCNGG	4 cut(s)	1031, 1666, 2427, 2666
BstSFI	CTRYAG	5 cut(s)	409, 666, 1206, 1408, 2289
BstSLI	GKGCMC	1 cut(s)	1241
BstV1I	GCAGC	5 cut(s)	490, 1002, 2131, 2854, 2869
BstV2I	GAAGAC	4 cut(s)	92, 654, 1130, 2474
BstX2I	RGATCY	6 cut(s)	173, 976, 2514, 2788, 2861, 3124
BstXI	CCANNNNNNTGG	1 cut(s)	988
BstYI	RGATCY	6 cut(s)	173, 976, 2514, 2788, 2861, 3124
BstZ17I	GTATAC	3 cut(s)	795, 3166, 3292
Bsu36I	CCTNAGG	1 cut(s)	1743
BsuI	GTATCC	1 cut(s)	649
BsuRI	GGCC	3 cut(s)	1204, 1968, 2352
BtgI	CCRYGG	2 cut(s)	1167, 2996
BtgZI	GCGATG	1 cut(s)	3312
BtrI	CACGTC	1 cut(s)	1719
BtsCI	GGATG	8 cut(s)	877, 1302, 1532, 1636, 1958, 2039, 2317, 2653
BtsI	GCAGTG	4 cut(s)	1239, 1405, 1530, 1965
Cac8I	GCNNGC	8 cut(s)	1052, 1543, 1570, 1946, 2354, 2642, 2769, 3022
CaiI	CAGNNNCTG	4 cut(s)	334, 503, 921, 2321
CfoI	GCGC	4 cut(s)	137, 1958, 2640, 3102
Cfr13I	GGNCC	4 cut(s)	264, 1966, 2715, 2890
CseI	GACGC	3 cut(s)	112, 377, 1669
CsiI	ACCWGGT	1 cut(s)	2427
Csp6I	GTAC	7 cut(s)	343, 888, 1418, 1971, 2262, 2657, 3105
CviAII	CATG	8 cut(s)	346, 719, 1147, 1564, 2909, 2954, 3031, 3112
CviQI	GTAC	7 cut(s)	343, 888, 1418, 1971, 2262, 2657, 3105
DinI	GGCGCC	1 cut(s)	136
Eam1104I	CTCTTC	4 cut(s)	154, 1758, 3003, 3219
EarI	CTCTTC	4 cut(s)	154, 1758, 3003, 3219
Ecl136II	GAGCTC	1 cut(s)	1008
Eco130I	CCWWGG	3 cut(s)	115, 563, 2886
Eco147I	AGGCCT	1 cut(s)	1204
Eco24I	GRGCYC	2 cut(s)	465, 1010
Eco47I	GGWCC	3 cut(s)	264, 2715, 2890
Eco53kI	GAGCTC	1 cut(s)	1008
Eco57I	CTGAAG	8 cut(s)	209, 825, 834, 891, 1881, 2087, 2331, 3299
Eco81I	CCTNAGG	1 cut(s)	1743
Eco88I	CYCGRG	1 cut(s)	1272
EcoICRI	GAGCTC	1 cut(s)	1008
EcoO109I	RGGNCCY	1 cut(s)	2715
EcoRI	GAATTC	2 cut(s)	10, 2561
EcoRII	CCWGG	4 cut(s)	1031, 1666, 2427, 2666
EcoT14I	CCWWGG	3 cut(s)	115, 563, 2886
EcoT22I	ATGCAT	1 cut(s)	3032
EcoT38I	GRGCYC	2 cut(s)	465, 1010
EgeI	GGCGCC	1 cut(s)	136
EheI	GGCGCC	1 cut(s)	136
ErhI	CCWWGG	3 cut(s)	115, 563, 2886
Esp3I	CGTCTC	1 cut(s)	130
FaeI	CATG	8 cut(s)	349, 722, 1150, 1567, 2912, 2957, 3034, 3115
FalI	AAGNNNNNCTT	6 cut(s)	32, 64, 2108, 2140, 3266, 3298
FatI	CATG	8 cut(s)	345, 718, 1146, 1563, 2908, 2953, 3030, 3111
FauI	CCCGC	1 cut(s)	2637
FbaI	TGATCA	2 cut(s)	631, 1378
FblI	GTMKAC	3 cut(s)	794, 3165, 3291
Fnu4HI	GCNGC	6 cut(s)	121, 504, 1016, 2120, 2843, 2883
FokI	GGATG	8 cut(s)	884, 1309, 1539, 1643, 1965, 2046, 2324, 2660
FriOI	GRGCYC	2 cut(s)	465, 1010
Fsp4HI	GCNGC	6 cut(s)	121, 504, 1016, 2120, 2843, 2883
FspI	TGCGCA	2 cut(s)	1957, 3101
GlaI	GCGC	4 cut(s)	136, 1957, 2639, 3101
GluI	GCNGC	6 cut(s)	121, 504, 1016, 2120, 2843, 2883
GsaI	CCCAGC	1 cut(s)	1296
GsuI	CTGGAG	3 cut(s)	1054, 2370, 2472
HaeII	RGCGCY	1 cut(s)	138
HaeIII	GGCC	3 cut(s)	1204, 1968, 2352
HgaI	GACGC	3 cut(s)	112, 377, 1669
HhaI	GCGC	4 cut(s)	137, 1958, 2640, 3102
Hin1I	GRCGYC	3 cut(s)	123, 135, 388
Hin1II	CATG	8 cut(s)	349, 722, 1150, 1567, 2912, 2957, 3034, 3115
Hin6I	GCGC	4 cut(s)	135, 1956, 2638, 3100
HinP1I	GCGC	4 cut(s)	135, 1956, 2638, 3100
HincII	GTYRAC	1 cut(s)	2830
HindII	GTYRAC	1 cut(s)	2830
HindIII	AAGCTT	4 cut(s)	46, 246, 2183, 2975
HphI	GGTGA	5 cut(s)	361, 794, 812, 1843, 2423
Hpy166II	GTNNAC	8 cut(s)	795, 1724, 2392, 2555, 2830, 3166, 3261, 3292
Hpy8I	GTNNAC	8 cut(s)	795, 1724, 2392, 2555, 2830, 3166, 3261, 3292
Hpy99I	CGWCG	1 cut(s)	393
HpyAV	CCTTC	6 cut(s)	175, 330, 586, 1460, 2709, 3323
HpyCH4IV	ACGT	4 cut(s)	659, 1680, 1718, 2738
HpyF10VI	GCNNNNNNNGC	7 cut(s)	581, 921, 930, 1547, 1574, 2879, 3187
HpySE526I	ACGT	4 cut(s)	659, 1680, 1718, 2738
Hsp92I	GRCGYC	3 cut(s)	123, 135, 388
Hsp92II	CATG	8 cut(s)	349, 722, 1150, 1567, 2912, 2957, 3034, 3115
HspAI	GCGC	4 cut(s)	135, 1956, 2638, 3100
KasI	GGCGCC	1 cut(s)	134
Ksp22I	TGATCA	2 cut(s)	631, 1378
LmnI	GCTCC	5 cut(s)	164, 468, 589, 1111, 2014
Lsp1109I	GCAGC	5 cut(s)	490, 1002, 2131, 2854, 2869
MabI	ACCWGGT	1 cut(s)	2427
MaeII	ACGT	4 cut(s)	659, 1680, 1718, 2738
MaeIII	GTNAC	8 cut(s)	68, 394, 554, 917, 1433, 1453, 2065, 3196
MflI	RGATCY	6 cut(s)	173, 976, 2514, 2788, 2861, 3124
MhlI	GDGCHC	4 cut(s)	465, 1010, 1108, 1241
Mly113I	GGCGCC	1 cut(s)	135
MlyI	GAGTC	4 cut(s)	596, 1120, 1742, 3206
MmeI	TCCRAC	3 cut(s)	81, 1059, 2914
Mph1103I	ATGCAT	1 cut(s)	3032
MroXI	GAANNNNTTC	4 cut(s)	961, 2100, 2481, 2941
MslI	CAYNNNNRTG	1 cut(s)	2449
MspCI	CTTAAG	2 cut(s)	1193, 1982
MspR9I	CCNGG	4 cut(s)	1033, 1668, 2429, 2668
Mva1269I	GAATGC	1 cut(s)	1442
MvaI	CCWGG	4 cut(s)	1033, 1668, 2429, 2668
MwoI	GCNNNNNNNGC	7 cut(s)	581, 921, 930, 1547, 1574, 2879, 3187
NarI	GGCGCC	1 cut(s)	135
NlaIII	CATG	8 cut(s)	349, 722, 1150, 1567, 2912, 2957, 3034, 3115
NmuCI	GTSAC	2 cut(s)	1433, 1453
NsbI	TGCGCA	2 cut(s)	1957, 3101
NsiI	ATGCAT	1 cut(s)	3032
PaeR7I	CTCGAG	1 cut(s)	1272
PceI	AGGCCT	1 cut(s)	1204
PcsI	WCGNNNNNNNCGW	1 cut(s)	20
PctI	GAATGC	1 cut(s)	1442
PdmI	GAANNNNTTC	4 cut(s)	961, 2100, 2481, 2941
PfoI	TCCNGGA	1 cut(s)	1666
PkrI	GCNGC	6 cut(s)	122, 505, 1017, 2121, 2844, 2884
PleI	GAGTC	4 cut(s)	596, 1120, 1742, 3206
PluTI	GGCGCC	1 cut(s)	138
PpsI	GAGTC	4 cut(s)	596, 1120, 1742, 3206
PpuMI	RGGWCCY	1 cut(s)	2715
Psp124BI	GAGCTC	1 cut(s)	1010
Psp5II	RGGWCCY	1 cut(s)	2715
Psp6I	CCWGG	4 cut(s)	1031, 1666, 2427, 2666
PspFI	CCCAGC	1 cut(s)	1292
PspGI	CCWGG	4 cut(s)	1031, 1666, 2427, 2666
PspPI	GGNCC	4 cut(s)	264, 1966, 2715, 2890
PspPPI	RGGWCCY	1 cut(s)	2715
PstI	CTGCAG	2 cut(s)	413, 1412
PstNI	CAGNNNCTG	4 cut(s)	334, 503, 921, 2321
PsuI	RGATCY	6 cut(s)	173, 976, 2514, 2788, 2861, 3124
RsaI	GTAC	7 cut(s)	344, 889, 1419, 1972, 2263, 2658, 3106
RsaNI	GTAC	7 cut(s)	343, 888, 1418, 1971, 2262, 2657, 3105
RseI	CAYNNNNRTG	1 cut(s)	2449
SacI	GAGCTC	1 cut(s)	1010
SatI	GCNGC	6 cut(s)	121, 504, 1016, 2120, 2843, 2883
Sau96I	GGNCC	4 cut(s)	264, 1966, 2715, 2890
ScaI	AGTACT	1 cut(s)	3106
SchI	GAGTC	4 cut(s)	596, 1120, 1742, 3206
ScrFI	CCNGG	4 cut(s)	1033, 1668, 2429, 2668
SduI	GDGCHC	4 cut(s)	465, 1010, 1108, 1241
SexAI	ACCWGGT	1 cut(s)	2427
SfcI	CTRYAG	5 cut(s)	409, 666, 1206, 1408, 2289
SfoI	GGCGCC	1 cut(s)	136
Sfr274I	CTCGAG	1 cut(s)	1272
SinI	GGWCC	3 cut(s)	264, 2715, 2890
SlaI	CTCGAG	1 cut(s)	1272
SmiMI	CAYNNNNRTG	1 cut(s)	2449
SmlI	CTYRAG	9 cut(s)	517, 1009, 1193, 1272, 1982, 2053, 2186, 2814, 2837
SmoI	CTYRAG	9 cut(s)	517, 1009, 1193, 1272, 1982, 2053, 2186, 2814, 2837
SseBI	AGGCCT	1 cut(s)	1204
SsiI	CCGC	4 cut(s)	120, 735, 2501, 2644
SspDI	GGCGCC	1 cut(s)	134
SspI	AATATT	4 cut(s)	809, 943, 2281, 3043
SstI	GAGCTC	1 cut(s)	1010
StuI	AGGCCT	1 cut(s)	1204
StyD4I	CCNGG	4 cut(s)	1031, 1666, 2427, 2666
StyI	CCWWGG	3 cut(s)	115, 563, 2886
TaiI	ACGT	4 cut(s)	662, 1683, 1721, 2741
TaqI	TCGA	7 cut(s)	38, 251, 293, 955, 1273, 2158, 2341
TaqII	GACCGA	1 cut(s)	2391
TatI	WGTACW	4 cut(s)	1417, 2261, 2656, 3104
TauI	GCSGC	1 cut(s)	123
TseFI	GTSAC	2 cut(s)	1433, 1453
TseI	GCWGC	5 cut(s)	503, 1015, 2119, 2842, 2882
Tsp45I	GTSAC	2 cut(s)	1433, 1453
TspDTI	ATGAA	6 cut(s)	774, 888, 1242, 1659, 2664, 3281
TspGWI	ACGGA	2 cut(s)	1156, 1493
Vha464I	CTTAAG	2 cut(s)	1193, 1982
VpaK11BI	GGWCC	3 cut(s)	264, 2715, 2890
XapI	RAATTY	4 cut(s)	10, 1248, 2365, 2561
XhoI	CTCGAG	1 cut(s)	1272
XmaJI	CCTAGG	1 cut(s)	115
XmiI	GTMKAC	3 cut(s)	794, 3165, 3291
XmnI	GAANNNNTTC	4 cut(s)	961, 2100, 2481, 2941
ZrmI	AGTACT	1 cut(s)	3106
Zsp2I	ATGCAT	1 cut(s)	3032

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.