Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0004782

Physical Location & Seq

Genomic Coordinates Forward (+)

9924295 .. 9935321

Gene Structure 11027 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG063800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2880 bp

ATGAGTTTGAATTCGTCAAAATCGTCTGGTTCAAAATCCAAGCGAAGCTTCAATTCCAACAATTCCACTAACAACAACAAGAAGAAGACGAAGATTAGCACCAATCAGAAAACCCTAGGCGGCGTCTCTTGGGGAGCCAATTCTCTCTCCTCCTCTCGCTCCTCCTTCCAAAGATCCCCCTTTCCCGATTTCGGCAGTTATATGGTAGAGAAGAACAGGAAACTGCAGAATCAGTTTGATAGTGAAGCTTCGAGTTGTTTGGGGTCCGAGAGGAGTATTTTTCGTGGGGTTTCGATTTTCGTAGATGGTTTCACAGTGCCTTCTAGTCAGGAACTGAGAGCATACATGGTGAATTATGGTGGTAGATATGAGAATTACTTTTCAAGGCGTCGTGTTACACATATCATCTGCAGTAATCTTCCTGACAGTAAAATAAAAAATCTGAGGTCTTTCAGTGGAGGGCTCCCAGTTGTGAAGCCTAACTGGATTGTAGATTCAGTTGCTGCTAACAAACTCTTGAGTTGGGTTCCTTACCAACTTGAGCAGGTTTCTTGTAACCAACCAAGGTTGTCAGCCTTCTTTGCTCCGAAGATAATCCCCAACTGTGATGATGCTTTGAGAGATACATCTGATCAAGTGAAACCTGAAAGTGAGGATACATCTTTGGTAGGAACCAGATTAGAAGATGATAACAAGTCAGTATGCAGATCCACTGAACACGAACAGGAAAGTAGCGGAGAATCTGATGATATGATATATGAAAACACCGATGGACAATTTGGTGAGGAGTTGTATACAGGTGAAAAATATTCTGAAGTTAAACAAGAAGAAACGCCTACTTCAGATGCAGAAGATAATGTCAGCATAAAGGATGAATTTAAATCTAGTACCCACCAGCACTCTGCTTCAGTTAGCAGTAACTGCTTGCCAAGCTCAGAAAATTTTGGGTCTAATCGAAGTCATTCAACTCTTGGGGATCCCAATTTTGTGGAAAATTATTTTAAGAGCTCAAGGCTGCACTTTATAGGAACCTGGAGAAATCGGTATCGCAAGCGTTTTCCTAGTTCGTCTAAAGGGTTGGACAACACAGATTCTAACCGTTGTGCTCCTGATAGTTCTCTGAAGACTCCCATTATACATATTGACATGGTGGATGATTATTTATATGAACTTCCCATCAAGACGCTTCCAGGAATAGGACACGTTCTAGAGGAGAAGTTGAAGAAGCGAAATGTTTTGACGTGTGGACAGTTGCGTATGATTCCTAAGGACTCTCTTCAAAAGGACTTCGGAATAAAAACTGGGGAGATGTTGTGGAATCATAGTAGAGGCATAGATAATCGGCTAGTTGGGGTGATTCAGGAAAGTAAGTCTATTGGTGCTGAAGTGAATTGGGGTGTGAGATTCAAGGATTTGAAAGATAGTCATCACTTCCTTTCAAATCTTTGCAAGGAGGTTTCTTTACGCTTGCAAGGATGCACAGTGCAGGGTCGTACTTTTACCCTTAAGATTAAGAAAAGAAGAAAAGATGCACAGGAGCCTGTGAAGTATATGGGATGTGGAGACTGTGAAAACTTGAGCCACTCTGTCACGGTTCCAGTTGCTACTGATGATGTGGAAGTGCTTCAGAGAATAACAAAGCAGCTCTTTGGGTTTTTCTCTCTAGATGTCAAGGAGATTCGAGGTATTGGTTTGCAAGTTTCCAAGCTTGAGAGTGTAGATGCTTCAAAGCAAGGACTTGGAAAAAACTCTTTGAAATCGTGGCTCCAATCTGCCAAAGCAAGTACAGAAGAACAATCCAATACTTATTCTGTAGATGATGGGAAGAGGGCGCATGCAGATTGTGAGGGTCGGGGAACTCATCGAACTTCAGGCCAGCTATGCGGAAATTCACTTGGTATTCCAACTCCAGTGGACAATCATCGGTGTAGTGGTGAAACTTCTGTGAACCAGGTTTCAGCACCACCACCTTTATGTCATCTTGATTTAGGAGTTATTGAAAGTCTTCCTCCAGAACTTTTTACGGAATTAAACGGGATCTATGGTGGCAAGTTGGTTGATTTTGTTGCTAAAAATAAACGAGAATTCAGTGCAACAACATCTCATGAACGAGTAGATGGTGCAAAGAACGGGAGTGAGAGTCATCTCTTCAATGATATGCACCTGCAGGATGAAAATGTATTAGAACCCAAGCATACAGTTGTAGAAAAACAAGCAATGCCTTCTTCTGTGGGAGGGTCCAGTGATGTGGCAGCTTCAACATCAGGTCTTGGAAATACTGATATAATGCCTGCATCTTTAAGTCAAGTAGATCCCTCGGTGTTGCAACAATTACCTCAAGAACTGAGAGTTGACTTACTTGAGCAGCTTCCTGCACACAGGAGATATGACTTAGCTTCAAGTGCTGCCTCGGACCCTCTTGCAGAGATACCTGGAGAATCAATAGGTTTGAGGGACGGAAATCATTCTGGATCACATGATCTTGCATTTAACAAGCTTTGGATTGGAAATCCTCCACAGTGGGTTGAAGAGTTCAAAGCCAGCAAATGCATGATATTAAATATTCTTGCTGAGATGTATGACAAATCAGGGTCAAGTGGAAACTTATCTGTAATTCTGCGCAGTACTATCATGGAATGTCAACATCCTCTAGATTCAAGTTCTGACTGTTGGATTCAAGCTGTATACAGCTTCTCTGAGCTTCTCAGGCAGTATGTTACATTAAAGATCGACTCAGATATTGAAGAGATCTATGTTTGTTTTCGGCTTCTTAGAAGGTTTACAACGAAGTCAAAGTTTTTCTTACAAGTATATAGTGATGTCTTTCCTTACCTTCAGGCATCTTTCACTGATAGCTATGGTGGAAACTTGCACATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000002 GO:0000731 GO:0002200 GO:0002206 GO:0002376 GO:0002377 GO:0002440 GO:0002520 GO:0002565 GO:0003674 GO:0003824 GO:0003887 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010224 GO:0016043 GO:0016444 GO:0016445 GO:0016740 GO:0016772 GO:0016779 GO:0017125 GO:0018130 GO:0019438 GO:0019985 GO:0031974 GO:0031981 GO:0032042 GO:0032501 GO:0032502 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0035822 GO:0035861 GO:0042276 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043504 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0070013 GO:0070987 GO:0071704 GO:0071840 GO:0071897 GO:0090304 GO:0090734 GO:0140097 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

BRCT_2 IMS IMS_C IMS_HHH LIG3_BRCT

Protein Analysis

959

Amino Acids

106.64

Weight (kDa)

6.3

Isoelectric Point (pI)

51.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BRCT	PF00533	91 - 166	1.5e-09	BRCA1 C Terminus (BRCT) domain
BRCT_2	PF16589	93 - 178	5.5e-07	BRCT domain
LIG3_BRCT	PF16759	93 - 169	9.1e-07	DNA ligase 3 BRCT domain
IMS_HHH	PF11798	383 - 412	4.6e-06	IMS family HHH motif
IMS_HHH_1	PF21999	395 - 446	1.2e-19	DNA polymerase-iota, thumb domain
IMS_C	PF11799	456 - 577	2.4e-18	impB/mucB/samB family C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004782)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44750 AT5G44750
fragaria_vesca	FvH4_1g23540 FvH4_2g04972
malus_domestica	MD05G1091100.v1.1 MD10G1098400.v1.1
prunus_persica	Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1 Prupe.8G136700_v2.0.a1
pyrus_communis	pycom10g08430
rosa_chinensis	RchiOBHm_Chr6g0254741
rosa_laevigata	RLG00000014893
rosa_multiflora	Rmu_sc0007716.1_g000003
rosa_roxburghii	Rroxscaffold_7G00210560
rosa_rugosa	Rorug05G0554600
rosa_samantha	Rh6AG071600 Rh6BG063800 Rh6CG063200 Rh6DG060300
rosa_wichuraiana	Rw6G006270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2172
Acc16I	TGCGCA	1 cut(s)	2621
Acc36I	ACCTGC	2 cut(s)	535, 2172
AccI	GTMKAC	2 cut(s)	794, 2685
AciI	CCGC	3 cut(s)	120, 735, 1884
AclWI	GGATC	7 cut(s)	168, 702, 971, 984, 2045, 2306, 2479
AcsI	RAATTY	5 cut(s)	10, 875, 940, 1888, 2084
AcuI	CTGAAG	8 cut(s)	825, 834, 891, 1142, 1404, 1610, 1854, 2819
AcyI	GRCGYC	2 cut(s)	123, 388
AfaI	GTAC	4 cut(s)	889, 1495, 1786, 2626
AfiI	CCNNNNNNNGG	2 cut(s)	191, 1196
AflII	CTTAAG	1 cut(s)	1505
AflIII	ACRYGT	2 cut(s)	1201, 1241
AjiI	CACGTC	1 cut(s)	1242
AjnI	CCWGG	4 cut(s)	1031, 1189, 1950, 2431
AjuI	GAANNNNNNNTTGG	2 cut(s)	32, 64
Alw21I	GWGCWC	2 cut(s)	1010, 1108
Alw26I	GTCTC	2 cut(s)	130, 1557
AlwI	GGATC	7 cut(s)	168, 702, 971, 984, 2045, 2306, 2479
AlwNI	CAGNNNCTG	3 cut(s)	334, 503, 921
AoxI	GGCC	1 cut(s)	1873
ApeKI	GCWGC	6 cut(s)	503, 1015, 1642, 2252, 2365, 2405
ApoI	RAATTY	5 cut(s)	10, 875, 940, 1888, 2084
Asp700I	GAANNNNTTC	4 cut(s)	961, 1623, 2004, 2464
AspA2I	CCTAGG	1 cut(s)	115
AspLEI	GCGC	2 cut(s)	1834, 2622
AspS9I	GGNCC	3 cut(s)	264, 2238, 2413
AsuHPI	GGTGA	5 cut(s)	361, 794, 812, 1366, 1946
AvaII	GGWCC	3 cut(s)	264, 2238, 2413
AvrII	CCTAGG	1 cut(s)	115
AxyI	CCTNAGG	1 cut(s)	1266
BamHI	GGATCC	1 cut(s)	976
BanII	GRGCYC	2 cut(s)	465, 1010
BbsI	GAAGAC	3 cut(s)	92, 1130, 1997
Bbv12I	GWGCWC	2 cut(s)	1010, 1108
BbvI	GCAGC	6 cut(s)	490, 1002, 1654, 2264, 2377, 2392
BccI	CCATC	5 cut(s)	299, 764, 1184, 1814, 2111
BciT130I	CCWGG	4 cut(s)	1033, 1191, 1952, 2433
BciVI	GTATCC	1 cut(s)	649
BclI	TGATCA	1 cut(s)	631
BcoDI	GTCTC	2 cut(s)	130, 1557
BfaI	CTAG	8 cut(s)	116, 324, 885, 1062, 1208, 1346, 1664, 2651
BfmI	CTRYAG	4 cut(s)	224, 409, 1812, 2165
BfrI	CTTAAG	1 cut(s)	1505
BfuAI	ACCTGC	2 cut(s)	535, 2172
BfuI	GTATCC	1 cut(s)	649
BglII	AGATCT	1 cut(s)	2748
BisI	GCNGC	7 cut(s)	121, 504, 1016, 1643, 2253, 2366, 2406
BlnI	CCTAGG	1 cut(s)	115
BlsI	GCNGC	7 cut(s)	122, 505, 1017, 1644, 2254, 2367, 2407
BmcAI	AGTACT	1 cut(s)	2626
Bme1390I	CCNGG	4 cut(s)	1033, 1191, 1952, 2433
Bme18I	GGWCC	3 cut(s)	264, 2238, 2413
BmgBI	CACGTC	1 cut(s)	1242
BmgT120I	GGNCC	3 cut(s)	264, 2238, 2413
BmrFI	CCNGG	4 cut(s)	1033, 1191, 1952, 2433
BmrI	ACTGGG	2 cut(s)	461, 1311
BmsI	GCATC	7 cut(s)	601, 835, 1466, 1519, 1711, 2303, 2849
BmuI	ACTGGG	2 cut(s)	461, 1311
BpiI	GAAGAC	3 cut(s)	92, 1130, 1997
BpmI	CTGGAG	4 cut(s)	1054, 1893, 1995, 2454
BpuEI	CTTGAG	7 cut(s)	538, 560, 994, 1597, 1730, 2322, 2381
BsaBI	GATNNNNATC	1 cut(s)	1425
BsaHI	GRCGYC	2 cut(s)	123, 388
BsaJI	CCNNGG	4 cut(s)	115, 563, 2316, 2409
BsaXI	ACNNNNNCTCC	4 cut(s)	1298, 1328, 2125, 2155
Bsc4I	CCNNNNNNNGG	2 cut(s)	191, 1196
Bse1I	ACTGG	6 cut(s)	467, 488, 1306, 1598, 1910, 2241
Bse21I	CCTNAGG	1 cut(s)	1266
Bse3DI	GCAATG	1 cut(s)	2223
Bse8I	GATNNNNATC	1 cut(s)	1425
BseBI	CCWGG	4 cut(s)	1033, 1191, 1952, 2433
BseDI	CCNNGG	4 cut(s)	115, 563, 2316, 2409
BseGI	GGATG	6 cut(s)	877, 1159, 1481, 1562, 2176, 2644
BseJI	GATNNNNATC	1 cut(s)	1425
BseLI	CCNNNNNNNGG	2 cut(s)	191, 1196
BseMI	GCAATG	1 cut(s)	2223
BseMII	CTCAG	8 cut(s)	326, 434, 948, 2336, 2562, 2688, 2719, 2748
BseNI	ACTGG	6 cut(s)	467, 488, 1306, 1598, 1910, 2241
BseRI	GAGGAG	6 cut(s)	139, 142, 151, 286, 800, 1226
BseXI	GCAGC	6 cut(s)	490, 1002, 1654, 2264, 2377, 2392
BsgI	GTGCAG	3 cut(s)	1001, 1505, 2358
BshFI	GGCC	1 cut(s)	1875
BsiHKAI	GWGCWC	2 cut(s)	1010, 1108
BslFI	GGGAC	1 cut(s)	2468
BslI	CCNNNNNNNGG	2 cut(s)	191, 1196
BsmAI	GTCTC	2 cut(s)	130, 1557
BsmBI	CGTCTC	1 cut(s)	130
BsmFI	GGGAC	1 cut(s)	2468
BsnI	GGCC	1 cut(s)	1875
Bsp1286I	GDGCHC	3 cut(s)	465, 1010, 1108
BspACI	CCGC	3 cut(s)	120, 735, 1884
BspANI	GGCC	1 cut(s)	1875
BspCNI	CTCAG	8 cut(s)	327, 435, 947, 2337, 2563, 2689, 2718, 2747
BspHI	TCATGA	1 cut(s)	2104
BspMAI	CTGCAG	3 cut(s)	228, 413, 2169
BspMI	ACCTGC	2 cut(s)	535, 2172
BspPI	GGATC	7 cut(s)	168, 702, 971, 984, 2045, 2306, 2479
BspTI	CTTAAG	1 cut(s)	1505
BsrDI	GCAATG	1 cut(s)	2223
BsrI	ACTGG	6 cut(s)	467, 488, 1306, 1598, 1910, 2241
BssECI	CCNNGG	4 cut(s)	115, 563, 2316, 2409
BssNAI	GTATAC	2 cut(s)	795, 2686
BssNI	GRCGYC	2 cut(s)	123, 388
BssT1I	CCWWGG	2 cut(s)	115, 563
Bst1107I	GTATAC	2 cut(s)	795, 2686
Bst2UI	CCWGG	4 cut(s)	1033, 1191, 1952, 2433
Bst6I	CTCTTC	5 cut(s)	1281, 1820, 2153, 2523, 2739
BstACI	GRCGYC	2 cut(s)	123, 388
BstAFI	CTTAAG	1 cut(s)	1505
BstAPI	GCANNNNNTGC	1 cut(s)	921
BstC8I	GCNNGC	7 cut(s)	926, 1052, 1469, 1836, 1877, 2292, 2542
BstF5I	GGATG	6 cut(s)	877, 1159, 1481, 1562, 2176, 2644
BstHHI	GCGC	2 cut(s)	1834, 2622
BstMAI	GTCTC	2 cut(s)	130, 1557
BstMWI	GCNNNNNNNGC	6 cut(s)	581, 921, 930, 1881, 2402, 2707
BstNI	CCWGG	4 cut(s)	1033, 1191, 1952, 2433
BstNSI	RCATGY	1 cut(s)	1838
BstSCI	CCNGG	4 cut(s)	1031, 1189, 1950, 2431
BstSFI	CTRYAG	4 cut(s)	224, 409, 1812, 2165
BstV1I	GCAGC	6 cut(s)	490, 1002, 1654, 2264, 2377, 2392
BstV2I	GAAGAC	3 cut(s)	92, 1130, 1997
BstX2I	RGATCY	6 cut(s)	173, 707, 976, 2037, 2311, 2748
BstXI	CCANNNNNNTGG	2 cut(s)	988, 2248
BstYI	RGATCY	6 cut(s)	173, 707, 976, 2037, 2311, 2748
BstZ17I	GTATAC	2 cut(s)	795, 2686
Bsu36I	CCTNAGG	1 cut(s)	1266
BsuI	GTATCC	1 cut(s)	649
BsuRI	GGCC	1 cut(s)	1875
BtrI	CACGTC	1 cut(s)	1242
BtsCI	GGATG	6 cut(s)	877, 1159, 1481, 1562, 2176, 2644
BtsIMutI	CAGTG	9 cut(s)	321, 460, 711, 1488, 1917, 2095, 2248, 2525, 2847
BveI	ACCTGC	2 cut(s)	535, 2172
Cac8I	GCNNGC	7 cut(s)	926, 1052, 1469, 1836, 1877, 2292, 2542
CaiI	CAGNNNCTG	3 cut(s)	334, 503, 921
CciI	TCATGA	1 cut(s)	2104
CfoI	GCGC	2 cut(s)	1834, 2622
Cfr13I	GGNCC	3 cut(s)	264, 2238, 2413
CseI	GACGC	3 cut(s)	112, 377, 1192
CsiI	ACCWGGT	1 cut(s)	1950
Csp6I	GTAC	4 cut(s)	888, 1494, 1785, 2625
CspCI	CAANNNNNGTGG	2 cut(s)	1893, 1928
CviAII	CATG	7 cut(s)	346, 1147, 1835, 2105, 2477, 2551, 2632
CviQI	GTAC	4 cut(s)	888, 1494, 1785, 2625
DraI	TTTAAA	1 cut(s)	880
Eam1104I	CTCTTC	5 cut(s)	1281, 1820, 2153, 2523, 2739
EarI	CTCTTC	5 cut(s)	1281, 1820, 2153, 2523, 2739
Ecl136II	GAGCTC	1 cut(s)	1008
Eco130I	CCWWGG	2 cut(s)	115, 563
Eco24I	GRGCYC	2 cut(s)	465, 1010
Eco47I	GGWCC	3 cut(s)	264, 2238, 2413
Eco53kI	GAGCTC	1 cut(s)	1008
Eco57I	CTGAAG	8 cut(s)	825, 834, 891, 1142, 1404, 1610, 1854, 2819
Eco81I	CCTNAGG	1 cut(s)	1266
EcoICRI	GAGCTC	1 cut(s)	1008
EcoRI	GAATTC	2 cut(s)	10, 2084
EcoRII	CCWGG	4 cut(s)	1031, 1189, 1950, 2431
EcoT14I	CCWWGG	2 cut(s)	115, 563
EcoT22I	ATGCAT	1 cut(s)	2552
EcoT38I	GRGCYC	2 cut(s)	465, 1010
ErhI	CCWWGG	2 cut(s)	115, 563
Esp3I	CGTCTC	1 cut(s)	130
FaeI	CATG	7 cut(s)	349, 1150, 1838, 2108, 2480, 2554, 2635
FalI	AAGNNNNNCTT	6 cut(s)	32, 64, 1631, 1663, 2786, 2818
FaqI	GGGAC	1 cut(s)	2468
FatI	CATG	7 cut(s)	345, 1146, 1834, 2104, 2476, 2550, 2631
FbaI	TGATCA	1 cut(s)	631
FblI	GTMKAC	2 cut(s)	794, 2685
Fnu4HI	GCNGC	7 cut(s)	121, 504, 1016, 1643, 2253, 2366, 2406
FokI	GGATG	6 cut(s)	884, 1166, 1488, 1569, 2183, 2631
FriOI	GRGCYC	2 cut(s)	465, 1010
Fsp4HI	GCNGC	7 cut(s)	121, 504, 1016, 1643, 2253, 2366, 2406
FspBI	CTAG	8 cut(s)	116, 324, 885, 1062, 1208, 1346, 1664, 2651
FspI	TGCGCA	1 cut(s)	2621
GlaI	GCGC	2 cut(s)	1833, 2621
GluI	GCNGC	7 cut(s)	121, 504, 1016, 1643, 2253, 2366, 2406
GsuI	CTGGAG	4 cut(s)	1054, 1893, 1995, 2454
HaeIII	GGCC	1 cut(s)	1875
HgaI	GACGC	3 cut(s)	112, 377, 1192
HhaI	GCGC	2 cut(s)	1834, 2622
Hin1I	GRCGYC	2 cut(s)	123, 388
Hin1II	CATG	7 cut(s)	349, 1150, 1838, 2108, 2480, 2554, 2635
Hin6I	GCGC	2 cut(s)	1832, 2620
HinP1I	GCGC	2 cut(s)	1832, 2620
HincII	GTYRAC	2 cut(s)	2353, 2642
HindII	GTYRAC	2 cut(s)	2353, 2642
HindIII	AAGCTT	4 cut(s)	46, 246, 1706, 2495
HphI	GGTGA	5 cut(s)	361, 794, 812, 1366, 1946
Hpy166II	GTNNAC	8 cut(s)	795, 1247, 1915, 1948, 2353, 2642, 2686, 2781
Hpy8I	GTNNAC	8 cut(s)	795, 1247, 1915, 1948, 2353, 2642, 2686, 2781
Hpy99I	CGWCG	1 cut(s)	393
HpyAV	CCTTC	6 cut(s)	175, 330, 586, 2232, 2769, 2843
HpyCH4IV	ACGT	2 cut(s)	1203, 1241
HpyF10VI	GCNNNNNNNGC	6 cut(s)	581, 921, 930, 1881, 2402, 2707
HpySE526I	ACGT	2 cut(s)	1203, 1241
Hsp92I	GRCGYC	2 cut(s)	123, 388
Hsp92II	CATG	7 cut(s)	349, 1150, 1838, 2108, 2480, 2554, 2635
HspAI	GCGC	2 cut(s)	1832, 2620
Ksp22I	TGATCA	1 cut(s)	631
LmnI	GCTCC	7 cut(s)	134, 164, 468, 589, 1111, 1537, 1770
Lsp1109I	GCAGC	6 cut(s)	490, 1002, 1654, 2264, 2377, 2392
LweI	GCATC	7 cut(s)	601, 835, 1466, 1519, 1711, 2303, 2849
MabI	ACCWGGT	1 cut(s)	1950
MaeI	CTAG	8 cut(s)	116, 324, 885, 1062, 1208, 1346, 1664, 2651
MaeII	ACGT	2 cut(s)	1203, 1241
MaeIII	GTNAC	5 cut(s)	394, 554, 917, 1588, 2716
MflI	RGATCY	6 cut(s)	173, 707, 976, 2037, 2311, 2748
MhlI	GDGCHC	3 cut(s)	465, 1010, 1108
MlyI	GAGTC	4 cut(s)	1120, 1265, 2149, 2726
MmeI	TCCRAC	4 cut(s)	81, 1059, 1928, 2651
Mph1103I	ATGCAT	1 cut(s)	2552
MroXI	GAANNNNTTC	4 cut(s)	961, 1623, 2004, 2464
MslI	CAYNNNNRTG	1 cut(s)	1972
MspCI	CTTAAG	1 cut(s)	1505
MspR9I	CCNGG	4 cut(s)	1033, 1191, 1952, 2433
MvaI	CCWGG	4 cut(s)	1033, 1191, 1952, 2433
MwoI	GCNNNNNNNGC	6 cut(s)	581, 921, 930, 1881, 2402, 2707
NlaIII	CATG	7 cut(s)	349, 1150, 1838, 2108, 2480, 2554, 2635
NmuCI	GTSAC	1 cut(s)	1588
NsbI	TGCGCA	1 cut(s)	2621
NsiI	ATGCAT	1 cut(s)	2552
NspI	RCATGY	1 cut(s)	1838
PaeI	GCATGC	1 cut(s)	1838
PagI	TCATGA	1 cut(s)	2104
PaqCI	CACCTGC	1 cut(s)	2172
PcsI	WCGNNNNNNNCGW	1 cut(s)	20
PdmI	GAANNNNTTC	4 cut(s)	961, 1623, 2004, 2464
PfoI	TCCNGGA	1 cut(s)	1189
PkrI	GCNGC	7 cut(s)	122, 505, 1017, 1644, 2254, 2367, 2407
PleI	GAGTC	4 cut(s)	1120, 1265, 2148, 2726
PpsI	GAGTC	4 cut(s)	1120, 1265, 2148, 2726
Psp124BI	GAGCTC	1 cut(s)	1010
Psp6I	CCWGG	4 cut(s)	1031, 1189, 1950, 2431
PspGI	CCWGG	4 cut(s)	1031, 1189, 1950, 2431
PspPI	GGNCC	3 cut(s)	264, 2238, 2413
PstI	CTGCAG	3 cut(s)	228, 413, 2169
PstNI	CAGNNNCTG	3 cut(s)	334, 503, 921
PsuI	RGATCY	6 cut(s)	173, 707, 976, 2037, 2311, 2748
RsaI	GTAC	4 cut(s)	889, 1495, 1786, 2626
RsaNI	GTAC	4 cut(s)	888, 1494, 1785, 2625
RseI	CAYNNNNRTG	1 cut(s)	1972
SacI	GAGCTC	1 cut(s)	1010
SatI	GCNGC	7 cut(s)	121, 504, 1016, 1643, 2253, 2366, 2406
Sau96I	GGNCC	3 cut(s)	264, 2238, 2413
SbfI	CCTGCAGG	1 cut(s)	2169
ScaI	AGTACT	1 cut(s)	2626
SchI	GAGTC	4 cut(s)	1120, 1265, 2149, 2726
ScrFI	CCNGG	4 cut(s)	1033, 1191, 1952, 2433
SdaI	CCTGCAGG	1 cut(s)	2169
SduI	GDGCHC	3 cut(s)	465, 1010, 1108
SexAI	ACCWGGT	1 cut(s)	1950
SfaNI	GCATC	7 cut(s)	601, 835, 1466, 1519, 1711, 2303, 2849
SfcI	CTRYAG	4 cut(s)	224, 409, 1812, 2165
SinI	GGWCC	3 cut(s)	264, 2238, 2413
SmiI	ATTTAAAT	1 cut(s)	880
SmiMI	CAYNNNNRTG	1 cut(s)	1972
SmlI	CTYRAG	8 cut(s)	517, 539, 1009, 1505, 1576, 1709, 2337, 2360
SmoI	CTYRAG	8 cut(s)	517, 539, 1009, 1505, 1576, 1709, 2337, 2360
SphI	GCATGC	1 cut(s)	1838
Sse8387I	CCTGCAGG	1 cut(s)	2169
SsiI	CCGC	3 cut(s)	120, 735, 1884
SspI	AATATT	2 cut(s)	809, 2563
SspMI	CTAG	8 cut(s)	116, 324, 885, 1062, 1208, 1346, 1664, 2651
SstI	GAGCTC	1 cut(s)	1010
StyD4I	CCNGG	4 cut(s)	1031, 1189, 1950, 2431
StyI	CCWWGG	2 cut(s)	115, 563
SwaI	ATTTAAAT	1 cut(s)	880
TaiI	ACGT	2 cut(s)	1206, 1244
TaqI	TCGA	6 cut(s)	251, 293, 955, 1681, 1864, 2730
TatI	WGTACW	2 cut(s)	1784, 2624
TauI	GCSGC	1 cut(s)	123
TscAI	CASTG	9 cut(s)	321, 460, 718, 1488, 1917, 2095, 2248, 2525, 2854
TseFI	GTSAC	1 cut(s)	1588
TseI	GCWGC	6 cut(s)	503, 1015, 1642, 2252, 2365, 2405
Tsp45I	GTSAC	1 cut(s)	1588
TspDTI	ATGAA	5 cut(s)	774, 888, 1182, 2121, 2187
TspGWI	ACGGA	2 cut(s)	2039, 2472
TspRI	CASTG	9 cut(s)	321, 460, 718, 1488, 1917, 2095, 2248, 2525, 2854
Vha464I	CTTAAG	1 cut(s)	1505
VpaK11BI	GGWCC	3 cut(s)	264, 2238, 2413
XapI	RAATTY	5 cut(s)	10, 875, 940, 1888, 2084
XbaI	TCTAGA	3 cut(s)	1207, 1663, 2650
XceI	RCATGY	1 cut(s)	1838
XmaJI	CCTAGG	1 cut(s)	115
XmiI	GTMKAC	2 cut(s)	794, 2685
XmnI	GAANNNNTTC	4 cut(s)	961, 1623, 2004, 2464
XspI	CTAG	8 cut(s)	116, 324, 885, 1062, 1208, 1346, 1664, 2651
ZrmI	AGTACT	1 cut(s)	2626
Zsp2I	ATGCAT	1 cut(s)	2552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.