Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0004782

Physical Location & Seq

Genomic Coordinates Forward (+)

4028267 .. 4038715

Gene Structure 10449 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g04972.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3348 bp

ATGAGTTCGAATTCCTCCAAATCGTCTGGTTCAAAATCAAAGCGAAGCTTCAATTCCAACAATTCCAGCAACAAGAAAACGAAGAGTAGCACCAATCAGAAAAACCTAGGCGTCTCTTGGGGCGCCAATTCTCTCTCCTCGTCTCGCTCCTCCTTCCAGGGATCCCCATTTCCCGATTTCGGAAGTTACATGGTGGAGAAGAACCGGAAACTTCAGAATCAGTTTGATACCGAAGCTTCGAGTTCTTTGAGTTCCGAGAAGAGTGTTTTTCGTGGGGTTTCGATTTTTGTAGATGGTTTCACGGTGCCTTCTAGTCAGGAACTGAGAGCCTACATGTTGAATTATGGTGGGAGATATGAGAATTACTTTTCGAGACGTCATGTTACACATATCATCTGCAGTAATCTGCCTGACAGTAAAATAAAAAATCTGAGGTCTTTCAGCGGAGGGCTCCCAGTTGTGAAGCCTAACTGGATTGTGGATTCAGTTGCGGCTAACAAACTCTTGAGTTGGGTTCCTTACCAACTTGAACAGGTTGCCTGTAACCAACCAAGGTTGTCAGCCTTCTTTTCTCCAAAGATAATTCCGGACTCTGATGATGATCTGAGAGATTCATATGATCAAGTAAAACCTGAAAGTGGGGATATGTCTTCAGTAGGACCCAGGTTAGAAGATTGTAACAAGTCAGTATGCAGATCCACTGAACATCGACTGGAAAGTAGTGGAGAATTTGATTATATGATATATGAAAACACCAATGAACAATTTGGGAAGGAGTCGTATACAGGTGAAAATGATTCTGAAATTAAACAAGAAGAATCGCCTACTTCAGATGCAGAAGATATTGTCAGTACAAAGGATGAACTTAAATCTAGTACCCACCAGCACTCTGCTTCAGTGAGCAGCAACTGCTTACCAAGCTCAGAAAATATTGGGTCTAGTCGAAGTCATTCAACTCTTGGGGATCCCAATTTTGTGGAAAATTATTTTAAGAGTTCCAGGCTGCACTTTATAGGAACCTGGAGAAATCGGTATCGCAAGCGTTTTCCTAGTTCGTCTAAAGGGTTGGACAACATAGATTCTAACCATTGTGCTCCTGATAGTTCTCCGAAAACTCCCATTATACATATTGACATGGACTGTTTTTTTGTGTCCGTGGTCATCAGACAATGCCCTGAACTTAAGGATAGACCTGTAGCTGTTTGTCATTCTGATAATCCAAAGGGCACTGCTGAAATTTCATCTGCAAACTATCCGGCTCGAGATTATGGAGTGAGGGCTGGGATGTTTGTCAGAGATGCTAAGGCTCGTTGTCCACACCTTGTCATTCTTCCTTATAATTTTGAAGCATATGAGGAGGTAGCTGATCAGTTCTATGACATTCTGCATAAGCACTGCAGAAAAGTACAAGCAGTAAGCTGTGATGAAGCATTTTTAGATGTCACATACTTGGAAGGGGTAGATACAGATATGTTAGCGTCAACTGTAAGACGAGAGATTTTTGAGACTACTGGATGCAGTGCAAGTGCTGGCATAGCTGGAAATATGCTCATGGCTCGCCTTGCAACAAGAACTGCTAAACCAGATGGTCAATGCAACATTCCACCCGAAAAGGTGGATGATTATTTACATGAACTTCCCATCAAGACGCTTCCAGGAATAGGGCACGTTTTAGAGGAGAAGTTGAAGAAGCGAAATGTTTTGACGTGTGGACAGTTGCACACAATTCCTAAGGATTCTCTTCAAAAGGACTTCGGAATAAAAACTGGGGAGATGTTGTGGAATCATAGTAGAGGCATAGATAATCGGCTAGTTGGGGTGATTCAGGAGAGTAAATCTATTGGTGCTGAAGTGAATTGGGGTGTGAGATTCAGAGATTTGAAAGATAGTCATCACTTCCTTTCAAATCTTTGCAAGGAGGTTTCTTTACGCTTGCAAGGATGTGCAGTGCAGGGCCGTACTTTTACCCTTAAGATTAAGAAAAGAAGAAAAGATGCACAGGAGCCCGTGAAGTATATGGGATGTGGAGACTGTGAAAACTTGAGTCACTCTGTAACGGTTCCAGTTGCTACTGATGATGTTGAAGTGCTCCAGAGAATAACAAAGCAGCTCTTTGGGCATTTCTCTTTAGATGTCAAGGAGATTCGAGGTATTGGTTTGCAAGTTTCCAAGCTTGAGAGCATAGATGCTTCAAAGCAAGGACTTGGAAAAAACTCTTTTAAATCATGGCTACAATCTGCCAAAGCAAGTACAGAAGAACAATCCAATATTTATTCTATAGATGATGGGGAGAAGAAGCATGCAGATTGTGAGGATCGGGGAACTCCTCGAACTTTAGGCCCGCTATGCGAAACTTCACTTCATATTCAAGCTGCAGTAGACAATCATCGGTCTAGTGGTGAAACTTCTGCGAACCAGGTTTCAGCAGCACCACCTTTATGTCATCTTGATTTAGGAGTTATTGAAAGTCTTCCTCCAGAAATTTTTACAGAATTAAACGGGATCTATGCTGGCAAGTTGGTTGATTTTGTTGCAAACAATAAACGAGAATTGAGTGCAACAGCATCACATGAACGAGTAGATGGTACAAATAACGGGAGTGAGAGACATCTCTTCAATGATATGCGTCTACGGGATGAAATTGTATCAGAACCCAAGCATACAGTCGTAGAAAAGCAAGCAATGCCGTCTTCTGTGGGAGGGTCCTGTGATGTGGCAGTTTTGACATCAGAGCTTGGAAATACTGATATTATGCCTGCATCTTTAAGTCAAGTAGAACCCTCGGTGTTGCAAGAATTGCCTCAAGAACTGAGAGCTGACTTACTTGAGCAGCTTCCTGCACACAGGACATCTGACTTGGCTTCAAGTGCTGCCTCGGTCTCTCTTGCTAAGATACCTGGAGAATCAATTGGTTTGAGGGAAAAAAATCTTTCTAGATCAAATGATCTTGCATTTAACAACAATCTTTGGATGGGAGATCCTCCACAGTGGGTTGAAGAGTTCAAAGCCGGCAAATGCATGATATTAAATATTCTTGCTGAGATGTATGACAAATCAGGGTCAAGGGGAACTTTATCTGTAATTCTGCGCAGTACTATCATGAAATGTCAACACCCCCTAGATTCAAGTTCTGACTGTTGGATTCAAGCTGTATATAGCTTCTCTGAGCTTCTCAGGCAGTACGTTACTTTAAAGATTGACTCAGATCTTGAAGAGATCTATGTTTGTTTTCGGCTTCTGAGGAGGTTTACAACAAAGTCAAAGTTTTTCTTACAAGTATACAGTGATGTATTTCCTTACCTTCAGGCATCTTTCACTGATAGCTATGGAGGAAACTTGCAGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000002 GO:0000731 GO:0002200 GO:0002206 GO:0002376 GO:0002377 GO:0002440 GO:0002520 GO:0002565 GO:0003674 GO:0003824 GO:0003887 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010224 GO:0016043 GO:0016444 GO:0016445 GO:0016740 GO:0016772 GO:0016779 GO:0017125 GO:0018130 GO:0019438 GO:0019985 GO:0031974 GO:0031981 GO:0032042 GO:0032501 GO:0032502 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0035822 GO:0035861 GO:0042276 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043504 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0070013 GO:0070987 GO:0071704 GO:0071840 GO:0071897 GO:0090304 GO:0090734 GO:0140097 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

BRCT_2 IMS IMS_C IMS_HHH LIG3_BRCT

Protein Analysis

1116

Amino Acids

123.98

Weight (kDa)

6.15

Isoelectric Point (pI)

52.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BRCT	PF00533	88 - 162	2.8e-08	BRCA1 C Terminus (BRCT) domain
BRCT_2	PF16589	89 - 174	1e-06	BRCT domain
LIG3_BRCT	PF16759	89 - 165	6.4e-06	DNA ligase 3 BRCT domain
IMS	PF00817	377 - 524	7.7e-44	impB/mucB/samB family
IMS_HHH	PF11798	536 - 567	5e-06	IMS family HHH motif
IMS_HHH_1	PF21999	550 - 601	2.4e-19	DNA polymerase-iota, thumb domain
IMS_C	PF11799	611 - 731	8.1e-19	impB/mucB/samB family C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004782)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44750 AT5G44750
fragaria_vesca	FvH4_1g23540 FvH4_2g04972
malus_domestica	MD05G1091100.v1.1 MD10G1098400.v1.1
prunus_persica	Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1
pyrus_communis	pycom10g08430
rosa_chinensis	RchiOBHm_Chr6g0254741
rosa_laevigata	RLG00000014893
rosa_multiflora	Rmu_sc0007716.1_g000003
rosa_roxburghii	Rroxscaffold_7G00210560
rosa_rugosa	Rorug05G0554600
rosa_samantha	Rh6AG071600 Rh6BG063800 Rh6CG063200 Rh6DG060300
rosa_wichuraiana	Rw6G006270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1338
AatII	GACGTC	1 cut(s)	379
Acc16I	TGCGCA	1 cut(s)	3089
AccB1I	GGYRCC	2 cut(s)	122, 304
AccI	GTMKAC	4 cut(s)	782, 2379, 2629, 3279
AccIII	TCCGGA	1 cut(s)	586
AciI	CCGC	3 cut(s)	444, 491, 2342
AclWI	GGATC	8 cut(s)	156, 169, 690, 959, 972, 2322, 2510, 2972
AcsI	RAATTY	4 cut(s)	10, 728, 1236, 2481
AcuI	CTGAAG	6 cut(s)	197, 636, 813, 879, 1869, 3287
AcyI	GRCGYC	3 cut(s)	111, 123, 376
AfaI	GTAC	8 cut(s)	853, 877, 1407, 1960, 2251, 2587, 3094, 3182
AfiI	CCNNNNNNNGG	3 cut(s)	179, 638, 1661
AflII	CTTAAG	2 cut(s)	1181, 1970
AflIII	ACRYGT	2 cut(s)	333, 1706
AjiI	CACGTC	1 cut(s)	1707
AjnI	CCWGG	7 cut(s)	156, 662, 998, 1019, 1654, 2415, 2896
Alw21I	GWGCWC	2 cut(s)	1096, 2091
Alw26I	GTCTC	7 cut(s)	118, 147, 367, 1499, 2022, 2599, 2884
AlwI	GGATC	8 cut(s)	156, 169, 690, 959, 972, 2322, 2510, 2972
AlwNI	CAGNNNCTG	2 cut(s)	322, 909
Ama87I	CYCGRG	1 cut(s)	1260
Aor13HI	TCCGGA	1 cut(s)	586
AoxI	GGCC	2 cut(s)	1954, 2338
ApeKI	GCWGC	7 cut(s)	903, 1003, 2107, 2372, 2426, 2830, 2870
ApoI	RAATTY	4 cut(s)	10, 728, 1236, 2481
ArsI	GACNNNNNNTTYG	2 cut(s)	1130, 1162
Asp700I	GAANNNNTTC	2 cut(s)	949, 2469
AspA2I	CCTAGG	1 cut(s)	106
AspLEI	GCGC	2 cut(s)	125, 3090
AspS9I	GGNCC	4 cut(s)	659, 1954, 2339, 2703
AsuHPI	GGTGA	3 cut(s)	800, 1831, 2411
AsuII	TTCGAA	1 cut(s)	8
AvaI	CYCGRG	1 cut(s)	1260
AvaII	GGWCC	2 cut(s)	659, 2703
AvrII	CCTAGG	1 cut(s)	106
AxyI	CCTNAGG	1 cut(s)	1731
BaeGI	GKGCMC	2 cut(s)	1229, 1668
BamHI	GGATCC	2 cut(s)	161, 964
BanI	GGYRCC	2 cut(s)	122, 304
BanII	GRGCYC	2 cut(s)	453, 2007
BbsI	GAAGAC	3 cut(s)	642, 2462, 2682
Bbv12I	GWGCWC	2 cut(s)	1096, 2091
BbvI	GCAGC	7 cut(s)	915, 990, 2119, 2359, 2438, 2842, 2857
BccI	CCATC	6 cut(s)	287, 1580, 1649, 2279, 2576, 2965
BceAI	ACGGC	2 cut(s)	1941, 2671
BciT130I	CCWGG	7 cut(s)	158, 664, 1000, 1021, 1656, 2417, 2898
BclI	TGATCA	2 cut(s)	619, 1366
BcoDI	GTCTC	7 cut(s)	118, 147, 367, 1499, 2022, 2599, 2884
BfaI	CTAG	9 cut(s)	107, 312, 873, 939, 1050, 1811, 2394, 2934, 3119
BfmI	CTRYAG	5 cut(s)	397, 1194, 1396, 2277, 2373
BfoI	RGCGCY	1 cut(s)	126
BfrI	CTTAAG	2 cut(s)	1181, 1970
BglII	AGATCT	2 cut(s)	3205, 3216
BisI	GCNGC	8 cut(s)	492, 904, 1004, 2108, 2373, 2427, 2831, 2871
BlnI	CCTAGG	1 cut(s)	106
BlsI	GCNGC	8 cut(s)	493, 905, 1005, 2109, 2374, 2428, 2832, 2872
BmcAI	AGTACT	1 cut(s)	3094
Bme1390I	CCNGG	7 cut(s)	158, 664, 1000, 1021, 1656, 2417, 2898
Bme18I	GGWCC	2 cut(s)	659, 2703
BmeT110I	CYCGRG	1 cut(s)	1260
BmgBI	CACGTC	1 cut(s)	1707
BmgT120I	GGNCC	4 cut(s)	659, 1954, 2339, 2703
BmrFI	CCNGG	7 cut(s)	158, 664, 1000, 1021, 1656, 2417, 2898
BmrI	ACTGGG	2 cut(s)	449, 1776
BmsI	GCATC	8 cut(s)	823, 1288, 1505, 1984, 2176, 2573, 2768, 3317
BmuI	ACTGGG	2 cut(s)	449, 1776
BpiI	GAAGAC	3 cut(s)	642, 2462, 2682
BpmI	CTGGAG	4 cut(s)	1042, 2075, 2460, 2919
Bpu10I	CCTNAGC	1 cut(s)	1302
Bpu14I	TTCGAA	1 cut(s)	8
BpuEI	CTTGAG	5 cut(s)	526, 2062, 2195, 2787, 2846
BsaBI	GATNNNNATC	2 cut(s)	600, 1890
BsaHI	GRCGYC	3 cut(s)	111, 123, 376
BsaI	GGTCTC	1 cut(s)	2884
BsaJI	CCNNGG	7 cut(s)	106, 157, 551, 662, 1155, 2781, 2874
BsaWI	WCCGGW	2 cut(s)	204, 586
BsaXI	ACNNNNNCTCC	2 cut(s)	1763, 1793
Bsc4I	CCNNNNNNNGG	3 cut(s)	179, 638, 1661
Bse118I	RCCGGY	1 cut(s)	3008
Bse1I	ACTGG	6 cut(s)	455, 476, 717, 1516, 1771, 2063
Bse21I	CCTNAGG	1 cut(s)	1731
Bse3DI	GCAATG	1 cut(s)	2688
Bse8I	GATNNNNATC	2 cut(s)	600, 1890
BseAI	TCCGGA	1 cut(s)	586
BseBI	CCWGG	7 cut(s)	158, 664, 1000, 1021, 1656, 2417, 2898
BseDI	CCNNGG	7 cut(s)	106, 157, 551, 662, 1155, 2781, 2874
BseGI	GGATG	8 cut(s)	865, 1290, 1520, 1624, 1946, 2027, 2641, 2976
BseJI	GATNNNNATC	2 cut(s)	600, 1890
BseLI	CCNNNNNNNGG	3 cut(s)	179, 638, 1661
BseMI	GCAATG	1 cut(s)	2688
BseNI	ACTGG	6 cut(s)	455, 476, 717, 1516, 1771, 2063
BseRI	GAGGAG	6 cut(s)	127, 139, 1370, 1691, 2316, 3256
BseSI	GKGCMC	2 cut(s)	1229, 1668
BseXI	GCAGC	7 cut(s)	915, 990, 2119, 2359, 2438, 2842, 2857
BseYI	CCCAGC	1 cut(s)	1280
BsgI	GTGCAG	4 cut(s)	989, 1965, 1970, 2823
BshFI	GGCC	2 cut(s)	1956, 2340
BshNI	GGYRCC	2 cut(s)	122, 304
BsiHKAI	GWGCWC	2 cut(s)	1096, 2091
BsiHKCI	CYCGRG	1 cut(s)	1260
BsiSI	CCGG	4 cut(s)	205, 587, 1256, 3009
BslI	CCNNNNNNNGG	3 cut(s)	179, 638, 1661
BsmAI	GTCTC	7 cut(s)	118, 147, 367, 1499, 2022, 2599, 2884
BsmBI	CGTCTC	3 cut(s)	118, 147, 367
BsnI	GGCC	2 cut(s)	1956, 2340
Bso31I	GGTCTC	1 cut(s)	2884
BsoBI	CYCGRG	1 cut(s)	1260
Bsp119I	TTCGAA	1 cut(s)	8
Bsp1286I	GDGCHC	6 cut(s)	453, 1096, 1229, 1668, 2007, 2091
Bsp13I	TCCGGA	1 cut(s)	586
BspACI	CCGC	3 cut(s)	444, 491, 2342
BspANI	GGCC	2 cut(s)	1956, 2340
BspEI	TCCGGA	1 cut(s)	586
BspHI	TCATGA	1 cut(s)	3099
BspMAI	CTGCAG	3 cut(s)	401, 1400, 2377
BspPI	GGATC	8 cut(s)	156, 169, 690, 959, 972, 2322, 2510, 2972
BspT104I	TTCGAA	1 cut(s)	8
BspT107I	GGYRCC	2 cut(s)	122, 304
BspTI	CTTAAG	2 cut(s)	1181, 1970
BspTNI	GGTCTC	1 cut(s)	2884
BsrDI	GCAATG	1 cut(s)	2688
BsrFI	RCCGGY	1 cut(s)	3008
BsrI	ACTGG	6 cut(s)	455, 476, 717, 1516, 1771, 2063
BssAI	RCCGGY	1 cut(s)	3008
BssECI	CCNNGG	7 cut(s)	106, 157, 551, 662, 1155, 2781, 2874
BssNAI	GTATAC	2 cut(s)	783, 3280
BssNI	GRCGYC	3 cut(s)	111, 123, 376
BssT1I	CCWWGG	2 cut(s)	106, 551
Bst1107I	GTATAC	2 cut(s)	783, 3280
Bst2UI	CCWGG	7 cut(s)	158, 664, 1000, 1021, 1656, 2417, 2898
Bst6I	CTCTTC	6 cut(s)	77, 254, 1746, 2618, 2991, 3207
BstACI	GRCGYC	3 cut(s)	111, 123, 376
BstAFI	CTTAAG	2 cut(s)	1181, 1970
BstAPI	GCANNNNNTGC	3 cut(s)	909, 2683, 2797
BstBI	TTCGAA	1 cut(s)	8
BstDSI	CCRYGG	1 cut(s)	1155
BstF5I	GGATG	8 cut(s)	865, 1290, 1520, 1624, 1946, 2027, 2641, 2976
BstH2I	RGCGCY	1 cut(s)	126
BstHHI	GCGC	2 cut(s)	125, 3090
BstMAI	GTCTC	7 cut(s)	118, 147, 367, 1499, 2022, 2599, 2884
BstNI	CCWGG	7 cut(s)	158, 664, 1000, 1021, 1656, 2417, 2898
BstNSI	RCATGY	2 cut(s)	337, 2303
BstSCI	CCNGG	7 cut(s)	156, 662, 998, 1019, 1654, 2415, 2896
BstSFI	CTRYAG	5 cut(s)	397, 1194, 1396, 2277, 2373
BstSLI	GKGCMC	2 cut(s)	1229, 1668
BstV1I	GCAGC	7 cut(s)	915, 990, 2119, 2359, 2438, 2842, 2857
BstV2I	GAAGAC	3 cut(s)	642, 2462, 2682
BstX2I	RGATCY	7 cut(s)	161, 695, 964, 2502, 2977, 3205, 3216
BstXI	CCANNNNNNTGG	1 cut(s)	976
BstYI	RGATCY	7 cut(s)	161, 695, 964, 2502, 2977, 3205, 3216
BstZ17I	GTATAC	2 cut(s)	783, 3280
Bsu36I	CCTNAGG	1 cut(s)	1731
BsuRI	GGCC	2 cut(s)	1956, 2340
BtgI	CCRYGG	1 cut(s)	1155
BtrI	CACGTC	1 cut(s)	1707
BtsCI	GGATG	8 cut(s)	865, 1290, 1520, 1624, 1946, 2027, 2641, 2976
BtsI	GCAGTG	4 cut(s)	1227, 1393, 1525, 1953
BtsIMutI	CAGTG	9 cut(s)	699, 903, 1227, 1393, 1525, 1953, 2993, 3289, 3315
CaiI	CAGNNNCTG	2 cut(s)	322, 909
CciI	TCATGA	1 cut(s)	3099
CfoI	GCGC	2 cut(s)	125, 3090
Cfr10I	RCCGGY	1 cut(s)	3008
Cfr13I	GGNCC	4 cut(s)	659, 1954, 2339, 2703
CseI	GACGC	4 cut(s)	100, 1467, 1657, 2615
CsiI	ACCWGGT	1 cut(s)	2415
Csp6I	GTAC	8 cut(s)	852, 876, 1406, 1959, 2250, 2586, 3093, 3181
CviQI	GTAC	8 cut(s)	852, 876, 1406, 1959, 2250, 2586, 3093, 3181
DinI	GGCGCC	1 cut(s)	124
DraI	TTTAAA	2 cut(s)	2221, 3192
Eam1104I	CTCTTC	6 cut(s)	77, 254, 1746, 2618, 2991, 3207
EarI	CTCTTC	6 cut(s)	77, 254, 1746, 2618, 2991, 3207
Eco130I	CCWWGG	2 cut(s)	106, 551
Eco24I	GRGCYC	2 cut(s)	453, 2007
Eco31I	GGTCTC	1 cut(s)	2884
Eco47I	GGWCC	2 cut(s)	659, 2703
Eco57I	CTGAAG	6 cut(s)	197, 636, 813, 879, 1869, 3287
Eco81I	CCTNAGG	1 cut(s)	1731
Eco88I	CYCGRG	1 cut(s)	1260
EcoO109I	RGGNCCY	2 cut(s)	659, 2703
EcoRI	GAATTC	1 cut(s)	10
EcoRII	CCWGG	7 cut(s)	156, 662, 998, 1019, 1654, 2415, 2896
EcoT14I	CCWWGG	2 cut(s)	106, 551
EcoT22I	ATGCAT	1 cut(s)	3020
EcoT38I	GRGCYC	2 cut(s)	453, 2007
EgeI	GGCGCC	1 cut(s)	124
EheI	GGCGCC	1 cut(s)	124
ErhI	CCWWGG	2 cut(s)	106, 551
Esp3I	CGTCTC	3 cut(s)	118, 147, 367
FalI	AAGNNNNNCTT	8 cut(s)	32, 64, 2096, 2128, 3055, 3087, 3254, 3286
FauI	CCCGC	1 cut(s)	2349
FauNDI	CATATG	2 cut(s)	616, 1351
FbaI	TGATCA	2 cut(s)	619, 1366
FblI	GTMKAC	4 cut(s)	782, 2379, 2629, 3279
Fnu4HI	GCNGC	8 cut(s)	492, 904, 1004, 2108, 2373, 2427, 2831, 2871
FokI	GGATG	8 cut(s)	872, 1297, 1527, 1631, 1953, 2034, 2648, 2983
FriOI	GRGCYC	2 cut(s)	453, 2007
Fsp4HI	GCNGC	8 cut(s)	492, 904, 1004, 2108, 2373, 2427, 2831, 2871
FspBI	CTAG	9 cut(s)	107, 312, 873, 939, 1050, 1811, 2394, 2934, 3119
FspI	TGCGCA	1 cut(s)	3089
GlaI	GCGC	2 cut(s)	124, 3089
GluI	GCNGC	8 cut(s)	492, 904, 1004, 2108, 2373, 2427, 2831, 2871
GsaI	CCCAGC	1 cut(s)	1284
GsuI	CTGGAG	4 cut(s)	1042, 2075, 2460, 2919
HaeII	RGCGCY	1 cut(s)	126
HaeIII	GGCC	2 cut(s)	1956, 2340
HapII	CCGG	4 cut(s)	205, 587, 1256, 3009
HgaI	GACGC	4 cut(s)	100, 1467, 1657, 2615
HhaI	GCGC	2 cut(s)	125, 3090
Hin1I	GRCGYC	3 cut(s)	111, 123, 376
Hin6I	GCGC	2 cut(s)	123, 3088
HinP1I	GCGC	2 cut(s)	123, 3088
HincII	GTYRAC	2 cut(s)	1482, 3110
HindII	GTYRAC	2 cut(s)	1482, 3110
HindIII	AAGCTT	3 cut(s)	46, 234, 2171
HpaII	CCGG	4 cut(s)	205, 587, 1256, 3009
HphI	GGTGA	3 cut(s)	800, 1831, 2411
Hpy166II	GTNNAC	9 cut(s)	783, 1316, 1482, 1712, 2380, 2630, 3110, 3249, 3280
Hpy8I	GTNNAC	9 cut(s)	783, 1316, 1482, 1712, 2380, 2630, 3110, 3249, 3280
HpyAV	CCTTC	6 cut(s)	163, 318, 574, 766, 1448, 3311
HpyCH4IV	ACGT	4 cut(s)	376, 1668, 1706, 3183
HpySE526I	ACGT	4 cut(s)	376, 1668, 1706, 3183
Hsp92I	GRCGYC	3 cut(s)	111, 123, 376
HspAI	GCGC	2 cut(s)	123, 3088
KasI	GGCGCC	1 cut(s)	122
Kpn2I	TCCGGA	1 cut(s)	586
KroI	GCCGGC	1 cut(s)	3008
KroNI	GCCGGC	1 cut(s)	3010
Ksp22I	TGATCA	2 cut(s)	619, 1366
LmnI	GCTCC	5 cut(s)	152, 456, 1099, 2002, 2094
Lsp1109I	GCAGC	7 cut(s)	915, 990, 2119, 2359, 2438, 2842, 2857
LweI	GCATC	8 cut(s)	823, 1288, 1505, 1984, 2176, 2573, 2768, 3317
MabI	ACCWGGT	1 cut(s)	2415
MaeI	CTAG	9 cut(s)	107, 312, 873, 939, 1050, 1811, 2394, 2934, 3119
MaeII	ACGT	4 cut(s)	376, 1668, 1706, 3183
MaeIII	GTNAC	8 cut(s)	185, 382, 542, 677, 1441, 2045, 2053, 3184
MfeI	CAATTG	1 cut(s)	2907
MflI	RGATCY	7 cut(s)	161, 695, 964, 2502, 2977, 3205, 3216
MhlI	GDGCHC	6 cut(s)	453, 1096, 1229, 1668, 2007, 2091
Mly113I	GGCGCC	1 cut(s)	123
MlyI	GAGTC	4 cut(s)	584, 785, 2053, 3194
MmeI	TCCRAC	3 cut(s)	81, 1047, 3119
Mph1103I	ATGCAT	1 cut(s)	3020
MroI	TCCGGA	1 cut(s)	586
MroNI	GCCGGC	1 cut(s)	3008
MroXI	GAANNNNTTC	2 cut(s)	949, 2469
MslI	CAYNNNNRTG	1 cut(s)	2437
MspA1I	CMGCKG	1 cut(s)	444
MspCI	CTTAAG	2 cut(s)	1181, 1970
MspI	CCGG	4 cut(s)	205, 587, 1256, 3009
MspR9I	CCNGG	7 cut(s)	158, 664, 1000, 1021, 1656, 2417, 2898
MunI	CAATTG	1 cut(s)	2907
MvaI	CCWGG	7 cut(s)	158, 664, 1000, 1021, 1656, 2417, 2898
NaeI	GCCGGC	1 cut(s)	3010
NarI	GGCGCC	1 cut(s)	123
NdeI	CATATG	2 cut(s)	616, 1351
NgoMIV	GCCGGC	1 cut(s)	3008
NmuCI	GTSAC	2 cut(s)	1441, 2045
NsbI	TGCGCA	1 cut(s)	3089
NsiI	ATGCAT	1 cut(s)	3020
NspI	RCATGY	2 cut(s)	337, 2303
NspV	TTCGAA	1 cut(s)	8
PaeI	GCATGC	1 cut(s)	2303
PaeR7I	CTCGAG	1 cut(s)	1260
PagI	TCATGA	1 cut(s)	3099
PciI	ACATGT	1 cut(s)	333
PdiI	GCCGGC	1 cut(s)	3010
PdmI	GAANNNNTTC	2 cut(s)	949, 2469
PfoI	TCCNGGA	1 cut(s)	1654
PkrI	GCNGC	8 cut(s)	493, 905, 1005, 2109, 2374, 2428, 2832, 2872
PleI	GAGTC	4 cut(s)	584, 784, 2052, 3194
PluTI	GGCGCC	1 cut(s)	126
PpsI	GAGTC	4 cut(s)	584, 784, 2052, 3194
PpuMI	RGGWCCY	2 cut(s)	659, 2703
PscI	ACATGT	1 cut(s)	333
PsiI	TTATAA	1 cut(s)	1338
Psp5II	RGGWCCY	2 cut(s)	659, 2703
Psp6I	CCWGG	7 cut(s)	156, 662, 998, 1019, 1654, 2415, 2896
PspFI	CCCAGC	1 cut(s)	1280
PspGI	CCWGG	7 cut(s)	156, 662, 998, 1019, 1654, 2415, 2896
PspPI	GGNCC	4 cut(s)	659, 1954, 2339, 2703
PspPPI	RGGWCCY	2 cut(s)	659, 2703
PstI	CTGCAG	3 cut(s)	401, 1400, 2377
PstNI	CAGNNNCTG	2 cut(s)	322, 909
PsuI	RGATCY	7 cut(s)	161, 695, 964, 2502, 2977, 3205, 3216
RsaI	GTAC	8 cut(s)	853, 877, 1407, 1960, 2251, 2587, 3094, 3182
RsaNI	GTAC	8 cut(s)	852, 876, 1406, 1959, 2250, 2586, 3093, 3181
RseI	CAYNNNNRTG	1 cut(s)	2437
SatI	GCNGC	8 cut(s)	492, 904, 1004, 2108, 2373, 2427, 2831, 2871
Sau96I	GGNCC	4 cut(s)	659, 1954, 2339, 2703
ScaI	AGTACT	1 cut(s)	3094
SchI	GAGTC	4 cut(s)	584, 785, 2053, 3194
ScrFI	CCNGG	7 cut(s)	158, 664, 1000, 1021, 1656, 2417, 2898
SduI	GDGCHC	6 cut(s)	453, 1096, 1229, 1668, 2007, 2091
SexAI	ACCWGGT	1 cut(s)	2415
SfaNI	GCATC	8 cut(s)	823, 1288, 1505, 1984, 2176, 2573, 2768, 3317
SfcI	CTRYAG	5 cut(s)	397, 1194, 1396, 2277, 2373
SfoI	GGCGCC	1 cut(s)	124
Sfr274I	CTCGAG	1 cut(s)	1260
SfuI	TTCGAA	1 cut(s)	8
SinI	GGWCC	2 cut(s)	659, 2703
SlaI	CTCGAG	1 cut(s)	1260
SmiMI	CAYNNNNRTG	1 cut(s)	2437
SmlI	CTYRAG	8 cut(s)	505, 1181, 1260, 1970, 2041, 2174, 2802, 2825
SmoI	CTYRAG	8 cut(s)	505, 1181, 1260, 1970, 2041, 2174, 2802, 2825
SphI	GCATGC	1 cut(s)	2303
SsiI	CCGC	3 cut(s)	444, 491, 2342
SspDI	GGCGCC	1 cut(s)	122
SspI	AATATT	3 cut(s)	931, 2269, 3031
SspMI	CTAG	9 cut(s)	107, 312, 873, 939, 1050, 1811, 2394, 2934, 3119
StyD4I	CCNGG	7 cut(s)	156, 662, 998, 1019, 1654, 2415, 2896
StyI	CCWWGG	2 cut(s)	106, 551
TaiI	ACGT	4 cut(s)	379, 1671, 1709, 3186
TaqI	TCGA	9 cut(s)	8, 239, 281, 371, 709, 943, 1261, 2146, 2329
TaqII	GACCGA	2 cut(s)	2379, 2866
TatI	WGTACW	4 cut(s)	851, 1405, 2249, 3092
TauI	GCSGC	1 cut(s)	494
TscAI	CASTG	9 cut(s)	706, 903, 1234, 1400, 1525, 1953, 2993, 3289, 3322
TseFI	GTSAC	2 cut(s)	1441, 2045
TseI	GCWGC	7 cut(s)	903, 1003, 2107, 2372, 2426, 2830, 2870
Tsp45I	GTSAC	2 cut(s)	1441, 2045
TspGWI	ACGGA	1 cut(s)	1144
TspRI	CASTG	9 cut(s)	706, 903, 1234, 1400, 1525, 1953, 2993, 3289, 3322
Vha464I	CTTAAG	2 cut(s)	1181, 1970
VpaK11BI	GGWCC	2 cut(s)	659, 2703
XapI	RAATTY	4 cut(s)	10, 728, 1236, 2481
XbaI	TCTAGA	1 cut(s)	2933
XceI	RCATGY	2 cut(s)	337, 2303
XhoI	CTCGAG	1 cut(s)	1260
XmaJI	CCTAGG	1 cut(s)	106
XmiI	GTMKAC	4 cut(s)	782, 2379, 2629, 3279
XmnI	GAANNNNTTC	2 cut(s)	949, 2469
XspI	CTAG	9 cut(s)	107, 312, 873, 939, 1050, 1811, 2394, 2934, 3119
ZraI	GACGTC	1 cut(s)	377
ZrmI	AGTACT	1 cut(s)	3094
Zsp2I	ATGCAT	1 cut(s)	3020

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.